MELO3C025967 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025967
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVoltage-dependent T-type calcium channel subunit alpha-1H
Locationchr11 : 13443687 .. 13444292 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTCCATTTCGAATTCGAGAGAAGAATTGAAGCTTCGGGAAGCTACAAAGGTAAGTATTTCTTTTAACCCTAATTTAATGTAACTAGGGTTGTGTTTGGTATGCATGTTAATCTCTAAATTAAGTTTAGTTGCAATTAGGGTAAAAATCCGATCTTATTTCCACTATGTTCGTATGCTTTCCATAAAGAGCAACTTCCTCAAGTAGAGGTGAAGGATGGAGTTTGGATTGCAGCAACCCTTCACCACATAATTGTCGTCCACAAGAACAAGGCAAAGTTGAAAGCCCATAAAGCTAAACAAGATGGTAAATCAGAGGTTAAGAAAGTGGATGATGAAGCTGAAGATGAGAGAGAGGAAGAAAAAGTCCCATTAAAACGCAAATGGCAAGGCGAGGAGGAGGTCTTAGAATTGAAGAGAGAGAAATCTTCTAAGGCCAAGGACTCTAAGGATACCTTGCCATCTACGTCTACCATGAGTCCCAAGAAAAAGAATCCCAGAAAATCCCCCTCATCCGTTAAATCCAAATCCTACAAGGCCACTAATTCTCAAACTTCCATCAATCTTTTGCCACCAACCAAACCAGCCAAAATAAACCGTTGA

mRNA sequence

ATGGTGGTCCATTTCGAATTCGAGAGAAGAATTGAAGCTTCGGGAAGCTACAAAGAGCAACTTCCTCAAGTAGAGGTGAAGGATGGAGTTTGGATTGCAGCAACCCTTCACCACATAATTGTCGTCCACAAGAACAAGGCAAAGTTGAAAGCCCATAAAGCTAAACAAGATGGTAAATCAGAGGTTAAGAAAGTGGATGATGAAGCTGAAGATGAGAGAGAGGAAGAAAAAGTCCCATTAAAACGCAAATGGCAAGGCGAGGAGGAGGTCTTAGAATTGAAGAGAGAGAAATCTTCTAAGGCCAAGGACTCTAAGGATACCTTGCCATCTACGTCTACCATGAGTCCCAAGAAAAAGAATCCCAGAAAATCCCCCTCATCCGTTAAATCCAAATCCTACAAGGCCACTAATTCTCAAACTTCCATCAATCTTTTGCCACCAACCAAACCAGCCAAAATAAACCGTTGA

Coding sequence (CDS)

ATGGTGGTCCATTTCGAATTCGAGAGAAGAATTGAAGCTTCGGGAAGCTACAAAGAGCAACTTCCTCAAGTAGAGGTGAAGGATGGAGTTTGGATTGCAGCAACCCTTCACCACATAATTGTCGTCCACAAGAACAAGGCAAAGTTGAAAGCCCATAAAGCTAAACAAGATGGTAAATCAGAGGTTAAGAAAGTGGATGATGAAGCTGAAGATGAGAGAGAGGAAGAAAAAGTCCCATTAAAACGCAAATGGCAAGGCGAGGAGGAGGTCTTAGAATTGAAGAGAGAGAAATCTTCTAAGGCCAAGGACTCTAAGGATACCTTGCCATCTACGTCTACCATGAGTCCCAAGAAAAAGAATCCCAGAAAATCCCCCTCATCCGTTAAATCCAAATCCTACAAGGCCACTAATTCTCAAACTTCCATCAATCTTTTGCCACCAACCAAACCAGCCAAAATAAACCGTTGA

Protein sequence

MVVHFEFERRIEASGSYKEQLPQVEVKDGVWIAATLHHIIVVHKNKAKLKAHKAKQDGKSEVKKVDDEAEDEREEEKVPLKRKWQGEEEVLELKREKSSKAKDSKDTLPSTSTMSPKKKNPRKSPSSVKSKSYKATNSQTSINLLPPTKPAKINR*
Homology
[Close]
BLAST of MELO3C025967 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.7e-16
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 19  EQLPQVEVKDGVWIAATLHHIIVVHKNKAKLKAHKAKQDGKSEVKKVDDEAEDEREEEKV 78
           E+LPQVEVKDG+W+ +TLH II +HKNKAK+K  K K+  K   +  DD+ E+E +++ +
Sbjct: 102 EKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCKVVKEIDDDDVEEEDKKDNI 161

Query: 79  PLKRKWQGEEEVLELKREKSSKAKDS 105
           P KRK Q +E+ L  K+ KSSK +DS
Sbjct: 162 PQKRKRQDKEDDLGSKKAKSSKIEDS 187

[Close]
BLAST of MELO3C025967 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-29
Identity = 76/134 (56.72%), Postives = 92/134 (68.66%), Query Frame = 1 

Query: 19  EQLPQVEVKDGVWIAATLHHIIVVHKNKAKLKAHKAKQDGKSEVKKVDDEAEDEREEEKV 78
           ++L QV+VKD +  ++TLH II +HKNKAKLK  K KQDGKS+VK VDDE E+E+E++ V
Sbjct: 3   DKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSKVKTVDDEDEEEKEKDDV 62

Query: 79  PLKRKWQGEEEVLELKREKSSKAKDSKDTLPSTSTMSPKKKNPRKSPSSVKSKSYKATNS 138
           PLKRK QGEEE L  K+ K+ K KDSK+   ST T SPKKK     PS  K KS KAT+S
Sbjct: 63  PLKRKRQGEEEALGSKKIKTFKDKDSKENFLSTFTKSPKKKKLTNLPSLNKYKSSKATSS 122

Query: 139 QTSINLLPPTKPAK 153
           QT      P  P K
Sbjct: 123 QTPTKSKTPPPPPK 136

[Close]
BLAST of MELO3C025967 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.3e-15
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 19  EQLPQVEVKDGVWIAATLHHIIVVHKNKAKLKAHKAKQDGKSEVKKVDDEAEDEREEEKV 78
           E+LPQVEVKDG+W+ +TLH II +HKNKAK+K  K K+  K   +  DD+ E+E +++ +
Sbjct: 102 EKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCKVVKEIDDDDVEEEDKKDNI 161

Query: 79  PLKRKWQGEEEVLELKREKSSKAKDS 105
           P KRK Q +E+ L  K+ KSSK +DS
Sbjct: 162 PQKRKRQDKEDDLGSKKAKSSKIEDS 187

The following BLAST results are available for this feature:
BLAST of MELO3C025967 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN0_CUCSA8.7e-1651.16Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
BLAST of MELO3C025967 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123193|ref|XP_008461541.1|1.2e-2956.72PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
gi|700202594|gb|KGN57727.1|1.3e-1551.16hypothetical protein Csa_3G263250 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025967T1MELO3C025967T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 55..75
score: -coord: 152..155
scor