MELO3C025954.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025954.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr11 : 14037078 .. 14037763 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCGTCAAGGAACTTGAGGCAGAAGAGAAGAAGGCTGAAGCAAAAGAGAAGAAGAAAGCTGAAGAGGAAAAGAGAAAAGAAGAAGAAAGTTTAAGAAGGAAAAAGGAAGAGAAAAAAGCCCTGCGAGAAGAAAGCGCTAAGCGAGAAGAAGAGAGGAGGAAGAAAGAAAGAGAAAAGAAAAAGGTCACAAGGAGGACGCCCATCTCTGCTAAGTGTTTAAAGAGAAAAAAGAAGAATGTTGAATCTTTGGTGGAGACCAAAACCAAATTGGCAGAGATCCAAACCGCTAAGAAAAAGAAAAAAGAGACACTCATGGACCAAAGTGAGCAAGTGGAAAGTGTAGTAGCAAGAAACAAGACTACCATGAGGTTGTGGCTGAAGAGTTTAGTCAAGAAATTGAGAGGATGAGTCCTTTGAAGCCAAGGCTAAGGCCTGAAGAACTAGGGCTCATAAGTGTCGTGCAACCGAAGAAAGGCAAGAATAAGACGGGGGCATTAAGGCACTTAGGTCGTTTGCTCAATTTGCTCTACGAACCCATTAAGGCACTTAAGTCGGAGAAGATTTTCATGGGTGAGACTAAGGTTAGATTGGACATTGTTAATATGTTTTATGCGAGGAAGTATCATCCGGATGATTCATACGCGATAGTGGAAGGGGAGAAGATGCCTTTTACCACATAA

mRNA sequence

ATGAAATTCGTCAAGGAACTTGAGGCAGAAGAGAAGAAGGCTGAAGCAAAAGAGAAGAAGAAAGCTGAAGAGGAAAAGAGAAAAGAAGAAGAAAGTTTAAGAAGGAAAAAGGAAGAGAAAAAAGCCCTGCGAGAAGAAAGCGCTAAGCGAGAAGAAGAGAGGAGGAAGAAAGAAAGAGAAAAGAAAAAGGTCACAAGGAGGACGCCCATCTCTGCTAAGTGTTTAAAGAGAAAAAAGAAGAATGTTGAATCTTTGGTGGAGACCAAAACCAAATTGGCAGAGATCCAAACCGCTAAGAAAAAGAAAAAAGAGACACTCATGGACCAAAAGTTTAGTCAAGAAATTGAGAGGATGAGTCCTTTGAAGCCAAGGCTAAGGCCTGAAGAACTAGGGCTCATAAGTGTCGTGCAACCGAAGAAAGGCAAGAATAAGACGGGGGCATTAAGGCACTTAGGTCGTTTGCTCAATTTGCTCTACGAACCCATTAAGGCACTTAAGTCGGAGAAGATTTTCATGGGTGAGACTAAGGTTAGATTGGACATTGTTAATATGTTTTATGCGAGGAAGTATCATCCGGATGATTCATACGCGATAGTGGAAGGGGAGAAGATGCCTTTTACCACATAA

Coding sequence (CDS)

ATGAAATTCGTCAAGGAACTTGAGGCAGAAGAGAAGAAGGCTGAAGCAAAAGAGAAGAAGAAAGCTGAAGAGGAAAAGAGAAAAGAAGAAGAAAGTTTAAGAAGGAAAAAGGAAGAGAAAAAAGCCCTGCGAGAAGAAAGCGCTAAGCGAGAAGAAGAGAGGAGGAAGAAAGAAAGAGAAAAGAAAAAGGTCACAAGGAGGACGCCCATCTCTGCTAAGTGTTTAAAGAGAAAAAAGAAGAATGTTGAATCTTTGGTGGAGACCAAAACCAAATTGGCAGAGATCCAAACCGCTAAGAAAAAGAAAAAAGAGACACTCATGGACCAAAAGTTTAGTCAAGAAATTGAGAGGATGAGTCCTTTGAAGCCAAGGCTAAGGCCTGAAGAACTAGGGCTCATAAGTGTCGTGCAACCGAAGAAAGGCAAGAATAAGACGGGGGCATTAAGGCACTTAGGTCGTTTGCTCAATTTGCTCTACGAACCCATTAAGGCACTTAAGTCGGAGAAGATTTTCATGGGTGAGACTAAGGTTAGATTGGACATTGTTAATATGTTTTATGCGAGGAAGTATCATCCGGATGATTCATACGCGATAGTGGAAGGGGAGAAGATGCCTTTTACCACATAA

Protein sequence

MKFVKELEAEEKKAEAKEKKKAEEEKRKEEESLRRKKEEKKALREESAKREEERRKKEREKKKVTRRTPISAKCLKRKKKNVESLVETKTKLAEIQTAKKKKKETLMDQKFSQEIERMSPLKPRLRPEELGLISVVQPKKGKNKTGALRHLGRLLNLLYEPIKALKSEKIFMGETKVRLDIVNMFYARKYHPDDSYAIVEGEKMPFTT

Homology

[Close]

BLAST of MELO3C025954.2 vs. NCBI nr
Match: KGN64973.1 (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-11
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 142 KNKTGALRHLGRLLNLLYEPIKALKSEKIFMGETKVRLDIVNMFYARKYHPDDSYAIVEG 201
           K + G L   G L + LY PIKALK EK F  ETKV+ D+V++FYA K+HP +SYAIV+ 
Sbjct: 11  KIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESYAIVDD 70

Query: 202 EKMPFT 208
           E++PFT
Sbjct: 71  ERVPFT 76

[Close]

BLAST of MELO3C025954.2 vs. NCBI nr
Match: KGN57764.1 (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 46/148 (31.08%), Postives = 66/148 (44.59%), Query Frame = 0


Query: 85  LVETKTKLAEIQXXXXXXXETLMD---------------------------QKFSQEIER 144
           L + K+KLAE++       +TL D                           ++ S+EIER
Sbjct: 32  LGDAKSKLAEVRAAKQGKHDTLADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIER 91

Query: 145 MSPLKPRLRPEELGLISVV--------QPKKGKN-----KTGALRHLGRLLNLLYEPIKA 193
           MSP +    P ++              Q K G +     K G L   G L + L+  IKA
Sbjct: 92  MSPTE---SPGQIXXXXXXXXXXXXKRQTKAGTSKQKGGKKGLLSFNGLLPDFLHRSIKA 151

[Close]

BLAST of MELO3C025954.2 vs. TrEMBL
Match: tr|A0A0A0LT82|A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-11
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 142 KNKTGALRHLGRLLNLLYEPIKALKSEKIFMGETKVRLDIVNMFYARKYHPDDSYAIVEG 201
           K + G L   G L + LY PIKALK EK F  ETKV+ D+V++FYA K+HP +SYAIV+ 
Sbjct: 11  KIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESYAIVDD 70

Query: 202 EKMPFT 208
           E++PFT
Sbjct: 71  ERVPFT 76

[Close]

BLAST of MELO3C025954.2 vs. TrEMBL
Match: tr|A0A0A0L9V9|A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 46/148 (31.08%), Postives = 66/148 (44.59%), Query Frame = 0


Query: 85  LVETKTKLAEIQXXXXXXXETLMD---------------------------QKFSQEIER 144
           L + K+KLAE++       +TL D                           ++ S+EIER
Sbjct: 32  LGDAKSKLAEVRAAKQGKHDTLADLSEQVNRVAAVNQTAKQHEIDHLDIVVEELSREIER 91

Query: 145 MSPLKPRLRPEELGLISVV--------QPKKGKN-----KTGALRHLGRLLNLLYEPIKA 193
           MSP +    P ++              Q K G +     K G L   G L + L+  IKA
Sbjct: 92  MSPTE---SPGQIXXXXXXXXXXXXKRQTKAGTSKQKGGKKGLLSFNGLLPDFLHRSIKA 151

The following BLAST results are available for this feature:

BLAST of MELO3C025954.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64973.1	1.7e-11	56.06	hypothetical protein Csa_1G169970 [Cucumis sativus]	[more]
KGN57764.1	1.5e-04	31.08	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]

BLAST of MELO3C025954.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C025954.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C025954.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LT82\|A0A0A0LT82_CUCSA	1.1e-11	56.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1	[more]
tr\|A0A0A0L9V9\|A0A0A0L9V9_CUCSA	1.0e-04	31.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025954.2.1	MELO3C025954.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025954.2	Cucumber (Gy14) v2	cgybmedB368
MELO3C025954.2	Cucumber (Gy14) v2	cgybmedB451
MELO3C025954.2	Cucumber (Gy14) v1	cgymedB116
MELO3C025954.2	Cucumber (Gy14) v1	cgymedB177
MELO3C025954.2	Cucurbita maxima (Rimu)	cmamedB524
MELO3C025954.2	Cucurbita maxima (Rimu)	cmamedB574
MELO3C025954.2	Cucurbita maxima (Rimu)	cmamedB612
MELO3C025954.2	Cucurbita moschata (Rifu)	cmomedB513
MELO3C025954.2	Cucurbita moschata (Rifu)	cmomedB558
MELO3C025954.2	Cucurbita moschata (Rifu)	cmomedB601
MELO3C025954.2	Cucurbita pepo (Zucchini)	cpemedB302
MELO3C025954.2	Cucurbita pepo (Zucchini)	cpemedB797
MELO3C025954.2	Wild cucumber (PI 183967)	cpimedB414
MELO3C025954.2	Wild cucumber (PI 183967)	cpimedB506
MELO3C025954.2	Cucumber (Chinese Long) v2	cumedB405
MELO3C025954.2	Cucumber (Chinese Long) v2	cumedB496
MELO3C025954.2	Melon (DHL92) v3.6.1	medmedB039
MELO3C025954.2	Bottle gourd (USVL1VR-Ls)	lsimedB054
MELO3C025954.2	Bottle gourd (USVL1VR-Ls)	lsimedB094
MELO3C025954.2	Watermelon (Charleston Gray)	medwcgB094
MELO3C025954.2	Watermelon (Charleston Gray)	medwcgB104
MELO3C025954.2	Watermelon (97103) v1	medwmB109
MELO3C025954.2	Silver-seed gourd	carmedB0202
MELO3C025954.2	Silver-seed gourd	carmedB0356
MELO3C025954.2	Silver-seed gourd	carmedB0811
MELO3C025954.2	Cucumber (Chinese Long) v3	cucmedB421
MELO3C025954.2	Cucumber (Chinese Long) v3	cucmedB521
MELO3C025954.2	Watermelon (97103) v2	medwmbB090
MELO3C025954.2	Watermelon (97103) v2	medwmbB103
MELO3C025954.2	Wax gourd	medwgoB108
MELO3C025954.2	Wax gourd	medwgoB128