MELO3C026100 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026100
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Acyl-coA binding protein
Location	chr12 : 14355386 .. 14355613 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGTGGCTTCTTATGTCGGTTTTGATGGATCATCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCACTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGGTTGAGGTTTGA

mRNA sequence

ATGGTTGCGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGTGGCTTCTTATGTCGGTTTTGATGGATCATCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCACTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGGTTGAGGTTTGA

Coding sequence (CDS)

ATGGTTGCGATGGTGAGGGCGAGCTCCGGCTTGCAATATCCCGATCGGTTCTACGCCGTGGCTTCTTATGTCGGTTTTGATGGATCATCGAAATTGTCTTCAAAGGCCCTCAGGTCTAAGTTCTCTGATGAGGCCACTTTGTTACTCTATGGCTTGTATCAGCAGGTACTACCACGTGTTCTTACACCTGTGACTTACCGGTGCTGTTTCAGTTTGGTTGAGGTTTGA

Protein sequence

MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQVLPRVLTPVTYRCCFSLVEV*

Homology

[Close]

BLAST of MELO3C026100 vs. Swiss-Prot
Match: ACBP5_ARATH (Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-12
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M  MVRASSGL YP+RFYA ASYVG DGS   S K L SKFS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGSQS-SVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of MELO3C026100 vs. Swiss-Prot
Match: ACBP4_ARATH (Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-10
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 2  VAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          +AM RA+SG  YP+RFYA ASYVG DGS   S+K + SKF D+  LLLY LYQQ
Sbjct: 1  MAMPRATSGPAYPERFYAAASYVGLDGSDS-SAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of MELO3C026100 vs. TrEMBL
Match: A0A0A0LFW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030060 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M AM RASSGLQYPDRFYA ASY GFDGS K SSKALRSKFSDEA LLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C026100 vs. TrEMBL
Match: M5WQY4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002406mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-13
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 2  VAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          +AM RASSGLQYP+RFYA ASY GFDGS + SSKA+RSKF+ E+ L+LY LYQQ
Sbjct: 1  MAMARASSGLQYPERFYAAASYAGFDGSPRSSSKAVRSKFNSESALILYALYQQ 54

[Close]

BLAST of MELO3C026100 vs. TrEMBL
Match: D7U9T2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g02410 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-12
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 2  VAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          +AM RASSGL YPDRFYA ASY GFDGS   SSK + SKFS++  LLLY LYQQ
Sbjct: 3  MAMARASSGLAYPDRFYAAASYAGFDGSPNSSSKGVSSKFSNDVALLLYALYQQ 56

[Close]

BLAST of MELO3C026100 vs. TrEMBL
Match: K4B0X2_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 2  VAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          +AM R SSGL YP+RFYA ASY GFDGSS  S+K + SKFS++A LLLY LYQQ
Sbjct: 1  MAMARVSSGLAYPERFYAAASYAGFDGSSDSSTKGVSSKFSNDAALLLYALYQQ 54

[Close]

BLAST of MELO3C026100 vs. TrEMBL
Match: M1CAR8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024701 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 6.4e-12
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 2  VAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          +AM R SSGL YP+RFYA ASY GFDGSS  S+K + SKFS++A LLLY LYQQ
Sbjct: 1  MAMARVSSGLAYPERFYAAASYAGFDGSSDSSTKGVSSKFSNDAALLLYALYQQ 54

[Close]

BLAST of MELO3C026100 vs. TAIR10
Match: AT5G27630.1 (AT5G27630.1 acyl-CoA binding protein 5)

HSP 1 Score: 70.5 bits (171), Expect = 5.1e-13
Identity = 37/55 (67.27%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M  MVRASSGL YP+RFYA ASYVG DGS   S K L SKFS++ +LLLY L+QQ
Sbjct: 1  MAHMVRASSGLSYPERFYAAASYVGLDGSQS-SVKQLSSKFSNDTSLLLYTLHQQ 54

[Close]

BLAST of MELO3C026100 vs. TAIR10
Match: AT3G05420.2 (AT3G05420.2 acyl-CoA binding protein 4)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 2  VAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          +AM RA+SG  YP+RFYA ASYVG DGS   S+K + SKF D+  LLLY LYQQ
Sbjct: 1  MAMPRATSGPAYPERFYAAASYVGLDGSDS-SAKNVISKFPDDTALLLYALYQQ 53

[Close]

BLAST of MELO3C026100 vs. NCBI nr
Match: gi|659125410|ref|XP_008462673.1| (PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 49/55 (89.09%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M  MVRASSGLQYPDRFYA ASY GFDGS KLSSKALRSKFSDEA LLLYGLYQQ
Sbjct: 1  MAVMVRASSGLQYPDRFYAAASYAGFDGSPKLSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C026100 vs. NCBI nr
Match: gi|449454077|ref|XP_004144782.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X1 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M AM RASSGLQYPDRFYA ASY GFDGS K SSKALRSKFSDEA LLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C026100 vs. NCBI nr
Match: gi|778666903|ref|XP_011648837.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M AM RASSGLQYPDRFYA ASY GFDGS K SSKALRSKFSDEA LLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C026100 vs. NCBI nr
Match: gi|659070284|ref|XP_008454338.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M AM RASSGLQYPDRFYA ASY GFDGS K SSKALRSKFSDEA LLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

[Close]

BLAST of MELO3C026100 vs. NCBI nr
Match: gi|659070286|ref|XP_008454347.1| (PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MVAMVRASSGLQYPDRFYAVASYVGFDGSSKLSSKALRSKFSDEATLLLYGLYQQ 56
          M AM RASSGLQYPDRFYA ASY GFDGS K SSKALRSKFSDEA LLLYGLYQQ
Sbjct: 1  MAAMARASSGLQYPDRFYAAASYAGFDGSPKSSSKALRSKFSDEAALLLYGLYQQ 55

The following BLAST results are available for this feature:

BLAST of MELO3C026100 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACBP5_ARATH	9.1e-12	67.27	Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE...	[more]
ACBP4_ARATH	2.2e-10	62.96	Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE...	[more]

BLAST of MELO3C026100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFW3_CUCSA	1.3e-17	87.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030060 PE=4 SV=1	[more]
M5WQY4_PRUPE	1.2e-13	72.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002406mg PE=4 SV=1	[more]
D7U9T2_VITVI	2.9e-12	70.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g02410 PE=4 SV=...	[more]
K4B0X2_SOLLC	6.4e-12	68.52	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
M1CAR8_SOLTU	6.4e-12	68.52	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024701 PE=4 SV=1	[more]

BLAST of MELO3C026100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27630.1	5.1e-13	67.27	acyl-CoA binding protein 5	[more]
AT3G05420.2	1.3e-11	62.96	acyl-CoA binding protein 4	[more]

BLAST of MELO3C026100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125410\|ref\|XP_008462673.1\|	3.8e-18	89.09	PREDICTED: acyl-CoA-binding domain-containing protein 5-like [Cucumis melo]	[more]
gi\|449454077\|ref\|XP_004144782.1\|	1.9e-17	87.27	PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X1 [Cucumis sati...	[more]
gi\|778666903\|ref\|XP_011648837.1\|	1.9e-17	87.27	PREDICTED: acyl-CoA-binding domain-containing protein 4 isoform X2 [Cucumis sati...	[more]
gi\|659070284\|ref\|XP_008454338.1\|	1.9e-17	87.27	PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X1 [Cucumis...	[more]
gi\|659070286\|ref\|XP_008454347.1\|	1.9e-17	87.27	PREDICTED: acyl-CoA-binding domain-containing protein 4-like isoform X2 [Cucumis...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000062	fatty-acyl-CoA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026100T1	MELO3C026100T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026100	Watermelon (97103) v2	mewmbB138
MELO3C026100	Wax gourd	mewgoB185
MELO3C026100	Cucumber (Gy14) v1	cgymeB325
MELO3C026100	Cucumber (Gy14) v1	cgymeB528
MELO3C026100	Cucurbita maxima (Rimu)	cmameB195
MELO3C026100	Cucurbita maxima (Rimu)	cmameB367
MELO3C026100	Cucurbita maxima (Rimu)	cmameB369
MELO3C026100	Cucurbita moschata (Rifu)	cmomeB182
MELO3C026100	Wild cucumber (PI 183967)	cpimeB017
MELO3C026100	Wild cucumber (PI 183967)	cpimeB031
MELO3C026100	Cucumber (Chinese Long) v2	cumeB000
MELO3C026100	Watermelon (Charleston Gray)	mewcgB137
MELO3C026100	Cucurbita pepo (Zucchini)	cpemeB004
MELO3C026100	Bottle gourd (USVL1VR-Ls)	lsimeB176
MELO3C026100	Cucumber (Gy14) v2	cgybmeB016
MELO3C026100	Cucumber (Gy14) v2	cgybmeB029
MELO3C026100	Cucumber (Chinese Long) v3	cucmeB016
MELO3C026100	Cucumber (Chinese Long) v3	cucmeB029