MELO3C025959 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025959
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionC2H2 and C2HC zinc fingers superfamily protein
Locationchr11 : 13544359 .. 13544646 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCGGGGTAGACCTCGAAAGTACTCTGTTGTAGAAGCTAGTAACGTTGCTAGAGGAGCAACTATGAGGAGTGAGGAGTCTGATGCCGAATCGAGTCATCCCCATGTAGAGGGGAATATGGAAGAGCATTTTCTTGGTAGACTTGCTCAAAGATTGGCTTTGGGGATTAAATCGACACAAGCAGACCCAGAAAAGAAAAATGGAATAGAACAGTTGAAGGCTCTAGGTGCTACCAGTTTTGTAAGACAACAAATCCTGTGGATGCTGAAGCATGGCTTACTTTGA

mRNA sequence

ATGTCGCGGGGTAGACCTCGAAAGTACTCTGTTGTAGAAGCTAGTAACGTTGCTAGAGGAGCAACTATGAGGAGTGAGGAGTCTGATGCCGAATCGAGTCATCCCCATGTAGAGGGGAATATGGAAGAGCATTTTCTTGGTAGACTTGCTCAAAGATTGGCTTTGGGGATTAAATCGACACAAGCAGACCCAGAAAAGAAAAATGGAATAGAACAGTTGAAGGCTCTAGGTGCTACCAGTTTTGTAAGACAACAAATCCTGTGGATGCTGAAGCATGGCTTACTTTGA

Coding sequence (CDS)

ATGTCGCGGGGTAGACCTCGAAAGTACTCTGTTGTAGAAGCTAGTAACGTTGCTAGAGGAGCAACTATGAGGAGTGAGGAGTCTGATGCCGAATCGAGTCATCCCCATGTAGAGGGGAATATGGAAGAGCATTTTCTTGGTAGACTTGCTCAAAGATTGGCTTTGGGGATTAAATCGACACAAGCAGACCCAGAAAAGAAAAATGGAATAGAACAGTTGAAGGCTCTAGGTGCTACCAGTTTTGTAAGACAACAAATCCTGTGGATGCTGAAGCATGGCTTACTTTGA

Protein sequence

MSRGRPRKYSVVEASNVARGATMRSEESDAESSHPHVEGNMEEHFLGRLAQRLALGIKSTQADPEKKNGIEQLKALGATSFVRQQILWMLKHGLL*
Homology
[Close]
BLAST of MELO3C025959 vs. NCBI nr
Match: gi|659072264|ref|XP_008464580.1| (PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-22
Identity = 58/82 (70.73%), Postives = 64/82 (78.05%), Query Frame = 1 

Query: 1   MSRGRPRKYSVVEASNVARGATMRSEESDAESSHPHVEGNMEEHFLGRLAQRLALGIKST 60
           M RGRPRK+   + SN AR A M S ESDAESS PHVEGNMEE  L RLAQRL  GI+S 
Sbjct: 20  MPRGRPRKHPDAKTSNAAREAAMGSGESDAESSRPHVEGNMEEQLLDRLAQRLISGIRSA 79

Query: 61  QADPEKKNGIEQLKALGATSFV 83
           Q+DPEKK GIE+LKALGAT+FV
Sbjct: 80  QSDPEKKYGIERLKALGATTFV 101

[Close]
BLAST of MELO3C025959 vs. NCBI nr
Match: gi|659068829|ref|XP_008446512.1| (PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 57/83 (68.67%), Postives = 62/83 (74.70%), Query Frame = 1 

Query: 1  MSRGRPRKYSVVEASNVARGATMRSEESDAESSHPHVEGNMEEHFLGRLAQRLALGIKST 60
          M RGRPRK  V EASN AR A M SEE DAESS PHVEGN+EE  L RLAQR    IKST
Sbjct: 1  MPRGRPRKRPVAEASNAAREAAMESEEPDAESSRPHVEGNVEEQLLDRLAQRFVSRIKST 60

Query: 61 QADPEKKNGIEQLKALGATSFVR 84
          Q+D EKK  IE+LKALG+T+F R
Sbjct: 61 QSDLEKKFEIERLKALGSTTFAR 83

[Close]
BLAST of MELO3C025959 vs. NCBI nr
Match: gi|659116534|ref|XP_008458118.1| (PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo])

HSP 1 Score: 58.5 bits (140), Expect = 7.2e-06
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 1 

Query: 1  MSRG-RPRKYSVVEASNVARGATMRSEESDAESSHPHVEGNMEEHFLGRLAQRLALGIKS 60
          MSRG + R+   +    +  G  + +EES+ ESSH   +  ++E  L ++ + +  G++S
Sbjct: 1  MSRGGKKRRLKDLGTQQIPGGRDLENEESEGESSHQQGDMTVDEKLLNKITEGITTGMRS 60

Query: 61 TQADPEKKNGIEQLKALGATSFVR 84
             + EK  GIE+LKALGAT+F R
Sbjct: 61 LNNNLEKTFGIERLKALGATTFAR 84

The following BLAST results are available for this feature:
BLAST of MELO3C025959 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072264|ref|XP_008464580.1|5.5e-2270.73PREDICTED: uncharacterized protein LOC103502419 [Cucumis melo][more]
gi|659068829|ref|XP_008446512.1|1.8e-2068.67PREDICTED: uncharacterized protein LOC103489219 [Cucumis melo][more]
gi|659116534|ref|XP_008458118.1|7.2e-0636.90PREDICTED: uncharacterized protein LOC103497647 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025959T1MELO3C025959T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025959Silver-seed gourdcarmeB0350
MELO3C025959Silver-seed gourdcarmeB0799
MELO3C025959Cucumber (Chinese Long) v3cucmeB431
MELO3C025959Cucumber (Chinese Long) v3cucmeB534
MELO3C025959Watermelon (97103) v2mewmbB094
MELO3C025959Watermelon (97103) v2mewmbB111
MELO3C025959Wax gourdmewgoB107
MELO3C025959Wax gourdmewgoB126
MELO3C025959Melon (DHL92) v3.5.1memeB041
MELO3C025959Cucumber (Gy14) v1cgymeB119
MELO3C025959Cucumber (Gy14) v1cgymeB179
MELO3C025959Cucurbita maxima (Rimu)cmameB451
MELO3C025959Cucurbita maxima (Rimu)cmameB494
MELO3C025959Cucurbita maxima (Rimu)cmameB533
MELO3C025959Cucurbita moschata (Rifu)cmomeB443
MELO3C025959Cucurbita moschata (Rifu)cmomeB482
MELO3C025959Cucurbita moschata (Rifu)cmomeB523
MELO3C025959Wild cucumber (PI 183967)cpimeB419
MELO3C025959Wild cucumber (PI 183967)cpimeB522
MELO3C025959Cucumber (Chinese Long) v2cumeB448
MELO3C025959Watermelon (Charleston Gray)mewcgB092
MELO3C025959Watermelon (Charleston Gray)mewcgB109
MELO3C025959Watermelon (97103) v1mewmB110
MELO3C025959Cucurbita pepo (Zucchini)cpemeB213
MELO3C025959Cucurbita pepo (Zucchini)cpemeB257
MELO3C025959Cucurbita pepo (Zucchini)cpemeB667
MELO3C025959Bottle gourd (USVL1VR-Ls)lsimeB053
MELO3C025959Bottle gourd (USVL1VR-Ls)lsimeB088
MELO3C025959Cucumber (Gy14) v2cgybmeB367
MELO3C025959Cucumber (Gy14) v2cgybmeB454
MELO3C025959Silver-seed gourdcarmeB0197