MELO3C025821 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025821
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description50S ribosomal protein L15
Locationchr4 : 18019246 .. 18020196 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTGGCCTGTTGGAAGAAGACAAAGCAACAATGAATATGGAAAACTGGTTAGCTCGGGCAAGTGGTTAGCCGAACGCGATGTTGAAATACACAGTTCTTTCAAAAGACAGGCAGCCATTGAATTTGATAACTTCAACCCAAAAGCGGAGCAGTACACCTTCTTCCGCAATTTCGTAATTCCGACCGACGAGTTTGAAATCCCAAAAAACAAATCGTTAATGACAAAGTTGACATTGGAAGGAAATCCCACATATGACAAGGAAATTAATGACAAGGATCTTCCAAAATCGGGTATAAAAAACTCTCAGAGGTCGAAACTGGTAGAAAGATGGATGGAAAAAAGAGTTGTAATTACTACAAACAATGATGAGATGAGTTCTGACCCTGAGCATTCATTTGAAGATATAAATGAGATGGATAGCATATCTGCTAGATCCAGAGGAAAGAGAAAAGTTTGCTTCTTATCACTAAAAAATAAAACCATCTTCTTCAATCCCAATCACGCTCCAGCAAGGCAGACTGAAAGTGCTGAGTCATCAAGAAAAATCAACAGCATTGGGGAACTAAAACAAAGAAAGAAACCAGGCAAAAACAAGGAATATAGGCCAAAGTCCATTATTCCTAGCCTAATTGTAAAACCAACCCAATCGACCCTTTTTTATGACCAAAACAAAGGAGGTGATCTCACTATTAATGTAGGCCACCTATCTCTTATTAATCCACAACTTCATATTCAAATTGAAGATCATACAGACTCCAACCCAGATTTTGTCAACGAAACACAAGACATCGACCCAGAAAAGGATGAAGCTCAAATTGCAAATACAAAAGGTGCTCAAGAAAATTGTTTACAAATAGCTTCATATGAGGTTGACATGACGAACAAAGAAGTAGAAGATGCTTTCAAGGTCAAACTAATCCAGTGGCTCCCGAAGACAACAACCTAA

mRNA sequence

ATGTGGTGGCCTGTTGGAAGAAGACAAAGCAACAATGAATATGGAAAACTGGTTAGCTCGGGCAAGTGGTTAGCCGAACGCGATGTTGAAATACACAGTTCTTTCAAAAGACAGGCAGCCATTGAATTTGATAACTTCAACCCAAAAGCGGAGCAGTACACCTTCTTCCGCAATTTCGTAATTCCGACCGACGAGTTTGAAATCCCAAAAAACAAATCGTTAATGACAAAGTTGACATTGGAAGGAAATCCCACATATGACAAGGAAATTAATGACAAGGATCTTCCAAAATCGGGTATAAAAAACTCTCAGAGGTCGAAACTGGTAGAAAGATGGATGGAAAAAAGAGTTGTAATTACTACAAACAATGATGAGATGAGTTCTGACCCTGAGCATTCATTTGAAGATATAAATGAGATGGATAGCATATCTGCTAGATCCAGAGGAAAGAGAAAAGTTTGCTTCTTATCACTAAAAAATAAAACCATCTTCTTCAATCCCAATCACGCTCCAGCAAGGCAGACTGAAAGTGCTGAGTCATCAAGAAAAATCAACAGCATTGGGGAACTAAAACAAAGAAAGAAACCAGGCAAAAACAAGGAATATAGGCCAAAGTCCATTATTCCTAGCCTAATTGTAAAACCAACCCAATCGACCCTTTTTTATGACCAAAACAAAGGAGGTGATCTCACTATTAATGTAGGCCACCTATCTCTTATTAATCCACAACTTCATATTCAAATTGAAGATCATACAGACTCCAACCCAGATTTTGTCAACGAAACACAAGACATCGACCCAGAAAAGGATGAAGCTCAAATTGCAAATACAAAAGGTGCTCAAGAAAATTGTTTACAAATAGCTTCATATGAGGTTGACATGACGAACAAAGAAGTAGAAGATGCTTTCAAGGTCAAACTAATCCAGTGGCTCCCGAAGACAACAACCTAA

Coding sequence (CDS)

ATGTGGTGGCCTGTTGGAAGAAGACAAAGCAACAATGAATATGGAAAACTGGTTAGCTCGGGCAAGTGGTTAGCCGAACGCGATGTTGAAATACACAGTTCTTTCAAAAGACAGGCAGCCATTGAATTTGATAACTTCAACCCAAAAGCGGAGCAGTACACCTTCTTCCGCAATTTCGTAATTCCGACCGACGAGTTTGAAATCCCAAAAAACAAATCGTTAATGACAAAGTTGACATTGGAAGGAAATCCCACATATGACAAGGAAATTAATGACAAGGATCTTCCAAAATCGGGTATAAAAAACTCTCAGAGGTCGAAACTGGTAGAAAGATGGATGGAAAAAAGAGTTGTAATTACTACAAACAATGATGAGATGAGTTCTGACCCTGAGCATTCATTTGAAGATATAAATGAGATGGATAGCATATCTGCTAGATCCAGAGGAAAGAGAAAAGTTTGCTTCTTATCACTAAAAAATAAAACCATCTTCTTCAATCCCAATCACGCTCCAGCAAGGCAGACTGAAAGTGCTGAGTCATCAAGAAAAATCAACAGCATTGGGGAACTAAAACAAAGAAAGAAACCAGGCAAAAACAAGGAATATAGGCCAAAGTCCATTATTCCTAGCCTAATTGTAAAACCAACCCAATCGACCCTTTTTTATGACCAAAACAAAGGAGGTGATCTCACTATTAATGTAGGCCACCTATCTCTTATTAATCCACAACTTCATATTCAAATTGAAGATCATACAGACTCCAACCCAGATTTTGTCAACGAAACACAAGACATCGACCCAGAAAAGGATGAAGCTCAAATTGCAAATACAAAAGGTGCTCAAGAAAATTGTTTACAAATAGCTTCATATGAGGTTGACATGACGAACAAAGAAGTAGAAGATGCTTTCAAGGTCAAACTAATCCAGTGGCTCCCGAAGACAACAACCTAA

Protein sequence

MWWPVGRRQSNNEYGKLVSSGKWLAERDVEIHSSFKRQAAIEFDNFNPKAEQYTFFRNFVIPTDEFEIPKNKSLMTKLTLEGNPTYDKEINDKDLPKSGIKNSQRSKLVERWMEKRVVITTNNDEMSSDPEHSFEDINEMDSISARSRGKRKVCFLSLKNKTIFFNPNHAPARQTESAESSRKINSIGELKQRKKPGKNKEYRPKSIIPSLIVKPTQSTLFYDQNKGGDLTINVGHLSLINPQLHIQIEDHTDSNPDFVNETQDIDPEKDEAQIANTKGAQENCLQIASYEVDMTNKEVEDAFKVKLIQWLPKTTT*
Homology
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BLAST of MELO3C025821 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 6.9e-13
Identity = 70/270 (25.93%), Postives = 120/270 (44.44%), Query Frame = 1 

Query: 21  GKWLAERDVEIHSSFKRQAAIEFDNFNPKAEQYTFFRNFVIPTD---------EFEIPKN 80
           GKWL ER+V +H +FKRQAA  FD FNP++EQ+ F     I  D         +   P  
Sbjct: 368 GKWLIERNVRLHGTFKRQAAAAFDEFNPESEQFFFEGMEAISPDFLATSSDGRKSSTPDQ 427

Query: 81  KSLMTKLTLEGN--PTYDKEINDKDLPKSGIKNSQRSKLVERWMEKRVVITTNNDEMSSD 140
            S +  + ++ +   T    +N++ +  S +  +     +E      ++   +ND +   
Sbjct: 428 PSALKSVIIKPDKIATSPSLLNEEAVNDSNVHATANKSGLE------ILPGISNDGVLDK 487

Query: 141 PEHSFEDINEMDSISARSRGKRKVCFLSLKNKTIFFNPNHAPARQTESAESSRKINSIGE 200
            +   +      S     + KRKV F S  NKT  FNP+ APA  + S  S  K   +  
Sbjct: 488 GKQKVDIQLPPFSALNLDKSKRKVSFYSPCNKTNIFNPDSAPANHSPSLSSPEKKQKVSR 547

Query: 201 LKQRKK--PGKNKEYRPKSIIPSLIVKPTQSTLFYDQ--NKGGDLTINVGHLSLINPQLH 260
            +  KK  P      +       L ++P Q      +   KG  LT+++G L +++P   
Sbjct: 548 ERSIKKRLPSTQPNSKANQKKGELNIQPIQMMAHEGEASKKGLLLTVDLGDLPILDPNKS 607

Query: 261 IQIEDHTDSNPDFVNETQ-DIDPEKDEAQI 275
            + + H+  N + ++ T  ++ PE  E ++
Sbjct: 608 FE-DHHSSDNAEVIDITNTEVVPETPEMKM 630

The following BLAST results are available for this feature:
BLAST of MELO3C025821 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|6.9e-1325.93PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025821T1MELO3C025821T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025821Cucumber (Gy14) v1cgymeB560
MELO3C025821Cucurbita maxima (Rimu)cmameB230
MELO3C025821Cucumber (Chinese Long) v2cumeB220
MELO3C025821Watermelon (Charleston Gray)mewcgB342
MELO3C025821Watermelon (97103) v1mewmB363
MELO3C025821Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C025821Cucumber (Gy14) v2cgybmeB192
MELO3C025821Wax gourdmewgoB392