MELO3C026107 (gene) Melon (DHL92) v3.5.1

NameMELO3C026107
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S10
Locationchr12 : 14228721 .. 14229002 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCAAAAACAGCTTGAAGAAAGAATGAAATCAACTGAAAGGGAGGTTATAGACCTCAAGGAAATCATACTCGGACTAAAGGAGAGTGTGGACCGTTTAGCCAAAGAAATGAAAAAGAGTGTGGCGAGTAGGAAAAAAGAAGAGTTAGGAACGTCTGACGTTTCGATACACAAGACGAAAGAGAAAAGGGAGGAGTTAGAAATGCAGTCGACGGCCAAACCTGGACAGTGGATAAGAGCACACATAAGAAGTTGGAAATGCCCATCTTCAATGAAGTGA

mRNA sequence

ATGGCTCAAAAACAGCTTGAAGAAAGAATGAAATCAACTGAAAGGGAGGTTATAGACCTCAAGGAAATCATACTCGGACTAAAGGAGAGTGTGGACCGTTTAGCCAAAGAAATGAAAAAGAGTGTGGCGAGTAGGAAAAAAGAAGAGTTAGGAACGTCTGACGTTTCGATACACAAGACGAAAGAGAAAAGGGAGGAGTTAGAAATGCAGTCGACGGCCAAACCTGGACAGTGGATAAGAGCACACATAAGAAGTTGGAAATGCCCATCTTCAATGAAGTGA

Coding sequence (CDS)

ATGGCTCAAAAACAGCTTGAAGAAAGAATGAAATCAACTGAAAGGGAGGTTATAGACCTCAAGGAAATCATACTCGGACTAAAGGAGAGTGTGGACCGTTTAGCCAAAGAAATGAAAAAGAGTGTGGCGAGTAGGAAAAAAGAAGAGTTAGGAACGTCTGACGTTTCGATACACAAGACGAAAGAGAAAAGGGAGGAGTTAGAAATGCAGTCGACGGCCAAACCTGGACAGTGGATAAGAGCACACATAAGAAGTTGGAAATGCCCATCTTCAATGAAGTGA

Protein sequence

MAQKQLEERMKSTEREVIDLKEIILGLKESVDRLAKEMKKSVASRKKEELGTSDVSIHKTKEKREELEMQSTAKPGQWIRAHIRSWKCPSSMK*
BLAST of MELO3C026107 vs. NCBI nr
Match: gi|659112485|ref|XP_008456244.1| (PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-09
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1

Query: 1  MAQKQLEERMKSTEREVIDLKEIILGLKESVDRLAKEMKKSVASRKKEELGTSDVSIHKT 60
          MAQ+Q+EER++ TE+EV+ LKE++  +K++++RLA+EM++S   +KKEE GT D  + K 
Sbjct: 1  MAQRQVEERLEGTEKEVLGLKEMMREMKKTMERLAEEMRESQYYKKKEESGTFDGFVMKL 60

Query: 61 KEKREELEMQSTAKPGQWIRAHIRSWKCP 90
          K K EEL++ +        R+  +  + P
Sbjct: 61 KGKMEELDVTAEVNTNTVDRSKYKKLEMP 89

BLAST of MELO3C026107 vs. NCBI nr
Match: gi|659093726|ref|XP_008447685.1| (PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 8.9e-09
Identity = 34/89 (38.20%), Postives = 60/89 (67.42%), Query Frame = 1

Query: 1  MAQKQLEERMKSTEREVIDLKEIILGLKESVDRLAKEMKKSVASRKKEELGTSDVSIHKT 60
          MAQ+Q+EER++  ++EV+ LK+++L +K+++DRLA E++++ + +KKEE  TSD SI K 
Sbjct: 1  MAQRQMEERLEGMKKEVLSLKKMMLEMKKNMDRLADELRENQSYKKKEESDTSDGSIMKM 60

Query: 61 KEKREELEMQSTAKPGQWIRAHIRSWKCP 90
          K K EE ++ +        R+  +  + P
Sbjct: 61 KGKMEETDITTEVNTNLVDRSKYKKLEMP 89

BLAST of MELO3C026107 vs. NCBI nr
Match: gi|659093928|ref|XP_008447791.1| (PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-07
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1

Query: 6  LEERMKSTEREVIDLKEIILGLKESVDRLAKEMKKSVASRKKEELGTSDVSIHKTKEKRE 65
          +EER++ TE+EV+ LKE++L +K+S+DRLA E++   + +KKEE GTSD SI K K K E
Sbjct: 1  MEERLEGTEKEVLSLKEMMLEMKKSMDRLADELRDQ-SYKKKEESGTSDGSIMKMKGKME 60

Query: 66 ELEM 70
          E ++
Sbjct: 61 ETDL 63

BLAST of MELO3C026107 vs. NCBI nr
Match: gi|778697580|ref|XP_011654353.1| (PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 6.4e-07
Identity = 27/71 (38.03%), Postives = 55/71 (77.46%), Query Frame = 1

Query: 1  MAQKQLEERMKSTEREVIDLKEIILGLKESVDRLAKEMKKSVASRKKEELGTSDVSIHKT 60
          MAQ+Q+E+ +  TE+E++ LKE++L +K++++R+A+ ++++ + +++EE GTSD S+ K 
Sbjct: 1  MAQRQIEDIVDGTEKEIMVLKEMLLEMKKAMERMAEVLRENHSYKRREESGTSDGSVMKL 60

Query: 61 KEKREELEMQS 72
          K K EE ++ +
Sbjct: 61 KGKAEETDVHN 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659112485|ref|XP_008456244.1|1.4e-0940.45PREDICTED: uncharacterized protein LOC103496243 [Cucumis melo][more]
gi|659093726|ref|XP_008447685.1|8.9e-0938.20PREDICTED: uncharacterized protein LOC103490096 [Cucumis melo][more]
gi|659093928|ref|XP_008447791.1|1.3e-0751.56PREDICTED: uncharacterized protein LOC103490181 [Cucumis melo][more]
gi|778697580|ref|XP_011654353.1|6.4e-0738.03PREDICTED: uncharacterized protein LOC105435354 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026107T1MELO3C026107T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 3..23
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None