MELO3C025939 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025939
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Pyridoxal biosynthesis lyase PdxS
Location	chr11 : 14003022 .. 14003627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGATACCAAGAAACGTGAGCGAGATAATCTGTGAGCATATCATTGCATGTGTCAAGCATCCTCATGATGCGAGGCCCTTCCCACATTTGATTGAAGAACTTTCTTTGAAGGCATGTATGGCGTTAGAAAAAATCCCTCGGACTGTGGTAAAACATGATATTTGTACAGCAACTAGTCTTCACCACATAATCAATCTCCATAGAAACAAAACAAAAACTAAACGCCTAAAGACGAAGAAAGAAGGAAAAATTAAGATTGTTAATGAAGTGGAGATAGAAGAAGAAGTAGAAGAAGAAGAGAGGGAAAATACACAAGTTCCCTTAAAGCAAAAGAGAAAATGCAAGGAGGAGGCTTCAAGCTCAAAGAAGAAGATAAAATTTGAAGCTAAGGACTCCAGGGACCCATTGTCTCTCGCACTGACCATCTTGCCCCAAGACCAAACGCCTAAAGAAACCATTTCGCCCCCAAAATTCAAAACCACTAAGGCCAAGATCAGAAGCTTACCATCCGGAACTCCACCACCACCACTTTTATCAACTAAAAAACAAACTCCTTCAACATCCAAAACCAAATCGTCTAACCCTTCCTACAAAATCTAA

mRNA sequence

ATGGAGGAGATACCAAGAAACGTGAGCGAGATAATCTGTGAGCATATCATTGCATGTGTCAAGCATCCTCATGATGCGAGGCCCTTCCCACATTTGATTGAAGAACTTTCTTTGAAGGCATGTATGGCGTTAGAAAAAATCCCTCGGACTGTGGTAAAACATGATATTTGTACAGCAACTAGTCTTCACCACATAATCAATCTCCATAGAAACAAAACAAAAACTAAACGCCTAAAGACGAAGAAAGAAGGAAAAATTAAGATTGTTAATGAAGTGGAGATAGAAGAAGAAGTAGAAGAAGAAGAGAGGGAAAATACACAAGTTCCCTTAAAGCAAAAGAGAAAATGCAAGGAGGAGGCTTCAAGCTCAAAGAAGAAGATAAAATTTGAAGCTAAGGACTCCAGGGACCCATTGTCTCTCGCACTGACCATCTTGCCCCAAGACCAAACGCCTAAAGAAACCATTTCGCCCCCAAAATTCAAAACCACTAAGGCCAAGATCAGAAGCTTACCATCCGGAACTCCACCACCACCACTTTTATCAACTAAAAAACAAACTCCTTCAACATCCAAAACCAAATCGTCTAACCCTTCCTACAAAATCTAA

Coding sequence (CDS)

ATGGAGGAGATACCAAGAAACGTGAGCGAGATAATCTGTGAGCATATCATTGCATGTGTCAAGCATCCTCATGATGCGAGGCCCTTCCCACATTTGATTGAAGAACTTTCTTTGAAGGCATGTATGGCGTTAGAAAAAATCCCTCGGACTGTGGTAAAACATGATATTTGTACAGCAACTAGTCTTCACCACATAATCAATCTCCATAGAAACAAAACAAAAACTAAACGCCTAAAGACGAAGAAAGAAGGAAAAATTAAGATTGTTAATGAAGTGGAGATAGAAGAAGAAGTAGAAGAAGAAGAGAGGGAAAATACACAAGTTCCCTTAAAGCAAAAGAGAAAATGCAAGGAGGAGGCTTCAAGCTCAAAGAAGAAGATAAAATTTGAAGCTAAGGACTCCAGGGACCCATTGTCTCTCGCACTGACCATCTTGCCCCAAGACCAAACGCCTAAAGAAACCATTTCGCCCCCAAAATTCAAAACCACTAAGGCCAAGATCAGAAGCTTACCATCCGGAACTCCACCACCACCACTTTTATCAACTAAAAAACAAACTCCTTCAACATCCAAAACCAAATCGTCTAACCCTTCCTACAAAATCTAA

Protein sequence

MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTATSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEASSSKKKIKFEAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSLPSGTPPPPLLSTKKQTPSTSKTKSSNPSYKI*

Homology

[Close]

BLAST of MELO3C025939 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-22
Identity = 64/134 (47.76%), Postives = 94/134 (70.15%), Query Frame = 1


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           M++I  N+ +II  HIIA VKHP  ARPF +LIE+L L+AC+ LEK+P+  VK  I   +
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  SLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEA 120
           +LH II +H+NK K K LKT KEG  K+V E++ +++VEEE++++  +P K+KR+ KE+ 
Sbjct: 118 TLHRIIAIHKNKAKIKCLKT-KEG-CKVVKEID-DDDVEEEDKKD-NIPQKRKRQDKEDD 177

Query: 121 SSSKKKIKFEAKDS 135
             SKK    + +DS
Sbjct: 178 LGSKKAKSSKIEDS 187

[Close]

BLAST of MELO3C025939 vs. TrEMBL
Match: A0A0A0KTK5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G406560 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.6e-12
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 60  TSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEE 119
           T L+ +INLH+NK + KRLK+KK   I    E+E++ + EE E+E  Q PL  KRK K+E
Sbjct: 2   TGLNCMINLHKNKAERKRLKSKKMETIVENKEMEVDNDEEEREKEK-QTPLVHKRKGKDE 61

Query: 120 ASSSKKKIKF-EAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSLPS 173
            S SKK+ K   AK+S+DP  LA+      QT K T S  K  T      +LPS
Sbjct: 62  GSGSKKQEKKPRAKESKDPFPLAIFTPHVAQTTKTTYSLSKSPTRTPTKTTLPS 114

[Close]

BLAST of MELO3C025939 vs. TrEMBL
Match: A0A0A0LHW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 1  MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
          M+EI  N+ +II EHI+A VK P + R F HLI +L LKAC+ALEK+P+  V+  + T  
Sbjct: 11 MKEISVNIGKIISEHILAWVKLPQETRFFLHLINKLRLKACLALEKLPQVKVEDGVWTPL 70

Query: 61 SLHHIINLHRNKTKTK 77
          +LH II   +N++K K
Sbjct: 71 TLHCIIRYSQNQSKDK 86

[Close]

BLAST of MELO3C025939 vs. TrEMBL
Match: A0A0A0L7I4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284530 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 50/154 (32.47%), Postives = 86/154 (55.84%), Query Frame = 1


Query: 52  VKHDICTATSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLK 111
           +K +ICT TSL+ +INLH++K K K LKTK   K +++  ++ + ++++++++  +  L 
Sbjct: 1   MKDEICTITSLNLVINLHKSKAKDKPLKTKNTWK-RLLRMMKWKLKMKKKKKKKKKSHLS 60

Query: 112 QKRKCKEEASSSKKKIKF-EAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSL 171
            + K K      +K+ K    K+S+DPL L +  LP  QT K TI P   KT K    + 
Sbjct: 61  TRGKAKARRPGQRKEEKKPRDKESKDPLPLVVITLPTAQTTKATILPSPSKTPK----TT 120

Query: 172 PSGTPPPPLLSTKKQTPSTSKTKS-----SNPSY 200
            +     P  S++ QT ++ K ++     SNP+Y
Sbjct: 121 TTTNLRTPSFSSQIQTSNSPKIQNVKPFLSNPNY 149

[Close]

BLAST of MELO3C025939 vs. TrEMBL
Match: A0A0A0LY93_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 65  IINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEAS-SS 124
           +INLH+NK K K LKTKK  K+   +EVEIE+  +EE  +  Q PL  KRK  EE S S 
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIED--DEEMEDEMQSPLICKRKGMEEVSRSR 60

Query: 125 KKKIKFEAKDSRDPLSLALTILPQDQTPKETISPPK 160
           KKK K +AKDSR+P+ L +   P  QT   +  P K
Sbjct: 61  KKKKKSKAKDSRNPIPLVIINPPTVQTTTTSPFPSK 94

[Close]

BLAST of MELO3C025939 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 64/134 (47.76%), Postives = 94/134 (70.15%), Query Frame = 1


Query: 1   MEEIPRNVSEIICEHIIACVKHPHDARPFPHLIEELSLKACMALEKIPRTVVKHDICTAT 60
           M++I  N+ +II  HIIA VKHP  ARPF +LIE+L L+AC+ LEK+P+  VK  I   +
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  SLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEA 120
           +LH II +H+NK K K LKT KEG  K+V E++ +++VEEE++++  +P K+KR+ KE+ 
Sbjct: 118 TLHRIIAIHKNKAKIKCLKT-KEG-CKVVKEID-DDDVEEEDKKD-NIPQKRKRQDKEDD 177

Query: 121 SSSKKKIKFEAKDS 135
             SKK    + +DS
Sbjct: 178 LGSKKAKSSKIEDS 187

[Close]

BLAST of MELO3C025939 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 1


Query: 44  LEKIPRTVVKHDICTATSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEER 103
           L+K+ +  VK +I ++++LH II +H+NK K K LKTK++GK K    V+  ++ +EEE+
Sbjct: 2   LDKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSK----VKTVDDEDEEEK 61

Query: 104 ENTQVPLKQKRKCKEEASSSKKKIKFEAKDSRDPLSLALTILPQDQTPKETISPPKFKTT 163
           E   VPLK+KR+ +EEA  SKK   F+ KDS++      T  P+ +      S  K+K++
Sbjct: 62  EKDDVPLKRKRQGEEEALGSKKIKTFKDKDSKENFLSTFTKSPKKKKLTNLPSLNKYKSS 121

Query: 164 KAKIRSLP--SGTPPPPLLSTKKQTPSTS-KTKSSNP 198
           KA     P  S TPPPP   +K  T S   +  SS+P
Sbjct: 122 KATSSQTPTKSKTPPPPPKKSKSPTISQEIQNTSSSP 154

[Close]

BLAST of MELO3C025939 vs. NCBI nr
Match: gi|700195834|gb|KGN51011.1| (hypothetical protein Csa_5G406560 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 51/114 (44.74%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 60  TSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEE 119
           T L+ +INLH+NK + KRLK+KK   I    E+E++ + EE E+E  Q PL  KRK K+E
Sbjct: 2   TGLNCMINLHKNKAERKRLKSKKMETIVENKEMEVDNDEEEREKEK-QTPLVHKRKGKDE 61

Query: 120 ASSSKKKIKF-EAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSLPS 173
            S SKK+ K   AK+S+DP  LA+      QT K T S  K  T      +LPS
Sbjct: 62  GSGSKKQEKKPRAKESKDPFPLAIFTPHVAQTTKTTYSLSKSPTRTPTKTTLPS 114

[Close]

BLAST of MELO3C025939 vs. NCBI nr
Match: gi|700211657|gb|KGN66753.1| (hypothetical protein Csa_1G676915 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 4.6e-10
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 65  IINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLKQKRKCKEEAS-SS 124
           +INLH+NK K K LKTKK  K+   +EVEIE+  +EE  +  Q PL  KRK  EE S S 
Sbjct: 1   MINLHKNKAKNKHLKTKKTEKVIENHEVEIED--DEEMEDEMQSPLICKRKGMEEVSRSR 60

Query: 125 KKKIKFEAKDSRDPLSLALTILPQDQTPKETISPPK 160
           KKK K +AKDSR+P+ L +   P  QT   +  P K
Sbjct: 61  KKKKKSKAKDSRNPIPLVIINPPTVQTTTTSPFPSK 94

[Close]

BLAST of MELO3C025939 vs. NCBI nr
Match: gi|700202635|gb|KGN57768.1| (hypothetical protein Csa_3G284530 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 4.6e-10
Identity = 50/154 (32.47%), Postives = 86/154 (55.84%), Query Frame = 1


Query: 52  VKHDICTATSLHHIINLHRNKTKTKRLKTKKEGKIKIVNEVEIEEEVEEEERENTQVPLK 111
           +K +ICT TSL+ +INLH++K K K LKTK   K +++  ++ + ++++++++  +  L 
Sbjct: 1   MKDEICTITSLNLVINLHKSKAKDKPLKTKNTWK-RLLRMMKWKLKMKKKKKKKKKSHLS 60

Query: 112 QKRKCKEEASSSKKKIKF-EAKDSRDPLSLALTILPQDQTPKETISPPKFKTTKAKIRSL 171
            + K K      +K+ K    K+S+DPL L +  LP  QT K TI P   KT K    + 
Sbjct: 61  TRGKAKARRPGQRKEEKKPRDKESKDPLPLVVITLPTAQTTKATILPSPSKTPK----TT 120

Query: 172 PSGTPPPPLLSTKKQTPSTSKTKS-----SNPSY 200
            +     P  S++ QT ++ K ++     SNP+Y
Sbjct: 121 TTTNLRTPSFSSQIQTSNSPKIQNVKPFLSNPNY 149

The following BLAST results are available for this feature:

BLAST of MELO3C025939 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAN0_CUCSA	1.2e-22	47.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A0A0KTK5_CUCSA	7.6e-12	44.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G406560 PE=4 SV=1	[more]
A0A0A0LHW9_CUCSA	3.2e-10	48.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1	[more]
A0A0A0L7I4_CUCSA	3.2e-10	32.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G284530 PE=4 SV=1	[more]
A0A0A0LY93_CUCSA	3.2e-10	48.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G676915 PE=4 SV=1	[more]

BLAST of MELO3C025939 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202594\|gb\|KGN57727.1\|	1.8e-22	47.76	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|659123193\|ref\|XP_008461541.1\|	2.3e-17	39.49	PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo]	[more]
gi\|700195834\|gb\|KGN51011.1\|	1.1e-11	44.74	hypothetical protein Csa_5G406560 [Cucumis sativus]	[more]
gi\|700211657\|gb\|KGN66753.1\|	4.6e-10	48.96	hypothetical protein Csa_1G676915 [Cucumis sativus]	[more]
gi\|700202635\|gb\|KGN57768.1\|	4.6e-10	32.47	hypothetical protein Csa_3G284530 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025939T1	MELO3C025939T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025939	Watermelon (97103) v1	mewmB110
MELO3C025939	Cucurbita pepo (Zucchini)	cpemeB213
MELO3C025939	Cucurbita pepo (Zucchini)	cpemeB257
MELO3C025939	Cucurbita pepo (Zucchini)	cpemeB601
MELO3C025939	Cucurbita pepo (Zucchini)	cpemeB667
MELO3C025939	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C025939	Bottle gourd (USVL1VR-Ls)	lsimeB088
MELO3C025939	Cucumber (Gy14) v2	cgybmeB367
MELO3C025939	Cucumber (Gy14) v2	cgybmeB454
MELO3C025939	Silver-seed gourd	carmeB0197
MELO3C025939	Silver-seed gourd	carmeB0350
MELO3C025939	Cucumber (Chinese Long) v3	cucmeB431
MELO3C025939	Cucumber (Chinese Long) v3	cucmeB534
MELO3C025939	Watermelon (97103) v2	mewmbB094
MELO3C025939	Watermelon (97103) v2	mewmbB114
MELO3C025939	Wax gourd	mewgoB107
MELO3C025939	Wax gourd	mewgoB126
MELO3C025939	Melon (DHL92) v3.5.1	memeB041
MELO3C025939	Cucumber (Gy14) v1	cgymeB119
MELO3C025939	Cucumber (Gy14) v1	cgymeB179
MELO3C025939	Cucurbita maxima (Rimu)	cmameB085
MELO3C025939	Cucurbita maxima (Rimu)	cmameB451
MELO3C025939	Cucurbita maxima (Rimu)	cmameB494
MELO3C025939	Cucurbita maxima (Rimu)	cmameB533
MELO3C025939	Cucurbita moschata (Rifu)	cmomeB081
MELO3C025939	Cucurbita moschata (Rifu)	cmomeB443
MELO3C025939	Cucurbita moschata (Rifu)	cmomeB482
MELO3C025939	Wild cucumber (PI 183967)	cpimeB419
MELO3C025939	Wild cucumber (PI 183967)	cpimeB522
MELO3C025939	Watermelon (Charleston Gray)	mewcgB092