MELO3C025828 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025828
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Mediator of RNA polymerase II transcription subunit 18
Location	chr4 : 17863297 .. 17863998 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTTCCCCGACCGCTTCTTCCTCAAGGTCTTCAATTCCAAGGAATCCTTCCTCTTATTCTCAAATTGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG

mRNA sequence

ATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTTCCCCGACCGCTTCTTCCTCAAGGTCTTCAATTCCAAGGAATCCTTCCTCTTATTCTCAAATTGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG

Coding sequence (CDS)

ATGGAACCGCCTCTTGGCCGGCAACGGCCACCAAATCAGCGACAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGGAACAATACCTTCCAGGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACGCCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACTGCATTGCTGCATCCCTCTGGGCCAACAACTCCAAATAAGCATGTCGCTTCCCCGACCGCTTCTTCCTCAAGGTCTTCAATTCCAAGGAATCCTTCCTCTTATTCTCAAATTGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCCACGAAGTCTGTAATCAAATATTTCCTCACGAATTGAACTTCTTACCGAAGGATCTTGCAAACACCAGGACCTTCTACGAGTACATTTTAGTTGACTCAAACTCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTACATCTTACTAG

Protein sequence

MEPPLGRQRPPNQRQSPQSNQNNSPQRPPQTIASSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLHPSGPTTPNKHVASPTASSSRSSIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRIFRVLTTSY*

Homology

[Close]

BLAST of MELO3C025828 vs. TrEMBL
Match: A0A0A0LWK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.9e-31
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKN 213
           MVDLTIEPEFDGPSV EVC Q+FPH  NFLP+DL+ TRTFYE+ILVDS SAEITHVPDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 214 DPSKIIYSKLRIFRVLTTSY 234
           DPSKIIYSKLRIF+VLT SY
Sbjct: 61  DPSKIIYSKLRIFQVLTPSY 80

[Close]

BLAST of MELO3C025828 vs. TrEMBL
Match: A0A0A0LUE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.1e-29
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKN 213
           MVDLTIEPEFD PSV E+C QIFPH  NFLP+DLA T+TFYE+ILVDS SAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 214 DPSKIIYSKLRIFRVLTTSY 234
           DP KIIYSKLRIFRVLT SY
Sbjct: 61  DPLKIIYSKLRIFRVLTPSY 80

[Close]

BLAST of MELO3C025828 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 68/156 (43.59%), Postives = 92/156 (58.97%), Query Frame = 1


Query: 34  SSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI 93
           SS G  PS    S+ +S PSPMSA  Y MDL F  V+R R   +   +   ++SS+ PP 
Sbjct: 16  SSKGHRPS----SSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESST-PPR 75

Query: 94  PSTALLHPSGPTTPNKHVASPTASSSRSSIPRNPSSYSQIVR-PKVFQPRPPINGYFTKT 153
           PS  L+ PSG     +  ASP +S+  SS P  P++YSQ V   K F PRP I  YF K+
Sbjct: 76  PSVNLIRPSGGVIQMRPPASP-SSNRESSTP--PTTYSQAVTLDKRFVPRPEIKSYFQKS 135

Query: 154 TMV-DLTIEPEFDGPSVHEVCNQIFPHELNFLPKDL 188
            +V D  IEPE+   ++ E+ ++IFP + NFLP+DL
Sbjct: 136 IVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDL 163

[Close]

BLAST of MELO3C025828 vs. TrEMBL
Match: F6H9U7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 67/195 (34.36%), Postives = 94/195 (48.21%), Query Frame = 1


Query: 48  QSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI-PSTALLHPS---- 107
           Q  + S  +  +YAM   F  VS       Q + + Q  S   PP+ PS + +  S    
Sbjct: 8   QLPSSSKKTKASYAMISNFSNVSPTFP--LQTSNSFQVLSPDFPPLQPSKSFIQASKSNP 67

Query: 108 ------GPTTPNKHVASPTASSSRSSIPRNPSSYSQIVR-PKVFQPRPPINGYFTKTTMV 167
                 G ++P+     P+ S S S  P   SSYSQ V+ PK               T+ 
Sbjct: 68  KNILIQGHSSPSTISTLPSPSQSPSQSPSPSSSYSQYVKKPK---------------TLE 127

Query: 168 DLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDP 227
              IEPEF+   + ++   IFP  +NF   D   TR FYE+IL D++S EITH  DKN+P
Sbjct: 128 IAFIEPEFNFEEIPKILPYIFPPGVNFNSNDPLKTRQFYEFILADTDSVEITHNTDKNNP 185

Query: 228 SKIIYSKLRIFRVLT 231
            +I +SK +I RV+T
Sbjct: 188 QRIAFSKCQILRVMT 185

[Close]

BLAST of MELO3C025828 vs. TrEMBL
Match: A5AGI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022330 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-14
Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = 1


Query: 48  QSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI-PSTALLHPSGPTT 107
           Q  + S  +  +YAM   F  V  R     Q + + Q  S   PP+ PS + +  S  T 
Sbjct: 8   QLPSSSKKTKASYAMISNFSNV--RSTFPLQTSNSFQVLSPDFPPLQPSKSFIQASKSTP 67

Query: 108 PNKHVASPTASSSRSSIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLT-IEPEFDG 167
            N  V   ++ ++ S++P    S SQ   P     +     Y  K   +++  IEPEF+ 
Sbjct: 68  KNIVVQRQSSPNTISTLPSPSQSPSQSHSPSFSYSQ-----YVKKPKTLEIAFIEPEFNF 127

Query: 168 PSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRI 227
             + ++   IFP  +NF   D   TR FYE+ILVD++S EITH  DKN+P +I +SK +I
Sbjct: 128 EEIPKILLYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPHRIAFSKCQI 185

Query: 228 FRVLT 231
            +V+T
Sbjct: 188 LKVMT 185

[Close]

BLAST of MELO3C025828 vs. NCBI nr
Match: gi|700210273|gb|KGN65369.1| (hypothetical protein Csa_1G385050 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKN 213
           MVDLTIEPEFDGPSV EVC Q+FPH  NFLP+DL+ TRTFYE+ILVDS SAEITHVPDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 214 DPSKIIYSKLRIFRVLTTSY 234
           DPSKIIYSKLRIF+VLT SY
Sbjct: 61  DPSKIIYSKLRIFQVLTPSY 80

[Close]

BLAST of MELO3C025828 vs. NCBI nr
Match: gi|700210424|gb|KGN65520.1| (hypothetical protein Csa_1G434180 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 8.7e-29
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKN 213
           MVDLTIEPEFD PSV E+C QIFPH  NFLP+DLA T+TFYE+ILVDS SAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 214 DPSKIIYSKLRIFRVLTTSY 234
           DP KIIYSKLRIFRVLT SY
Sbjct: 61  DPLKIIYSKLRIFRVLTPSY 80

[Close]

BLAST of MELO3C025828 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-18
Identity = 68/156 (43.59%), Postives = 92/156 (58.97%), Query Frame = 1


Query: 34  SSSGTIPSRGKPSTQSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI 93
           SS G  PS    S+ +S PSPMSA  Y MDL F  V+R R   +   +   ++SS+ PP 
Sbjct: 16  SSKGHRPS----SSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESST-PPR 75

Query: 94  PSTALLHPSGPTTPNKHVASPTASSSRSSIPRNPSSYSQIVR-PKVFQPRPPINGYFTKT 153
           PS  L+ PSG     +  ASP +S+  SS P  P++YSQ V   K F PRP I  YF K+
Sbjct: 76  PSVNLIRPSGGVIQMRPPASP-SSNRESSTP--PTTYSQAVTLDKRFVPRPEIKSYFQKS 135

Query: 154 TMV-DLTIEPEFDGPSVHEVCNQIFPHELNFLPKDL 188
            +V D  IEPE+   ++ E+ ++IFP + NFLP+DL
Sbjct: 136 IVVYDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDL 163

[Close]

BLAST of MELO3C025828 vs. NCBI nr
Match: gi|147767380|emb|CAN66723.1| (hypothetical protein VITISV_022330 [Vitis vinifera])

HSP 1 Score: 87.0 bits (214), Expect = 4.6e-14
Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = 1


Query: 48  QSSAPSPMSAENYAMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI-PSTALLHPSGPTT 107
           Q  + S  +  +YAM   F  V  R     Q + + Q  S   PP+ PS + +  S  T 
Sbjct: 8   QLPSSSKKTKASYAMISNFSNV--RSTFPLQTSNSFQVLSPDFPPLQPSKSFIQASKSTP 67

Query: 108 PNKHVASPTASSSRSSIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLT-IEPEFDG 167
            N  V   ++ ++ S++P    S SQ   P     +     Y  K   +++  IEPEF+ 
Sbjct: 68  KNIVVQRQSSPNTISTLPSPSQSPSQSHSPSFSYSQ-----YVKKPKTLEIAFIEPEFNF 127

Query: 168 PSVHEVCNQIFPHELNFLPKDLANTRTFYEYILVDSNSAEITHVPDKNDPSKIIYSKLRI 227
             + ++   IFP  +NF   D   TR FYE+ILVD++S EITH  DKN+P +I +SK +I
Sbjct: 128 EEIPKILLYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPHRIAFSKCQI 185

Query: 228 FRVLT 231
            +V+T
Sbjct: 188 LKVMT 185

[Close]

BLAST of MELO3C025828 vs. NCBI nr
Match: gi|147863969|emb|CAN83211.1| (hypothetical protein VITISV_010890 [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 6.7e-13
Identity = 57/152 (37.50%), Postives = 83/152 (54.61%), Query Frame = 1


Query: 87  SSSLPPI-PSTALLHPSGPTTPNKHVASPTASSSRSSIP---RNPS---SYSQIVR-PKV 146
           S   PP+ PS + +  S  +  N  V S ++ ++ S++P   ++PS   SYSQ V+ PK 
Sbjct: 36  SPDFPPLQPSKSFIQASKSSPKNIVVQSQSSPNTISTLPSPSQSPSPSYSYSQYVKKPK- 95

Query: 147 FQPRPPINGYFTKTTMVDLTIEPEFDGPSVHEVCNQIFPHELNFLPKDLANTRTFYEYIL 206
                         T+    IEPEF+   + ++   IFP  +NF   D   TR FYE+IL
Sbjct: 96  --------------TLEIAFIEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFIL 155

Query: 207 VDSNSAEITHVPDKNDPSKIIYSKLRIFRVLT 231
           VD++S EITH  DKN+P  I +SK +I RV+T
Sbjct: 156 VDTDSVEITHNTDKNNPQXIAFSKCQILRVMT 172

The following BLAST results are available for this feature:

BLAST of MELO3C025828 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWK6_CUCSA	2.9e-31	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1	[more]
A0A0A0LUE7_CUCSA	6.1e-29	82.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1	[more]
E5GCE6_CUCME	2.2e-18	43.59	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
F6H9U7_VITVI	1.4e-14	34.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=...	[more]
A5AGI6_VITVI	3.2e-14	33.51	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022330 PE=4 SV=1	[more]

BLAST of MELO3C025828 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210273\|gb\|KGN65369.1\|	4.2e-31	85.00	hypothetical protein Csa_1G385050 [Cucumis sativus]	[more]
gi\|700210424\|gb\|KGN65520.1\|	8.7e-29	82.50	hypothetical protein Csa_1G434180 [Cucumis sativus]	[more]
gi\|307136323\|gb\|ADN34145.1\|	3.1e-18	43.59	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|147767380\|emb\|CAN66723.1\|	4.6e-14	33.51	hypothetical protein VITISV_022330 [Vitis vinifera]	[more]
gi\|147863969\|emb\|CAN83211.1\|	6.7e-13	37.50	hypothetical protein VITISV_010890 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025828T1	MELO3C025828T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025828	Wax gourd	mewgoB392
MELO3C025828	Cucumber (Gy14) v1	cgymeB560
MELO3C025828	Cucurbita maxima (Rimu)	cmameB230
MELO3C025828	Cucumber (Chinese Long) v2	cumeB220
MELO3C025828	Watermelon (Charleston Gray)	mewcgB342
MELO3C025828	Watermelon (97103) v1	mewmB363
MELO3C025828	Bottle gourd (USVL1VR-Ls)	lsimeB436
MELO3C025828	Cucumber (Gy14) v2	cgybmeB192