MELO3C025952 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025952
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding KH domain protein
Location	chr11 : 13732875 .. 13733326 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAGATGATTGTTAATTAATTTATTTTCATTTTCATGTCATGATGAACTTTCTTGAATTTTATATTGCTTATGTTATGTAGGGTTAATTTGATGGTTTTTCTGGTTAGATATCTGGGGATCTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAGGCTTAGAGCCAAACTTTTTGATAGAGAAGGCGCTCTCTCAATCGTTCTGCCTATTCTGCTGTATTTTCCTCTGTCAGCTGATGGTTCAGATAGTCTAAGCTACGATGGTAGAAAAGGTAAAAGACATGGGCGTGGGCAATCATATTCAAGTGGTTATGGGGGTTTCAATGATTTGGCTGGTGGTGATGGTTATGGAAGCTACGGTGGCTCACAAGTACATATATTAACCTTAACATGTCTGATTATAGCAATGGGGACTGTGGTTCCATCTACTTTTAGAGGTTAA

mRNA sequence

ATGGTGCAGATGATTATATCTGGGGATCTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAGGCTTAGAGCCAAACTTTTTGATAGAGAAGGCGCTCTCTCAATCGTTCTGCCTATTCTGCTGTATTTTCCTCTGTCAGCTGATGGTTCAGATAGTCTAAGCTACGATGGTAGAAAAGGTAAAAGACATGGGCGTGGGCAATCATATTCAAGTGGTTATGGGGGTTTCAATGATTTGGCTGGTGGTGATGGTTATGGAAGCTACGGTGGCTCACAAGTACATATATTAACCTTAACATGTCTGATTATAGCAATGGGGACTGTGGTTCCATCTACTTTTAGAGGTTAA

Coding sequence (CDS)

ATGGTGCAGATGATTATATCTGGGGATCTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAGGCTTAGAGCCAAACTTTTTGATAGAGAAGGCGCTCTCTCAATCGTTCTGCCTATTCTGCTGTATTTTCCTCTGTCAGCTGATGGTTCAGATAGTCTAAGCTACGATGGTAGAAAAGGTAAAAGACATGGGCGTGGGCAATCATATTCAAGTGGTTATGGGGGTTTCAATGATTTGGCTGGTGGTGATGGTTATGGAAGCTACGGTGGCTCACAAGTACATATATTAACCTTAACATGTCTGATTATAGCAATGGGGACTGTGGTTCCATCTACTTTTAGAGGTTAA

Protein sequence

MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGRKGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQVHILTLTCLIIAMGTVVPSTFRG*

Homology

[Close]

BLAST of MELO3C025952 vs. TrEMBL
Match: A0A0A0KVM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636640 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 7.3e-39
Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAKEALVHIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR
Sbjct: 480 MVQ--ISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGR 539

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
           +GKRHGRG SYSSGYGGFNDLAGGDGYGSY GSQ+
Sbjct: 540 EGKRHGRGHSYSSGYGGFNDLAGGDGYGSYSGSQI 572

[Close]

BLAST of MELO3C025952 vs. TrEMBL
Match: A0A151TBB2_CAJCA (KH domain-containing protein At4g18375 family OS=Cajanus cajan GN=KK1_018932 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-33
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAK+ALVH++TRLRA LFDREGALS  LP+L Y P+SADGSD L+YDGR
Sbjct: 418 MVQ--ISGDLDVAKDALVHVLTRLRANLFDREGALSAFLPVLPYLPVSADGSDGLNYDGR 477

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQVHILTLT 102
            GK+HGRG SYSSGYGG +DLA GD YGSYGGSQV + + T
Sbjct: 478 DGKKHGRGHSYSSGYGGSSDLAAGDIYGSYGGSQVLLASQT 516

[Close]

BLAST of MELO3C025952 vs. TrEMBL
Match: A0A0B2PVN4_GLYSO (KH domain-containing protein OS=Glycine soja GN=glysoja_016392 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-33
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAK+ALVH++TRLRA LFDREGALS +LP+L Y P+SADGSD L+YDGR
Sbjct: 420 MVQ--ISGDLDVAKDALVHVLTRLRANLFDREGALSALLPVLPYLPVSADGSDGLNYDGR 479

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
            GKRHGRG SYSSGYGG +DLA GD YGSYGGSQ+
Sbjct: 480 DGKRHGRGHSYSSGYGGSSDLAAGDIYGSYGGSQL 512

[Close]

BLAST of MELO3C025952 vs. TrEMBL
Match: I1LWL4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G062200 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.7e-33
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAK+ALVH++TRLRA LFDREGALS  LP+L Y P+SADGSD L+YDGR
Sbjct: 420 MVQ--ISGDLDVAKDALVHVLTRLRANLFDREGALSAFLPVLPYLPVSADGSDGLNYDGR 479

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
            GKRHGRG SYSSGYGG +DLA GD YGSYGGSQ+
Sbjct: 480 DGKRHGRGHSYSSGYGGSSDLAAGDVYGSYGGSQL 512

[Close]

BLAST of MELO3C025952 vs. TrEMBL
Match: V7BZ92_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G030100g PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.9e-33
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAKEALVH++TRLRA +FDREGALS  LP++ Y P+SADGSD L++DGR
Sbjct: 420 MVQ--ISGDLDVAKEALVHVLTRLRANIFDREGALSAFLPVMPYLPVSADGSDGLNFDGR 479

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
            GKRHGRG SYSSGYGG +DL GGD YGSYGGSQ+
Sbjct: 480 DGKRHGRGHSYSSGYGGSSDLTGGDFYGSYGGSQL 512

[Close]

BLAST of MELO3C025952 vs. TAIR10
Match: AT5G15270.2 (AT5G15270.2 RNA-binding KH domain-containing protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-18
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISG+LDVAKEAL+ I +RLRA +FDREGA+S ++P+L Y P++ D  D   YD R
Sbjct: 421 MVQ--ISGELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSR 480

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYG 92
             +R  RG  Y  GYG        +GY  YG
Sbjct: 481 DSRRLERGNPYPGGYGSSG--VSAEGYSPYG 507

[Close]

BLAST of MELO3C025952 vs. NCBI nr
Match: gi|778707291|ref|XP_011655997.1| (PREDICTED: KH domain-containing protein At4g18375 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAKEALVHIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR
Sbjct: 420 MVQ--ISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGR 479

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
           +GKRHGRG SYSSGYGGFNDLAGGDGYGSY GSQ+
Sbjct: 480 EGKRHGRGHSYSSGYGGFNDLAGGDGYGSYSGSQI 512

[Close]

BLAST of MELO3C025952 vs. NCBI nr
Match: gi|700197295|gb|KGN52472.1| (hypothetical protein Csa_5G636640 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.0e-38
Identity = 84/95 (88.42%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAKEALVHIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR
Sbjct: 480 MVQ--ISGDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGR 539

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
           +GKRHGRG SYSSGYGGFNDLAGGDGYGSY GSQ+
Sbjct: 540 EGKRHGRGHSYSSGYGGFNDLAGGDGYGSYSGSQI 572

[Close]

BLAST of MELO3C025952 vs. NCBI nr
Match: gi|659118832|ref|XP_008459330.1| (PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAKEAL+HIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR
Sbjct: 420 MVQ--ISGDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGR 479

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
           +GKRHGRG SYSSGYGGFNDLAGGDGYGSY GSQ+
Sbjct: 480 EGKRHGRGHSYSSGYGGFNDLAGGDGYGSYSGSQI 512

[Close]

BLAST of MELO3C025952 vs. NCBI nr
Match: gi|659118830|ref|XP_008459329.1| (PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 83/95 (87.37%), Postives = 87/95 (91.58%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAKEAL+HIVTRLRA LFDREGALS VLP+L Y PLSADGSDSLSYDGR
Sbjct: 420 MVQ--ISGDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGR 479

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQV 96
           +GKRHGRG SYSSGYGGFNDLAGGDGYGSY GSQ+
Sbjct: 480 EGKRHGRGHSYSSGYGGFNDLAGGDGYGSYSGSQI 512

[Close]

BLAST of MELO3C025952 vs. NCBI nr
Match: gi|1012353151|gb|KYP64339.1| (KH domain-containing protein At4g18375 family [Cajanus cajan])

HSP 1 Score: 149.8 bits (377), Expect = 2.9e-33
Identity = 75/101 (74.26%), Postives = 85/101 (84.16%), Query Frame = 1


Query: 1   MVQMIISGDLDVAKEALVHIVTRLRAKLFDREGALSIVLPILLYFPLSADGSDSLSYDGR 60
           MVQ  ISGDLDVAK+ALVH++TRLRA LFDREGALS  LP+L Y P+SADGSD L+YDGR
Sbjct: 418 MVQ--ISGDLDVAKDALVHVLTRLRANLFDREGALSAFLPVLPYLPVSADGSDGLNYDGR 477

Query: 61  KGKRHGRGQSYSSGYGGFNDLAGGDGYGSYGGSQVHILTLT 102
            GK+HGRG SYSSGYGG +DLA GD YGSYGGSQV + + T
Sbjct: 478 DGKKHGRGHSYSSGYGGSSDLAAGDIYGSYGGSQVLLASQT 516

The following BLAST results are available for this feature:

BLAST of MELO3C025952 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVM1_CUCSA	7.3e-39	88.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636640 PE=4 SV=1	[more]
A0A151TBB2_CAJCA	2.0e-33	74.26	KH domain-containing protein At4g18375 family OS=Cajanus cajan GN=KK1_018932 PE=...	[more]
A0A0B2PVN4_GLYSO	2.0e-33	77.89	KH domain-containing protein OS=Glycine soja GN=glysoja_016392 PE=4 SV=1	[more]
I1LWL4_SOYBN	2.7e-33	77.89	Uncharacterized protein OS=Glycine max GN=GLYMA_13G062200 PE=4 SV=1	[more]
V7BZ92_PHAVU	5.9e-33	75.79	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G030100g PE=4 SV=1	[more]

BLAST of MELO3C025952 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15270.2	1.3e-18	50.55	RNA-binding KH domain-containing protein	[more]

BLAST of MELO3C025952 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778707291\|ref\|XP_011655997.1\|	1.0e-38	88.42	PREDICTED: KH domain-containing protein At4g18375 [Cucumis sativus]	[more]
gi\|700197295\|gb\|KGN52472.1\|	1.0e-38	88.42	hypothetical protein Csa_5G636640 [Cucumis sativus]	[more]
gi\|659118832\|ref\|XP_008459330.1\|	1.4e-38	87.37	PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo]	[more]
gi\|659118830\|ref\|XP_008459329.1\|	1.4e-38	87.37	PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Cucumis melo]	[more]
gi\|1012353151\|gb\|KYP64339.1\|	2.9e-33	74.26	KH domain-containing protein At4g18375 family [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025952T1	MELO3C025952T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 1..99 score: 2.7
None	No IPR available	PANTHER	PTHR10288:SF151	SUBFAMILY NOT NAMED	coord: 1..99 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025952	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C025952	Bottle gourd (USVL1VR-Ls)	lsimeB088
MELO3C025952	Cucumber (Gy14) v2	cgybmeB367
MELO3C025952	Cucumber (Gy14) v2	cgybmeB454
MELO3C025952	Silver-seed gourd	carmeB0197
MELO3C025952	Silver-seed gourd	carmeB0350
MELO3C025952	Silver-seed gourd	carmeB0799
MELO3C025952	Cucumber (Chinese Long) v3	cucmeB431
MELO3C025952	Cucumber (Chinese Long) v3	cucmeB534
MELO3C025952	Watermelon (97103) v2	mewmbB094
MELO3C025952	Watermelon (97103) v2	mewmbB111
MELO3C025952	Wax gourd	mewgoB107
MELO3C025952	Wax gourd	mewgoB126
MELO3C025952	Melon (DHL92) v3.5.1	memeB041
MELO3C025952	Cucumber (Gy14) v1	cgymeB119
MELO3C025952	Cucumber (Gy14) v1	cgymeB179
MELO3C025952	Cucurbita maxima (Rimu)	cmameB451
MELO3C025952	Cucurbita maxima (Rimu)	cmameB494
MELO3C025952	Cucurbita maxima (Rimu)	cmameB533
MELO3C025952	Cucurbita moschata (Rifu)	cmomeB443
MELO3C025952	Cucurbita moschata (Rifu)	cmomeB482
MELO3C025952	Cucurbita moschata (Rifu)	cmomeB523
MELO3C025952	Wild cucumber (PI 183967)	cpimeB419
MELO3C025952	Wild cucumber (PI 183967)	cpimeB522
MELO3C025952	Cucumber (Chinese Long) v2	cumeB448
MELO3C025952	Watermelon (Charleston Gray)	mewcgB092
MELO3C025952	Watermelon (Charleston Gray)	mewcgB109
MELO3C025952	Watermelon (97103) v1	mewmB110
MELO3C025952	Cucurbita pepo (Zucchini)	cpemeB213
MELO3C025952	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C025952	Cucurbita pepo (Zucchini)	cpemeB667