MELO3C026091 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C026091
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPDZ domain-containing protein GIPC2
Locationchr12 : 14615286 .. 14615663 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

mRNA sequence

ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

Coding sequence (CDS)

ATGTGGGGTCGAATGTCCCTTTTGGGTACGAGGGATTTGCCGCTGGCAATGAAAATGATAAAGATCCTTACTATGTTTAGTCAAGGACTAAACATGTCGCCTGATGAATTTGTGGCCAGTCGACATGAGCGGTTAGGTGACGGTAGAAATGCTTCAAGTAGGTCAAAGAGGAAGAGGAGAAGTCAGCCTGTAGAGACCACGAACATAATTCAAAATGTCATGGAGTACGCCAATAGCCAGCTCAACTACATTGCAAATTGGCCGATCTTAAGGAATCAAAATGCAAGCGCAACACAGGAGGAGGTCGTTCGACAATTACAGGCCATCCTTAAACTTAGTAGAATTGAGGTGTTGCTGTATGCGTATCTTTATGCATAA

Protein sequence

MWGRMSLLGTRDLPLAMKMIKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAILKLSRIEVLLYAYLYA*
Homology
[Close]
BLAST of MELO3C026091 vs. TrEMBL
Match: E5GBS5_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.4e-25
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
           PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197

[Close]
BLAST of MELO3C026091 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-15
Identity = 42/92 (45.65%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 25  MFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYI 84
           M+S GLNMSPD+ + +R  R+ + RN SS SKRKR     ++ +I++  +EY N QL+ I
Sbjct: 528 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 587

Query: 85  ANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
           A WPIL+ Q+A+ T++E+VR L+AI +L+ ++
Sbjct: 588 AEWPILQRQDATQTRQEIVRHLEAIPELTLMD 619

[Close]
BLAST of MELO3C026091 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 40/88 (45.45%), Postives = 50/88 (56.82%), Query Frame = 1 

Query: 25  MFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYI 84
           M+SQGL+M PDE + +R     +GRN SS SKRK   Q  E  ++I N ME  N QL  I
Sbjct: 1   MYSQGLDMPPDEMLGTRQS--SEGRNCSSGSKRKHGGQHYEAVDVISNEMEVRNDQLKAI 60

Query: 85  ANWPILRNQNASATQEEVVRQLQAILKL 113
           ANW   +         EVV+QLQ I +L
Sbjct: 61  ANWSKEKRATEVELHVEVVKQLQDISEL 86

[Close]
BLAST of MELO3C026091 vs. TrEMBL
Match: A0A0A0LEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1 

Query: 50  NASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANWPILRNQNASATQEEVVRQLQAI 109
           NASSRSKRKR  Q  ET  II+N M+Y N Q   I  WP +++Q+  A   EV++QLQAI
Sbjct: 2   NASSRSKRKRGGQTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAI 61

Query: 110 LKLS 114
            +LS
Sbjct: 62  PELS 65

[Close]
BLAST of MELO3C026091 vs. TrEMBL
Match: A0A0A0L3I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 24  TMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYAN 79
           TM+SQ L++SPDE + +R  R GD RNASS+SKRK R Q +ET +I++NV+EY N
Sbjct: 63  TMYSQRLDISPDEIMETR-SRAGDRRNASSKSKRKWRGQSIETAHILRNVIEYDN 116

[Close]
BLAST of MELO3C026091 vs. NCBI nr
Match: gi|307136067|gb|ADN33917.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 121.7 bits (304), Expect = 9.1e-25
Identity = 62/86 (72.09%), Postives = 71/86 (82.56%), Query Frame = 1 

Query: 28  QGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYIANW 87
           +GLNMSPDEF+ SR  R GDGRNASSRSKRKR  + +E  NIIQN MEYAN QLN I +W
Sbjct: 112 KGLNMSPDEFMDSRLGRSGDGRNASSRSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDW 171

Query: 88  PILRNQNASATQEEVVRQLQAILKLS 114
           PILRNQ+AS TQ+EVVRQLQAI +L+
Sbjct: 172 PILRNQDASVTQQEVVRQLQAIHELN 197

[Close]
BLAST of MELO3C026091 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-16
Identity = 44/94 (46.81%), Postives = 68/94 (72.34%), Query Frame = 1 

Query: 23  LTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLN 82
           L M+S GLNMSPD+ + +R  R+ + RN SS SKRKR     ++ +I++  +EY N QL+
Sbjct: 378 LPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRIAIEYGNEQLH 437

Query: 83  YIANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
            IA WPIL+ Q+A+ T++E+VRQL+AI +L+ ++
Sbjct: 438 RIAEWPILQRQDATQTRQEIVRQLEAIPELTLMD 471

[Close]
BLAST of MELO3C026091 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-16
Identity = 43/92 (46.74%), Postives = 68/92 (73.91%), Query Frame = 1 

Query: 25  MFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYI 84
           M+S+GLNMSPDE + +R  R+ +GR  SS SK+KR    +++ +I++  +EY N QLN I
Sbjct: 122 MYSRGLNMSPDELMGTRTARVSEGRYVSSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRI 181

Query: 85  ANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
           A W +L+ Q+A+ T++EVVRQL+AI +L+ ++
Sbjct: 182 AEWHVLQRQDATQTRQEVVRQLEAIPELTLMD 213

[Close]
BLAST of MELO3C026091 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 42/92 (45.65%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 25  MFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANSQLNYI 84
           M+S GLNMSPD+ + +R  R+ + RN SS SKRKR     ++ +I++  +EY N QL+ I
Sbjct: 528 MYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 587

Query: 85  ANWPILRNQNASATQEEVVRQLQAILKLSRIE 117
           A WPIL+ Q+A+ T++E+VR L+AI +L+ ++
Sbjct: 588 AEWPILQRQDATQTRQEIVRHLEAIPELTLMD 619

[Close]
BLAST of MELO3C026091 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 1 

Query: 20  IKILTMFSQGLNMSPDEFVASRHERLGDGRNASSRSKRKRRSQPVETTNIIQNVMEYANS 79
           ++I TM+ QGLNMSP++ + +R  R  + R  SSRSKRKRR Q VET  +  + MEYAN 
Sbjct: 201 MEIPTMYCQGLNMSPEDIMDTRPSRSSECRTGSSRSKRKRRGQDVETMEVTCSAMEYAND 260

Query: 80  QLNYIANWPILRNQNASATQEEVVR 105
           QL  IA    L  Q+ SAT+ +VVR
Sbjct: 261 QLKAIAECQNLARQDESATRSKVVR 285

The following BLAST results are available for this feature:
BLAST of MELO3C026091 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBS5_CUCME6.4e-2572.09Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME1.6e-1545.65Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KFW0_CUCSA1.3e-0945.45Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1[more]
A0A0A0LEB9_CUCSA2.4e-0853.13Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1[more]
A0A0A0L3I2_CUCSA1.6e-0758.18Uncharacterized protein OS=Cucumis sativus GN=Csa_3G000030 PE=4 SV=1[more]
BLAST of MELO3C026091 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136067|gb|ADN33917.1|9.1e-2572.09hypothetical protein [Cucumis melo subsp. melo][more]
gi|659133698|ref|XP_008466863.1|5.9e-1646.81PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo][more]
gi|659123900|ref|XP_008461893.1|5.9e-1646.74PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo][more]
gi|307136287|gb|ADN34114.1|2.3e-1545.65retrotransposon protein [Cucumis melo subsp. melo][more]
gi|778708415|ref|XP_004148199.2|2.3e-1250.59PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C026091T1MELO3C026091T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C026091Cucumber (Chinese Long) v3cucmeB016
MELO3C026091Cucumber (Chinese Long) v3cucmeB029
MELO3C026091Watermelon (97103) v2mewmbB138
MELO3C026091Watermelon (97103) v2mewmbB139
MELO3C026091Watermelon (97103) v2mewmbB145
MELO3C026091Wax gourdmewgoB185
MELO3C026091Cucumber (Gy14) v1cgymeB018
MELO3C026091Cucumber (Gy14) v1cgymeB527
MELO3C026091Cucumber (Gy14) v1cgymeB528
MELO3C026091Cucurbita maxima (Rimu)cmameB203
MELO3C026091Cucurbita maxima (Rimu)cmameB361
MELO3C026091Cucurbita maxima (Rimu)cmameB367
MELO3C026091Cucurbita maxima (Rimu)cmameB369
MELO3C026091Cucurbita moschata (Rifu)cmomeB189
MELO3C026091Cucurbita moschata (Rifu)cmomeB358
MELO3C026091Wild cucumber (PI 183967)cpimeB017
MELO3C026091Wild cucumber (PI 183967)cpimeB031
MELO3C026091Wild cucumber (PI 183967)cpimeB451
MELO3C026091Cucumber (Chinese Long) v2cumeB000
MELO3C026091Watermelon (Charleston Gray)mewcgB136
MELO3C026091Watermelon (Charleston Gray)mewcgB137
MELO3C026091Watermelon (Charleston Gray)mewcgB143
MELO3C026091Watermelon (97103) v1mewmB160
MELO3C026091Watermelon (97103) v1mewmB165
MELO3C026091Cucurbita pepo (Zucchini)cpemeB032
MELO3C026091Cucurbita pepo (Zucchini)cpemeB474
MELO3C026091Bottle gourd (USVL1VR-Ls)lsimeB129
MELO3C026091Bottle gourd (USVL1VR-Ls)lsimeB176
MELO3C026091Bottle gourd (USVL1VR-Ls)lsimeB184
MELO3C026091Cucumber (Gy14) v2cgybmeB016
MELO3C026091Cucumber (Gy14) v2cgybmeB029
MELO3C026091Cucumber (Gy14) v2cgybmeB396
MELO3C026091Silver-seed gourdcarmeB0047
MELO3C026091Silver-seed gourdcarmeB0050