MELO3C026033.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026033.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	At2g21820
Location	chr08 : 28915851 .. 28916087 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGAGCTCAGGGCGCCCAGCCGAAGGAATCGTTCACGGCCACCACTTACGAGTCGGTGTCCGGTGGAGAGAACCGCACGAGAACCGATATCCGTTCCCGGGAGGACGCGGGAATGATTCAGATCGATAAACTTCAGGATAAAGTGGAAGACGCCGCAGGGAAAGGGGGTCCGGTGTTCGGTGCTGGGAAAGAAGACAAAAAGCAAGACCTTGGAGTTACGGGCACTGGATAA

mRNA sequence

ATGTCAGGAGCTCAGGGCGCCCAGCCGAAGGAATCGTTCACGGCCACCACTTACGAGTCGGTGTCCGGTGGAGAGAACCGCACGAGAACCGATATCCGTTCCCGGGAGGACGCGGGAATGATTCAGATCGATAAACTTCAGGATAAAGTGGAAGACGCCGCAGGGAAAGGGGGTCCGGTGTTCGGTGCTGGGAAAGAAGACAAAAAGCAAGACCTTGGAGTTACGGGCACTGGATAA

Coding sequence (CDS)

ATGTCAGGAGCTCAGGGCGCCCAGCCGAAGGAATCGTTCACGGCCACCACTTACGAGTCGGTGTCCGGTGGAGAGAACCGCACGAGAACCGATATCCGTTCCCGGGAGGACGCGGGAATGATTCAGATCGATAAACTTCAGGATAAAGTGGAAGACGCCGCAGGGAAAGGGGGTCCGGTGTTCGGTGCTGGGAAAGAAGACAAAAAGCAAGACCTTGGAGTTACGGGCACTGGATAA

Protein sequence

MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPVFGAGKEDKKQDLGVTGTG

Homology

[Close]

BLAST of MELO3C026033.2 vs. NCBI nr
Match: XP_008464243.1 (PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 1.7e-33
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGKEDKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of MELO3C026033.2 vs. NCBI nr
Match: XP_011653711.1 (PREDICTED: uncharacterized protein LOC101209719 [Cucumis sativus] >KGN54423.1 hypothetical protein Csa_4G314500 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 6.4e-33
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDK+QDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of MELO3C026033.2 vs. NCBI nr
Match: XP_022949816.1 (uncharacterized protein LOC111453100 [Cucurbita moschata])

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK+DKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of MELO3C026033.2 vs. NCBI nr
Match: XP_023544782.1 (uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 1.6e-31
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK+DKKQDLGV+GTG
Sbjct: 61 FGAGKDDKKQDLGVSGTG 78

[Close]

BLAST of MELO3C026033.2 vs. NCBI nr
Match: XP_022978324.1 (uncharacterized protein LOC111478345 [Cucurbita maxima])

HSP 1 Score: 142.9 bits (359), Expect = 4.6e-31
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPK+SFTATTYESV GGENRTRTD+RSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKDSFTATTYESVPGGENRTRTDLRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK++KKQDLGV+GTG
Sbjct: 61 FGAGKDEKKQDLGVSGTG 78

[Close]

BLAST of MELO3C026033.2 vs. TAIR10
Match: AT2G21820.1 (unknown protein)

HSP 1 Score: 123.2 bits (308), Expect = 6.9e-29
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGA+P +S TATTYESV GG+N+T+ DIRS+ED G IQ+DKLQDKV DAAG GGPV
Sbjct: 1  MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of MELO3C026033.2 vs. TrEMBL
Match: tr|A0A1S3CL14|A0A1S3CL14_CUCME (uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGKEDKKQDLGVTGTG
Sbjct: 61 FGAGKEDKKQDLGVTGTG 78

[Close]

BLAST of MELO3C026033.2 vs. TrEMBL
Match: tr|A0A0A0KY41|A0A0A0KY41_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.3e-33
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDK+QDKVEDAAGKGGPV
Sbjct: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKIQDKVEDAAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK+DKKQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78

[Close]

BLAST of MELO3C026033.2 vs. TrEMBL
Match: tr|A0A1U8A3E6|A0A1U8A3E6_NELNU (uncharacterized protein LOC104599822 OS=Nelumbo nucifera OX=4432 GN=LOC104599822 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKESFTAT YESV GG+N+TRTDIRS+ED G IQ+D LQDKV+DAAGKGGP+
Sbjct: 1  MSGAQGAQPKESFTATIYESVQGGDNKTRTDIRSKEDVGGIQVDSLQDKVKDAAGKGGPI 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAG ED KQDLGVTGTG
Sbjct: 61 FGAGNEDNKQDLGVTGTG 78

[Close]

BLAST of MELO3C026033.2 vs. TrEMBL
Match: tr|V7BVR5|V7BVR5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G044200g PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-26
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKES TATTYES+ GGENRT+TD+RSRED G IQ++KLQ+KV D AGKGGPV
Sbjct: 1  MSGAQGAQPKESKTATTYESIEGGENRTKTDLRSREDQGCIQVEKLQEKVSDPAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK++ KQDLGVTGTG
Sbjct: 61 FGAGKDEDKQDLGVTGTG 78

[Close]

BLAST of MELO3C026033.2 vs. TrEMBL
Match: tr|Q9SWB2|Q9SWB2_SOYBN (Seed maturation protein PM41 OS=Glycine max OX=3847 GN=PM41 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.9e-26
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 1  MSGAQGAQPKESFTATTYESVSGGENRTRTDIRSREDAGMIQIDKLQDKVEDAAGKGGPV 60
          MSGAQGAQPKES TATTYESV GGENRTRTD+ SRED G IQ++KLQ+KV D AGKGGPV
Sbjct: 1  MSGAQGAQPKESKTATTYESVEGGENRTRTDLLSREDQGCIQVEKLQEKVHDPAGKGGPV 60

Query: 61 FGAGKEDKKQDLGVTGTG 79
          FGAGK++ KQDLGVTGTG
Sbjct: 61 FGAGKDEDKQDLGVTGTG 78

The following BLAST results are available for this feature:

BLAST of MELO3C026033.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464243.1	1.7e-33	100.00	PREDICTED: uncharacterized protein LOC103502173 [Cucumis melo]	[more]
XP_011653711.1	6.4e-33	97.44	PREDICTED: uncharacterized protein LOC101209719 [Cucumis sativus] >KGN54423.1 hy...	[more]
XP_022949816.1	1.6e-31	93.59	uncharacterized protein LOC111453100 [Cucurbita moschata]	[more]
XP_023544782.1	1.6e-31	93.59	uncharacterized protein LOC111804271 [Cucurbita pepo subsp. pepo]	[more]
XP_022978324.1	4.6e-31	92.31	uncharacterized protein LOC111478345 [Cucurbita maxima]	[more]

BLAST of MELO3C026033.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21820.1	6.9e-29	79.49	unknown protein	[more]

BLAST of MELO3C026033.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C026033.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CL14\|A0A1S3CL14_CUCME	1.1e-33	100.00	uncharacterized protein LOC103502173 OS=Cucumis melo OX=3656 GN=LOC103502173 PE=...	[more]
tr\|A0A0A0KY41\|A0A0A0KY41_CUCSA	4.3e-33	97.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G314500 PE=4 SV=1	[more]
tr\|A0A1U8A3E6\|A0A1U8A3E6_NELNU	1.2e-27	83.33	uncharacterized protein LOC104599822 OS=Nelumbo nucifera OX=4432 GN=LOC104599822...	[more]
tr\|V7BVR5\|V7BVR5_PHAVU	1.7e-26	80.77	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_005G044200g PE=4 ...	[more]
tr\|Q9SWB2\|Q9SWB2_SOYBN	3.9e-26	82.05	Seed maturation protein PM41 OS=Glycine max OX=3847 GN=PM41 PE=2 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C026033.2.1	MELO3C026033.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	PANTHER	PTHR36012	FAMILY NOT NAMED	coord: 1..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C026033.2	Csa4G314500	Cucumber (Chinese Long) v2	cumedB319
MELO3C026033.2	CSPI04G16280	Wild cucumber (PI 183967)	cpimedB322
MELO3C026033.2	Cucsa.130290	Cucumber (Gy14) v1	cgymedB207
MELO3C026033.2	CmaCh03G003150	Cucurbita maxima (Rimu)	cmamedB693
MELO3C026033.2	CmoCh03G003280	Cucurbita moschata (Rifu)	cmomedB685
MELO3C026033.2	Lsi01G015900	Bottle gourd (USVL1VR-Ls)	lsimedB164
MELO3C026033.2	Cp4.1LG10g07600	Cucurbita pepo (Zucchini)	cpemedB089
MELO3C026033.2	CsGy4G015600	Cucumber (Gy14) v2	cgybmedB284
MELO3C026033.2	Cla012009	Watermelon (97103) v1	medwmB564
MELO3C026033.2	ClCG04G006620	Watermelon (Charleston Gray)	medwcgB521
MELO3C026033.2	Cla97C04G073210	Watermelon (97103) v2	medwmbB525
MELO3C026033.2	Bhi03G001733	Wax gourd	medwgoB659
MELO3C026033.2	Carg20025	Silver-seed gourd	carmedB0568
MELO3C026033.2	CsaV3_4G026690	Cucumber (Chinese Long) v3	cucmedB324

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C026033.2	Cucurbita maxima (Rimu)	cmamedB324
MELO3C026033.2	Cucurbita maxima (Rimu)	cmamedB798
MELO3C026033.2	Cucurbita maxima (Rimu)	cmamedB876
MELO3C026033.2	Cucurbita maxima (Rimu)	cmamedB899
MELO3C026033.2	Cucurbita moschata (Rifu)	cmomedB311
MELO3C026033.2	Cucurbita moschata (Rifu)	cmomedB795
MELO3C026033.2	Cucurbita moschata (Rifu)	cmomedB866
MELO3C026033.2	Cucurbita moschata (Rifu)	cmomedB888
MELO3C026033.2	Cucurbita pepo (Zucchini)	cpemedB505
MELO3C026033.2	Cucurbita pepo (Zucchini)	cpemedB542
MELO3C026033.2	Cucurbita pepo (Zucchini)	cpemedB959
MELO3C026033.2	Wild cucumber (PI 183967)	cpimedB250
MELO3C026033.2	Wild cucumber (PI 183967)	cpimedB500
MELO3C026033.2	Cucumber (Chinese Long) v2	cumedB248
MELO3C026033.2	Cucumber (Chinese Long) v2	cumedB491
MELO3C026033.2	Melon (DHL92) v3.6.1	medmedB143
MELO3C026033.2	Bottle gourd (USVL1VR-Ls)	lsimedB289
MELO3C026033.2	Bottle gourd (USVL1VR-Ls)	lsimedB291
MELO3C026033.2	Watermelon (Charleston Gray)	medwcgB505
MELO3C026033.2	Watermelon (Charleston Gray)	medwcgB506
MELO3C026033.2	Watermelon (97103) v1	medwmB543
MELO3C026033.2	Silver-seed gourd	carmedB0170
MELO3C026033.2	Silver-seed gourd	carmedB0285
MELO3C026033.2	Silver-seed gourd	carmedB0295
MELO3C026033.2	Cucumber (Chinese Long) v3	cucmedB255
MELO3C026033.2	Watermelon (97103) v2	medwmbB513
MELO3C026033.2	Wax gourd	medwgoB621
MELO3C026033.2	Cucumber (Gy14) v2	cgybmedB224
MELO3C026033.2	Cucumber (Gy14) v2	cgybmedB445
MELO3C026033.2	Cucumber (Gy14) v1	cgymedB314