MELO3C025955 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025955
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	F-box family protein
Location	chr11 : 13666262 .. 13667732 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTTACTGTAATTTCTTGAAAGAGAGAAAGGCAGTAGAGAGAGAAAGGAATTGAGTTTTTTACTCAATTCCAGAATGTACCCCTTATCAAAATCTAAATAGAAGAGAAAATTCATACCAAAAGGTGGTGTTCCATCAAATTGGTATCAGAGCGGTGAATCTTGGGAAGGAAATCAACAATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAACCTGAGATCCTTAACAAAGAGCCTCCGGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATTGATAGTGAGTGAACAAACAGTGAGTGAAAGAATCACAACGAATCTACCAGTGATGAAGAGTATAGTTGAAGGAGGAAGTACACCTATGAAAAGAATCGAGACCGAAGAACAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATCACTCAATTCCTTTGCAGAGAAGACAACAGTTCTTGATGTATAA

mRNA sequence

GATTTACTGTAATTTCTTGAAAGAGAGAAAGGCAGTAGAGAGAGAAAGGAATTGAGTTTTTTACTCAATTCCAGAATGTACCCCTTATCAAAATCTAAATAGAAGAGAAAATTCATACCAAAAGGTGGTGTTCCATCAAATTGGTATCAGAGCGGTGAATCTTGGGAAGGAAATCAACAATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAACCTGAGATCCTTAACAAAGAGCCTCCGGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATTGATAGTGAGTGAACAAACAGTGAGTGAAAGAATCACAACGAATCTACCAGTGATGAAGAGTATAGTTGAAGGAGGAAAGAAGACAACAGTTCTTGATGTATAA

Coding sequence (CDS)

ATGGAGCAAACGCAAATTGAAGAAAAACTGGAAGCCTTTGAACAAGAAGTGATTGGGATGAAGAAAGAATTAAGCAAAATTCCGGCAATTGAAGAAAACCTGAGATCCTTAACAAAGAGCCTCCGGCTGTTAAGAATTCAAGCCGAAAAAAATCAACAATTGTTGTTACAATGCGTTGAAACCATGGTGAAAGAAAAATTGATAGTGAGTGAACAAACAGTGAGTGAAAGAATCACAACGAATCTACCAGTGATGAAGAGTATAGTTGAAGGAGGAAAGAAGACAACAGTTCTTGATGTATAA

Protein sequence

MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLRLLRIQAEKNQQLLLQCVETMVKEKLIVSEQTVSERITTNLPVMKSIVEGGKKTTVLDV*

Homology

[Close]

BLAST of MELO3C025955 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-13
Identity = 41/87 (47.13%), Postives = 63/87 (72.41%), Query Frame = 1


Query: 1  MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLRLLRIQAEKNQQLLLQCVE 60
          M QT+IEE++E+FEQEV G+KKEL+K+P IE  L  LT+++ ++R+Q+EK QQ +L  +E
Sbjct: 1  MVQTRIEERMESFEQEVAGIKKELAKMPVIESTLIELTRNMEMMRLQSEKQQQAILSYME 60

Query: 61 TMVKEKLIVSEQTVSERITTNLPVMKS 88
             KE+ +  E+ ++E  T N P +KS
Sbjct: 61 MNAKERSMAGER-MNESDTQNSPTVKS 86

[Close]

BLAST of MELO3C025955 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 8.4e-13
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1


Query: 1  MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLRLLRIQAEKNQQLLLQCVE 60
          M QT+IEE+LE  +QE+ GMKKELSK+PAIE +L  + KSL L+R+Q+EK QQLL   +E
Sbjct: 1  MVQTRIEERLECIDQEIAGMKKELSKVPAIEMSLSEIAKSLELMRLQSEKQQQLLFTIIE 60

Query: 61 TMVKEKLIVS 71
          T  KE+  +S
Sbjct: 61 TNSKERSTMS 70

[Close]

BLAST of MELO3C025955 vs. NCBI nr
Match: gi|659119521|ref|XP_008459701.1| (PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo])

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1  MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLRLLRIQAEKNQQLLLQCVE 60
          M QT+IEE+LE  +QE+ GMKKELSK+P IE +L  + KS+ L+R+Q+EK QQLL   +E
Sbjct: 1  MVQTRIEERLECIDQEIAGMKKELSKVPVIEVSLNEIAKSVDLMRLQSEKQQQLLFTIIE 60

Query: 61 TMVKEKLIVSEQTVSERI 79
          T  KE+ ++S Q     +
Sbjct: 61 TSSKERSMMSGQATEPTV 78

[Close]

BLAST of MELO3C025955 vs. NCBI nr
Match: gi|659131700|ref|XP_008465811.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-09
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 1  MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLRLLRIQAEKNQQLLLQCVE 60
          M  T+IEE++E F+ E+ G+KKELSK+  I  +L  + K+L L+R Q EK QQ+LL  +E
Sbjct: 1  MVLTRIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFME 60

Query: 61 TMVKEKLIVSEQTVSERITTNLPVMKSIVEGGK 94
          +  KE+       +SER+T +    KS  +G K
Sbjct: 61 SNAKER-----SMMSERLTESAVRDKSTTKGKK 88

[Close]

BLAST of MELO3C025955 vs. NCBI nr
Match: gi|659131694|ref|XP_008465807.1| (PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 3.3e-09
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 1  MEQTQIEEKLEAFEQEVIGMKKELSKIPAIEENLRSLTKSLRLLRIQAEKNQQLLLQCVE 60
          M  T+IEE++E F+ E+ G+KKELSK+  I  +L  + K+L L+R Q EK QQ+LL  +E
Sbjct: 1  MVLTRIEERMEVFDLEIAGLKKELSKMLVINASLSEIMKNLELMRFQTEKQQQVLLMFME 60

Query: 61 TMVKEKLIVSEQTVSERITTNLPVMKSIVEGGK 94
          +  KE+       +SER+T +    KS  +G K
Sbjct: 61 SNAKER-----SMMSERLTESAVRDKSTTKGKK 88

The following BLAST results are available for this feature:

BLAST of MELO3C025955 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659134102\|ref\|XP_008467029.1\|	4.9e-13	47.13	PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]	[more]
gi\|659109397\|ref\|XP_008454696.1\|	8.4e-13	57.14	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]
gi\|659119521\|ref\|XP_008459701.1\|	1.1e-12	50.00	PREDICTED: uncharacterized protein LOC103498741 [Cucumis melo]	[more]
gi\|659131700\|ref\|XP_008465811.1\|	3.3e-09	41.94	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X4 [Cucumis melo]	[more]
gi\|659131694\|ref\|XP_008465807.1\|	3.3e-09	41.94	PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU53899	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025955T1	MELO3C025955T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU53899	MU53899	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 3..23 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025955	Cucurbita maxima (Rimu)	cmameB451
MELO3C025955	Cucurbita maxima (Rimu)	cmameB494
MELO3C025955	Cucurbita maxima (Rimu)	cmameB533
MELO3C025955	Cucurbita moschata (Rifu)	cmomeB443
MELO3C025955	Cucurbita moschata (Rifu)	cmomeB482
MELO3C025955	Cucurbita moschata (Rifu)	cmomeB523
MELO3C025955	Wild cucumber (PI 183967)	cpimeB419
MELO3C025955	Wild cucumber (PI 183967)	cpimeB522
MELO3C025955	Cucumber (Chinese Long) v2	cumeB448
MELO3C025955	Watermelon (Charleston Gray)	mewcgB092
MELO3C025955	Watermelon (Charleston Gray)	mewcgB109
MELO3C025955	Watermelon (97103) v1	mewmB110
MELO3C025955	Cucurbita pepo (Zucchini)	cpemeB213
MELO3C025955	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C025955	Cucurbita pepo (Zucchini)	cpemeB667
MELO3C025955	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C025955	Bottle gourd (USVL1VR-Ls)	lsimeB088
MELO3C025955	Cucumber (Gy14) v2	cgybmeB367
MELO3C025955	Cucumber (Gy14) v2	cgybmeB454
MELO3C025955	Silver-seed gourd	carmeB0197
MELO3C025955	Silver-seed gourd	carmeB0350
MELO3C025955	Silver-seed gourd	carmeB0799
MELO3C025955	Cucumber (Chinese Long) v3	cucmeB431
MELO3C025955	Cucumber (Chinese Long) v3	cucmeB534
MELO3C025955	Watermelon (97103) v2	mewmbB094
MELO3C025955	Watermelon (97103) v2	mewmbB111
MELO3C025955	Wax gourd	mewgoB107
MELO3C025955	Wax gourd	mewgoB126
MELO3C025955	Melon (DHL92) v3.5.1	memeB041
MELO3C025955	Cucumber (Gy14) v1	cgymeB119
MELO3C025955	Cucumber (Gy14) v1	cgymeB179