MELO3C025966 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025966
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	60 kDa chaperonin 2
Location	chr11 : 13450146 .. 13450406 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGACTATTGATGACCCACTCCAACGGGAAAAAGAAGAAGTCCCTGAGGACGTTGGTGAGAAAAGTCTCCCCTCATCGGGTAAATCAATCCCAGAGGCCTCAACACAGTTAGACAAGCTAAAGGAGGCGGTGAGAGAAGAGGAAGAAGTTAGCGCAGACTATGTCTTTATGTTCATAGATGAGTACATTTGTAAACCATTAGAGAGAGGATTTAAAGATATATTCCAGTGCAAGAGTAACTTGCAAGAAATGTAA

mRNA sequence

ATGAAGGAGACTATTGATGACCCACTCCAACGGGAAAAAGAAGAAGTCCCTGAGGACGTTGGTGAGAAAAGTCTCCCCTCATCGGGTAAATCAATCCCAGAGGCCTCAACACAGTTAGACAAGCTAAAGGAGGCGGTGAGAGAAGAGGAAGAAGTTAGCGCAGACTATGTCTTTATGTTCATAGATGAGTACATTTGTAAACCATTAGAGAGAGGATTTAAAGATATATTCCAGTGCAAGAGTAACTTGCAAGAAATGTAA

Coding sequence (CDS)

ATGAAGGAGACTATTGATGACCCACTCCAACGGGAAAAAGAAGAAGTCCCTGAGGACGTTGGTGAGAAAAGTCTCCCCTCATCGGGTAAATCAATCCCAGAGGCCTCAACACAGTTAGACAAGCTAAAGGAGGCGGTGAGAGAAGAGGAAGAAGTTAGCGCAGACTATGTCTTTATGTTCATAGATGAGTACATTTGTAAACCATTAGAGAGAGGATTTAAAGATATATTCCAGTGCAAGAGTAACTTGCAAGAAATGTAA

Protein sequence

MKETIDDPLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVREEEEVSADYVFMFIDEYICKPLERGFKDIFQCKSNLQEM*

Homology

[Close]

BLAST of MELO3C025966 vs. TrEMBL
Match: A0A0A0LD97_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G432440 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 5  IDD-PLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVRE--EEEVSADYVFMFI 64
          IDD PL +E+E + E+ GE  LPS  K I EAST+ DK KEA++E  EE V  DY+F FI
Sbjct: 2  IDDYPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKENDEEVVDDDYIFYFI 61

Query: 65 DEYICKPLE 71
          + ++CKP+E
Sbjct: 62 NHHVCKPME 70

[Close]

BLAST of MELO3C025966 vs. TrEMBL
Match: A0A0A0LIB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G147400 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-09
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 1   MKETIDDPLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVR-EEEEVSADYVFM 60
           ++E ++DP QREK    E  GE  +PSS K+  E     D + E VR +EEEV  +YVF 
Sbjct: 69  LEEAVNDPFQREKVIASELDGETCIPSSPKTTIETPELKDTMTEDVRKDEEEVDENYVFK 128

Query: 61  FIDEYICKPLERGFK 75
            +D Y+CKP+E+G K
Sbjct: 129 LVDHYVCKPMEKGLK 143

[Close]

BLAST of MELO3C025966 vs. NCBI nr
Match: gi|700202878|gb|KGN58011.1| (hypothetical protein Csa_3G432440 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-09
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1


Query: 5  IDD-PLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVRE--EEEVSADYVFMFI 64
          IDD PL +E+E + E+ GE  LPS  K I EAST+ DK KEA++E  EE V  DY+F FI
Sbjct: 2  IDDYPLYKERETISEEGGETHLPSLPKEIVEASTKDDKNKEAMKENDEEVVDDDYIFYFI 61

Query: 65 DEYICKPLE 71
          + ++CKP+E
Sbjct: 62 NHHVCKPME 70

[Close]

BLAST of MELO3C025966 vs. NCBI nr
Match: gi|700206374|gb|KGN61493.1| (hypothetical protein Csa_2G147400 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.3e-09
Identity = 34/75 (45.33%), Postives = 47/75 (62.67%), Query Frame = 1


Query: 1   MKETIDDPLQREKEEVPEDVGEKSLPSSGKSIPEASTQLDKLKEAVR-EEEEVSADYVFM 60
           ++E ++DP QREK    E  GE  +PSS K+  E     D + E VR +EEEV  +YVF 
Sbjct: 69  LEEAVNDPFQREKVIASELDGETCIPSSPKTTIETPELKDTMTEDVRKDEEEVDENYVFK 128

Query: 61  FIDEYICKPLERGFK 75
            +D Y+CKP+E+G K
Sbjct: 129 LVDHYVCKPMEKGLK 143

The following BLAST results are available for this feature:

BLAST of MELO3C025966 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD97_CUCSA	3.4e-09	53.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G432440 PE=4 SV=1	[more]
A0A0A0LIB3_CUCSA	5.8e-09	45.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G147400 PE=4 SV=1	[more]

BLAST of MELO3C025966 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202878\|gb\|KGN58011.1\|	4.8e-09	53.62	hypothetical protein Csa_3G432440 [Cucumis sativus]	[more]
gi\|700206374\|gb\|KGN61493.1\|	8.3e-09	45.33	hypothetical protein Csa_2G147400 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025966T1	MELO3C025966T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 32..52 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025966	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C025966	Cucurbita pepo (Zucchini)	cpemeB667
MELO3C025966	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C025966	Bottle gourd (USVL1VR-Ls)	lsimeB088
MELO3C025966	Cucumber (Gy14) v2	cgybmeB367
MELO3C025966	Cucumber (Gy14) v2	cgybmeB454
MELO3C025966	Silver-seed gourd	carmeB0197
MELO3C025966	Silver-seed gourd	carmeB0350
MELO3C025966	Silver-seed gourd	carmeB0799
MELO3C025966	Cucumber (Chinese Long) v3	cucmeB431
MELO3C025966	Cucumber (Chinese Long) v3	cucmeB534
MELO3C025966	Watermelon (97103) v2	mewmbB094
MELO3C025966	Watermelon (97103) v2	mewmbB111
MELO3C025966	Wax gourd	mewgoB107
MELO3C025966	Wax gourd	mewgoB126
MELO3C025966	Melon (DHL92) v3.5.1	memeB041
MELO3C025966	Cucumber (Gy14) v1	cgymeB119
MELO3C025966	Cucumber (Gy14) v1	cgymeB179
MELO3C025966	Cucurbita maxima (Rimu)	cmameB451
MELO3C025966	Cucurbita maxima (Rimu)	cmameB494
MELO3C025966	Cucurbita maxima (Rimu)	cmameB533
MELO3C025966	Cucurbita moschata (Rifu)	cmomeB443
MELO3C025966	Cucurbita moschata (Rifu)	cmomeB482
MELO3C025966	Cucurbita moschata (Rifu)	cmomeB523
MELO3C025966	Wild cucumber (PI 183967)	cpimeB419
MELO3C025966	Wild cucumber (PI 183967)	cpimeB522
MELO3C025966	Cucumber (Chinese Long) v2	cumeB448
MELO3C025966	Watermelon (Charleston Gray)	mewcgB092
MELO3C025966	Watermelon (Charleston Gray)	mewcgB109
MELO3C025966	Watermelon (97103) v1	mewmB110