MELO3C025980 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025980
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTaste receptor type 2 member 39
Locationchr11 : 13086064 .. 13086342 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTGAGAGCTAGGCCGAGATGTCTTGTGCAGTTTGAAGAGGATAAAGTCCAGAGGTTAAGATGCCTCTACCTTAGAGATCGGTTCAACATAAATGAGTCAGAGTTGGACAAAGATTACTCGACACTAAATTTTGAGAGCGACGATAATGCCATGAAGATGTCGCTCTTCTACTTCATTAAGTTGGCCATGATGGAGAGGGAGAGGAGGTTATACATGGATTGGACCATGTTAGGCCTCATCAACGACCTTGAGGACTTTGTGAGCTACAATTAA

mRNA sequence

ATGGGGTTGAGAGCTAGGCCGAGATGTCTTGTGCAGTTTGAAGAGGATAAAGTCCAGAGGTTAAGATGCCTCTACCTTAGAGATCGGTTCAACATAAATGAGTCAGAGTTGGACAAAGATTACTCGACACTAAATTTTGAGAGCGACGATAATGCCATGAAGATGTCGCTCTTCTACTTCATTAAGTTGGCCATGATGGAGAGGGAGAGGAGGTTATACATGGATTGGACCATGTTAGGCCTCATCAACGACCTTGAGGACTTTGTGAGCTACAATTAA

Coding sequence (CDS)

ATGGGGTTGAGAGCTAGGCCGAGATGTCTTGTGCAGTTTGAAGAGGATAAAGTCCAGAGGTTAAGATGCCTCTACCTTAGAGATCGGTTCAACATAAATGAGTCAGAGTTGGACAAAGATTACTCGACACTAAATTTTGAGAGCGACGATAATGCCATGAAGATGTCGCTCTTCTACTTCATTAAGTTGGCCATGATGGAGAGGGAGAGGAGGTTATACATGGATTGGACCATGTTAGGCCTCATCAACGACCTTGAGGACTTTGTGAGCTACAATTAA

Protein sequence

MGLRARPRCLVQFEEDKVQRLRCLYLRDRFNINESELDKDYSTLNFESDDNAMKMSLFYFIKLAMMERERRLYMDWTMLGLINDLEDFVSYN*
Homology
[Close]
BLAST of MELO3C025980 vs. TrEMBL
Match: A0A0A0L7D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G379230 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.4e-23
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 11 VQFEEDKVQRLRCLYLRDRFNINESELDKDYSTLNFESDDNAMKMSLFYFIKLAMMERER 70
          ++F +DK  RLR LYL DR N+N  ELDKDY TL FESD++ +K+SLFYF++LAM+ RER
Sbjct: 6  IEFVDDKALRLRQLYLGDRSNMNGLELDKDYLTLTFESDEDVVKISLFYFVELAMIGRER 65

Query: 71 RLYMDWTMLGLINDLEDFVSYN 93
          R +MDWTMLG+I+DLEDFVSY+
Sbjct: 66 RQHMDWTMLGVIDDLEDFVSYD 87

[Close]
BLAST of MELO3C025980 vs. NCBI nr
Match: gi|700202762|gb|KGN57895.1| (hypothetical protein Csa_3G379230 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 6.3e-23
Identity = 54/82 (65.85%), Postives = 69/82 (84.15%), Query Frame = 1 

Query: 11 VQFEEDKVQRLRCLYLRDRFNINESELDKDYSTLNFESDDNAMKMSLFYFIKLAMMERER 70
          ++F +DK  RLR LYL DR N+N  ELDKDY TL FESD++ +K+SLFYF++LAM+ RER
Sbjct: 6  IEFVDDKALRLRQLYLGDRSNMNGLELDKDYLTLTFESDEDVVKISLFYFVELAMIGRER 65

Query: 71 RLYMDWTMLGLINDLEDFVSYN 93
          R +MDWTMLG+I+DLEDFVSY+
Sbjct: 66 RQHMDWTMLGVIDDLEDFVSYD 87

The following BLAST results are available for this feature:
BLAST of MELO3C025980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7D5_CUCSA4.4e-2365.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G379230 PE=4 SV=1[more]
BLAST of MELO3C025980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202762|gb|KGN57895.1|6.3e-2365.85hypothetical protein Csa_3G379230 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025980T1MELO3C025980T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025980Wax gourdmewgoB107
MELO3C025980Wax gourdmewgoB126
MELO3C025980Melon (DHL92) v3.5.1memeB041
MELO3C025980Cucumber (Gy14) v1cgymeB179
MELO3C025980Cucurbita maxima (Rimu)cmameB451
MELO3C025980Cucurbita maxima (Rimu)cmameB494
MELO3C025980Cucurbita maxima (Rimu)cmameB533
MELO3C025980Cucurbita moschata (Rifu)cmomeB443
MELO3C025980Cucurbita moschata (Rifu)cmomeB482
MELO3C025980Cucurbita moschata (Rifu)cmomeB523
MELO3C025980Wild cucumber (PI 183967)cpimeB419
MELO3C025980Wild cucumber (PI 183967)cpimeB522
MELO3C025980Cucumber (Chinese Long) v2cumeB425
MELO3C025980Cucumber (Chinese Long) v2cumeB448
MELO3C025980Watermelon (Charleston Gray)mewcgB092
MELO3C025980Watermelon (Charleston Gray)mewcgB109
MELO3C025980Watermelon (97103) v1mewmB110
MELO3C025980Watermelon (97103) v1mewmB127
MELO3C025980Cucurbita pepo (Zucchini)cpemeB257
MELO3C025980Cucurbita pepo (Zucchini)cpemeB667
MELO3C025980Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C025980Bottle gourd (USVL1VR-Ls)lsimeB088
MELO3C025980Cucumber (Gy14) v2cgybmeB367
MELO3C025980Cucumber (Gy14) v2cgybmeB454
MELO3C025980Silver-seed gourdcarmeB0197
MELO3C025980Silver-seed gourdcarmeB0350
MELO3C025980Silver-seed gourdcarmeB0799
MELO3C025980Cucumber (Chinese Long) v3cucmeB431
MELO3C025980Cucumber (Chinese Long) v3cucmeB534
MELO3C025980Watermelon (97103) v2mewmbB094
MELO3C025980Watermelon (97103) v2mewmbB111