MELO3C026104 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026104
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, putative, Ty3-gypsy subclass
Location	chr12 : 14295394 .. 14295639 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATCTTAAAAGAAGGGAGCTCAAATTTAAAGTGGGAGATGAGGTATACTTGAAGTTGAGACCCTATAGGAAACATTCATTGTCTAGGAAGGAGTGTGAGAAACTTGTACCGAAGTACTATGGCCCTTATAAAATCAAAGAAGAGATTGGTGAGGTGACTTATCCTTTGGAATTACCACTTGAAGCTGCCAGATTCTTCTCTCTTACTGTAACTACGATTCTCTCTCATTTCTTCGACTAA

mRNA sequence

ATGGCTGATCTTAAAAGAAGGGAGCTCAAATTTAAAGTGGGAGATGAGGTATACTTGAAGTTGAGACCCTATAGGAAACATTCATTGTCTAGGAAGGAGTGTGAGAAACTTGTACCGAAGTACTATGGCCCTTATAAAATCAAAGAAGAGATTGGTGAGGTGACTTATCCTTTGGAATTACCACTTGAAGCTGCCAGATTCTTCTCTCTTACTGTAACTACGATTCTCTCTCATTTCTTCGACTAA

Coding sequence (CDS)

ATGGCTGATCTTAAAAGAAGGGAGCTCAAATTTAAAGTGGGAGATGAGGTATACTTGAAGTTGAGACCCTATAGGAAACATTCATTGTCTAGGAAGGAGTGTGAGAAACTTGTACCGAAGTACTATGGCCCTTATAAAATCAAAGAAGAGATTGGTGAGGTGACTTATCCTTTGGAATTACCACTTGAAGCTGCCAGATTCTTCTCTCTTACTGTAACTACGATTCTCTCTCATTTCTTCGACTAA

Protein sequence

MADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELPLEAARFFSLTVTTILSHFFD*

Homology

[Close]

BLAST of MELO3C026104 vs. TrEMBL
Match: D1GEG7_BRARP (Disease resistance protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.6e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
            AD  RREL F VGD VYLKL+P+R+H++ R+ C+KL  KY+GPY+I E IG+V Y L+LP
Sbjct: 2543 ADKHRRELSFAVGDWVYLKLKPFRQHTVVRRYCQKLAAKYFGPYEISERIGKVAYRLKLP 2602

Query: 62   LEA 65
             EA
Sbjct: 2603 DEA 2605

[Close]

BLAST of MELO3C026104 vs. TrEMBL
Match: A0A087HA04_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G181900 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-13
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
            AD  RRE++F+VGD VYLKL+PYR+ SL+R+  EKL  +YYGPY++   +GEV Y L+LP
Sbjct: 1253 ADKHRREVEFQVGDTVYLKLKPYRQKSLARRSNEKLSARYYGPYEVLARVGEVAYKLKLP 1312

Query: 62   LEA 65
             EA
Sbjct: 1313 AEA 1315

[Close]

BLAST of MELO3C026104 vs. TrEMBL
Match: A0A087GW89_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-12
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
            AD  RREL F+VGD VYLKL+PYR+ SL+R+  EKL  +YYGPY++   +GEV Y L+LP
Sbjct: 1363 ADKHRRELDFQVGDMVYLKLKPYRQKSLARRSNEKLSARYYGPYEVLARVGEVAYKLKLP 1422

Query: 62   LEA 65
              A
Sbjct: 1423 AAA 1425

[Close]

BLAST of MELO3C026104 vs. TrEMBL
Match: A0A0L9VIM9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g065900 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1


Query: 2   ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
           A+  RR+++F++GD VYLKL+P+R  SLSR+  EKL P++YGPYK+ E IG V Y LELP
Sbjct: 196 ANKHRRDVEFQIGDWVYLKLQPFRLKSLSRRPNEKLSPRFYGPYKVLERIGVVAYKLELP 255

[Close]

BLAST of MELO3C026104 vs. TrEMBL
Match: A0A087HNU2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.5e-11
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1


Query: 2   ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
           AD  RRE+ F VGD V+LKLRPYR+ SLSR+  EKL  +YYGPY+I+  +G V Y L+LP
Sbjct: 472 ADNHRREVNFAVGDLVFLKLRPYRQKSLSRRPNEKLAARYYGPYEIEARVGPVAYKLKLP 531

[Close]

BLAST of MELO3C026104 vs. NCBI nr
Match: gi|659094491|ref|XP_008448087.1| (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 1.9e-18
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
            ADLKRRELK KVG+EVYLKL+PYR+ SL+RK+ EKL P+YYGPYKI EEIG V Y L+LP
Sbjct: 963  ADLKRRELKLKVGEEVYLKLKPYRQRSLARKKSEKLAPRYYGPYKIIEEIGAVAYRLDLP 1022

Query: 62   LEAA 66
             EAA
Sbjct: 1023 PEAA 1026

[Close]

BLAST of MELO3C026104 vs. NCBI nr
Match: gi|227438239|gb|ACP30609.1| (disease resistance protein [Brassica rapa subsp. pekinensis])

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
            AD  RREL F VGD VYLKL+P+R+H++ R+ C+KL  KY+GPY+I E IG+V Y L+LP
Sbjct: 2543 ADKHRRELSFAVGDWVYLKLKPFRQHTVVRRYCQKLAAKYFGPYEISERIGKVAYRLKLP 2602

Query: 62   LEA 65
             EA
Sbjct: 2603 DEA 2605

[Close]

BLAST of MELO3C026104 vs. NCBI nr
Match: gi|674246191|gb|KFK38956.1| (hypothetical protein AALP_AA3G181900 [Arabis alpina])

HSP 1 Score: 81.6 bits (200), Expect = 6.8e-13
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
            AD  RRE++F+VGD VYLKL+PYR+ SL+R+  EKL  +YYGPY++   +GEV Y L+LP
Sbjct: 1253 ADKHRREVEFQVGDTVYLKLKPYRQKSLARRSNEKLSARYYGPYEVLARVGEVAYKLKLP 1312

Query: 62   LEA 65
             EA
Sbjct: 1313 AEA 1315

[Close]

BLAST of MELO3C026104 vs. NCBI nr
Match: gi|923721473|ref|XP_013665163.1| (PREDICTED: uncharacterized protein LOC106369573 [Brassica napus])

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-12
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 2    ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
            AD  RR+L F+VGD V+LKLRPYR+ S++++ C+KL  K+YGP+K+ E IG+V Y L+LP
Sbjct: 1293 ADQHRRDLAFEVGDSVFLKLRPYRQSSVAKQLCQKLAAKFYGPFKVFERIGKVAYRLKLP 1352

Query: 62   LEA 65
             E+
Sbjct: 1353 AES 1355

[Close]

BLAST of MELO3C026104 vs. NCBI nr
Match: gi|778730254|ref|XP_011659739.1| (PREDICTED: uncharacterized protein LOC105436252 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-12
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 2   ADLKRRELKFKVGDEVYLKLRPYRKHSLSRKECEKLVPKYYGPYKIKEEIGEVTYPLELP 61
           AD+KRR ++F+ GD+V+LK+RPYR+ SL +K  EKL PKY+GPYKI + IG VTY LELP
Sbjct: 260 ADMKRRHVEFE-GDKVFLKIRPYRQASLRKKTNEKLSPKYFGPYKIVKRIGPVTYRLELP 319

Query: 62  LEA 65
             A
Sbjct: 320 TAA 321

The following BLAST results are available for this feature:

BLAST of MELO3C026104 vs. TrEMBL


Match Name	E-value	Identity	Description
D1GEG7_BRARP	1.6e-13	60.32	Disease resistance protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A087HA04_ARAAL	4.7e-13	58.73	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G181900 PE=4 SV=1	[more]
A0A087GW89_ARAAL	2.4e-12	58.73	Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G106200 PE=4 SV=1	[more]
A0A0L9VIM9_PHAAN	1.5e-11	58.33	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g065900 PE=4 SV=1	[more]
A0A087HNU2_ARAAL	1.5e-11	60.00	Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G173500 PE=4 SV=1	[more]

BLAST of MELO3C026104 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659094491\|ref\|XP_008448087.1\|	1.9e-18	75.00	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
gi\|227438239\|gb\|ACP30609.1\|	2.3e-13	60.32	disease resistance protein [Brassica rapa subsp. pekinensis]	[more]
gi\|674246191\|gb\|KFK38956.1\|	6.8e-13	58.73	hypothetical protein AALP_AA3G181900 [Arabis alpina]	[more]
gi\|923721473\|ref\|XP_013665163.1\|	2.0e-12	55.56	PREDICTED: uncharacterized protein LOC106369573 [Brassica napus]	[more]
gi\|778730254\|ref\|XP_011659739.1\|	2.6e-12	61.90	PREDICTED: uncharacterized protein LOC105436252 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026104T1	MELO3C026104T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..61 score: 8.0
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..61 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026104	Cucurbita moschata (Rifu)	cmomeB182
MELO3C026104	Wild cucumber (PI 183967)	cpimeB017
MELO3C026104	Wild cucumber (PI 183967)	cpimeB031
MELO3C026104	Cucumber (Chinese Long) v2	cumeB000
MELO3C026104	Watermelon (Charleston Gray)	mewcgB137
MELO3C026104	Cucurbita pepo (Zucchini)	cpemeB004
MELO3C026104	Bottle gourd (USVL1VR-Ls)	lsimeB176
MELO3C026104	Cucumber (Gy14) v2	cgybmeB016
MELO3C026104	Cucumber (Gy14) v2	cgybmeB029
MELO3C026104	Cucumber (Chinese Long) v3	cucmeB016
MELO3C026104	Cucumber (Chinese Long) v3	cucmeB029
MELO3C026104	Watermelon (97103) v2	mewmbB138
MELO3C026104	Wax gourd	mewgoB185
MELO3C026104	Cucumber (Gy14) v1	cgymeB325
MELO3C026104	Cucumber (Gy14) v1	cgymeB528
MELO3C026104	Cucurbita maxima (Rimu)	cmameB195
MELO3C026104	Cucurbita maxima (Rimu)	cmameB367
MELO3C026104	Cucurbita maxima (Rimu)	cmameB369