MELO3C025819 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025819
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative pectinesterase/pectinesterase inhibitor 12
Locationchr4 : 18059544 .. 18060059 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTGCATTAAGGCATATTTGGAATTGGAAAAACTCCCTCAAGTTGTGGTAAAGGATGGAGTATTAACCCTTCACCGCATAATTGTTATCCACAAAAAGAAGACGAAAACCAAACACCTAAAGACCAAACAAAAAGGCAAAACAGAGATAGTTGATGAAGTGAAAGTAATAGATAAAGAAGAAGAGAGGGAGGAAGATAATATCCCACTGAAACACAAGAGACAATGCAAGGAAGATGCATCTGGATTGATGAGAGTCAAATCCACCAAGGTCAAGGATTCTAAGAACTCTTCGTCTCTCGCATCAACCATCAGTTCCAAAGACCAGACGCCCACAAAAACCTTCTTGCTCTTAAGATCCACATCTAAAACCACCAAGGGAAAAGGGTTTCAATCCTCTCCAAAAATCCAAAAGCCAACTTCCTCCAAATCCAAAGCCACAACGCCTAAACCAACCAGTGAAATTCTATCCTTACTTCCTCTTCAAGGTAAGAACCCAATCAATTTCTTACCTTAG

mRNA sequence

CTTTGCATTAAGGCATATTTGGAATTGGAAAAACTCCCTCAAGTTGTGGTAAAGGATGGAGTATTAACCCTTCACCGCATAATTGTTATCCACAAAAAGAAGACGAAAACCAAACACCTAAAGACCAAACAAAAAGGCAAAACAGAGATAGTTGATGAAGTGAAAGTAATAGATAAAGAAGAAGAGAGGGAGGAAGATAATATCCCACTGAAACACAAGAGACAATGCAAGGAAGATGCATCTGGATTGATGAGAGTCAAATCCACCAAGGTCAAGGATTCTAAGAACTCTTCGTCTCTCGCATCAACCATCAGTTCCAAAGACCAGACGCCCACAAAAACCTTCTTGCTCTTAAGATCCACATCTAAAACCACCAAGGGAAAAGGGTTTCAATCCTCTCCAAAAATCCAAAAGCCAACTTCCTCCAAATCCAAAGCCACAACGCCTAAACCAACCAGTGAAATTCTATCCTTACTTCCTCTTCAAGGTAAGAACCCAATCAATTTCTTACCTTAG

Coding sequence (CDS)

CTTTGCATTAAGGCATATTTGGAATTGGAAAAACTCCCTCAAGTTGTGGTAAAGGATGGAGTATTAACCCTTCACCGCATAATTGTTATCCACAAAAAGAAGACGAAAACCAAACACCTAAAGACCAAACAAAAAGGCAAAACAGAGATAGTTGATGAAGTGAAAGTAATAGATAAAGAAGAAGAGAGGGAGGAAGATAATATCCCACTGAAACACAAGAGACAATGCAAGGAAGATGCATCTGGATTGATGAGAGTCAAATCCACCAAGGTCAAGGATTCTAAGAACTCTTCGTCTCTCGCATCAACCATCAGTTCCAAAGACCAGACGCCCACAAAAACCTTCTTGCTCTTAAGATCCACATCTAAAACCACCAAGGGAAAAGGGTTTCAATCCTCTCCAAAAATCCAAAAGCCAACTTCCTCCAAATCCAAAGCCACAACGCCTAAACCAACCAGTGAAATTCTATCCTTACTTCCTCTTCAAGGTAAGAACCCAATCAATTTCTTACCTTAG

Protein sequence

LCIKAYLELEKLPQVVVKDGVLTLHRIIVIHKKKTKTKHLKTKQKGKTEIVDEVKVIDKEEEREEDNIPLKHKRQCKEDASGLMRVKSTKVKDSKNSSSLASTISSKDQTPTKTFLLLRSTSKTTKGKGFQSSPKIQKPTSSKSKATTPKPTSEILSLLPLQGKNPINFLP*
Homology
[Close]
BLAST of MELO3C025819 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-17
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 1   LCIKAYLELEKLPQVVVKDGVL---TLHRIIVIHKKKTKTKHLKTKQKGKTEIVDEVKVI 60
           LC++A L LEKLPQV VKDG+    TLHRII IHK K K K LKTK+  K  +V E+   
Sbjct: 93  LCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCK--VVKEIDDD 152

Query: 61  DKEEEREEDNIPLKHKRQCKEDASGLMRVKSTKVKDS 95
           D EEE ++DNIP K KRQ KED  G  + KS+K++DS
Sbjct: 153 DVEEEDKKDNIPQKRKRQDKEDDLGSKKAKSSKIEDS 187

[Close]
BLAST of MELO3C025819 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 7.3e-17
Identity = 55/97 (56.70%), Postives = 67/97 (69.07%), Query Frame = 1 

Query: 1   LCIKAYLELEKLPQVVVKDGVL---TLHRIIVIHKKKTKTKHLKTKQKGKTEIVDEVKVI 60
           LC++A L LEKLPQV VKDG+    TLHRII IHK K K K LKTK+  K  +V E+   
Sbjct: 93  LCLRACLMLEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTKEGCK--VVKEIDDD 152

Query: 61  DKEEEREEDNIPLKHKRQCKEDASGLMRVKSTKVKDS 95
           D EEE ++DNIP K KRQ KED  G  + KS+K++DS
Sbjct: 153 DVEEEDKKDNIPQKRKRQDKEDDLGSKKAKSSKIEDS 187

[Close]
BLAST of MELO3C025819 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 63/152 (41.45%), Postives = 88/152 (57.89%), Query Frame = 1 

Query: 9   LEKLPQVVVKDGVL---TLHRIIVIHKKKTKTKHLKTKQKGKTEIVDEVKVIDK--EEER 68
           L+KL QV VKD +L   TLH II IHK K K K LKTKQ GK++    VK +D   EEE+
Sbjct: 2   LDKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSK----VKTVDDEDEEEK 61

Query: 69  EEDNIPLKHKRQCKEDASGLMRVKSTKVKDSKNSSSLASTISSKDQTPTKTFLLLRSTSK 128
           E+D++PLK KRQ +E+A G  ++K+ K KDSK   +  ST +   +    T L   +  K
Sbjct: 62  EKDDVPLKRKRQGEEEALGSKKIKTFKDKDSK--ENFLSTFTKSPKKKKLTNLPSLNKYK 121

Query: 129 TTKGKGFQSSPKIQKPTSSKSKATTPKPTSEI 156
           ++K    Q+  K + P     K+ +P  + EI
Sbjct: 122 SSKATSSQTPTKSKTPPPPPKKSKSPTISQEI 147

The following BLAST results are available for this feature:
BLAST of MELO3C025819 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN0_CUCSA5.1e-1756.70Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
BLAST of MELO3C025819 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202594|gb|KGN57727.1|7.3e-1756.70hypothetical protein Csa_3G263250 [Cucumis sativus][more]
gi|659123193|ref|XP_008461541.1|1.6e-1641.45PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025819T1MELO3C025819T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025819Cucumber (Gy14) v1cgymeB560
MELO3C025819Cucurbita maxima (Rimu)cmameB230
MELO3C025819Cucumber (Chinese Long) v2cumeB220
MELO3C025819Watermelon (Charleston Gray)mewcgB342
MELO3C025819Watermelon (97103) v1mewmB363
MELO3C025819Bottle gourd (USVL1VR-Ls)lsimeB436
MELO3C025819Cucumber (Gy14) v2cgybmeB192
MELO3C025819Wax gourdmewgoB392