MELO3C025792 (gene) Melon (DHL92) v3.5.1

NameMELO3C025792
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr4 : 18690184 .. 18691122 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCCCCCAAACATGTATGGATGAAGGAGGAGGAGGAACTCTAATCGAGTGTTTAGTGGAGTTGGTATCTGCCGGCGAATGGAAGTTGGACAATGGTACATTTCGGCCAGGTTACCTGACCCAACTTGTCTGCATGATGGCAGAAAAGTTGCCTAAATGTCACGTCCAAGCCACCACTGTAATAGAATGCAGAATTAAGACTTTGAAGCAAACCTTCCAAGCTATCGCAGAAATGGGTGGGTCAGCGTGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGTCGAGAAGGAACAATTTGACAACTGGGTTAGGGTAAGGAAATTTGATATTTAAAACGTGACAATACTTGTGCAGTGTACTTTGATTGACAATTTTTAATGGTAGTTTGAAGTGCTCGTGTTTTTTATATAGTCGCATTTAGCAGCGAAAAGGCTCCTTAACAAAGCCTCTTTAACAAACTCTTTCCTTATTATGACAAACTTACATATGTGTTCGAAAGGGATAAGGCAACTGGTCGTCGACGTCGGGTCTAATGAGCCTATCAGGTACGAGGGGTTTGACATGCCGGATGGAAACGATATGAGGTTTCCATCCATGTACAACTAGAGGATTGACATGTTCCAGGATGTTGTACACGCCTCACGACCTACTCGCTTGTCCGACGGTAGGCCTAGATCAAGCAGATCTAAGCGAAAGTGGGGAAGCGAGTGGGAGGGTAAAATTAAGATGATACATATGGTCCTGGAGTGTGCGAATGATCAACTGAGGACCATCGTCGAGTGGCCTTTGTGTGCCCTTGCCAATGACACCGCAGTTCGCCAGGAGTTCTTATGTCTATTGCGTGAGATGCCCGATCCAAGTAGTTTGGATAGGGCGATGTGCCAGAGGCTACTCTTGTGCAGTATGGATGACATACGCAGTTCATAG

mRNA sequence

ATGTGCCCCCAAACATGTATGGATGAAGGAGGAGGAGGAACTCTAATCGAGTGTTTAGTGGAGTTGGTATCTGCCGGCGAATGGAAGTTGGACAATGGTACATTTCGGCCAGGTTACCTGACCCAACTTGTCTGCATGATGGCAGAAAAGTTGCCTAAATGTCACGTCCAAGCCACCACTGTAATAGAATGCAGAATTAAGACTTTGAAGCAAACCTTCCAAGCTATCGCAGAAATGGGTGGGTCAGCGTGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGTCGAGAAGGAACAATTTGACAACTGGGTTAGGGATGTTGTACACGCCTCACGACCTACTCGCTTGTCCGACGGTAGGCCTAGATCAAGCAGATCTAAGCGAAAGTGGGGAAGCGAGTGGGAGGGTAAAATTAAGATGATACATATGGTCCTGGAGTGTGCGAATGATCAACTGAGGACCATCGTCGAGTGGCCTTTGTGTGCCCTTGCCAATGACACCGCAGTTCGCCAGGAGTTCTTATGTCTATTGCGTGAGATGCCCGATCCAAGTAGTTTGGATAGGGCGATGTGCCAGAGGCTACTCTTGTGCAGTATGGATGACATACGCAGTTCATAG

Coding sequence (CDS)

ATGTGCCCCCAAACATGTATGGATGAAGGAGGAGGAGGAACTCTAATCGAGTGTTTAGTGGAGTTGGTATCTGCCGGCGAATGGAAGTTGGACAATGGTACATTTCGGCCAGGTTACCTGACCCAACTTGTCTGCATGATGGCAGAAAAGTTGCCTAAATGTCACGTCCAAGCCACCACTGTAATAGAATGCAGAATTAAGACTTTGAAGCAAACCTTCCAAGCTATCGCAGAAATGGGTGGGTCAGCGTGCAGTGGGTTCGGATGGAACGATGAGGCAAAGTGCATCATTGTCGAGAAGGAACAATTTGACAACTGGGTTAGGGATGTTGTACACGCCTCACGACCTACTCGCTTGTCCGACGGTAGGCCTAGATCAAGCAGATCTAAGCGAAAGTGGGGAAGCGAGTGGGAGGGTAAAATTAAGATGATACATATGGTCCTGGAGTGTGCGAATGATCAACTGAGGACCATCGTCGAGTGGCCTTTGTGTGCCCTTGCCAATGACACCGCAGTTCGCCAGGAGTTCTTATGTCTATTGCGTGAGATGCCCGATCCAAGTAGTTTGGATAGGGCGATGTGCCAGAGGCTACTCTTGTGCAGTATGGATGACATACGCAGTTCATAG

Protein sequence

MCPQTCMDEGGGGTLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRSS*
BLAST of MELO3C025792 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 9.5e-34
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 1

Query: 18  CLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIA 77
           C +ELVS G WK DNGTFRPGYL QLV MMAEKL  C V+ATTVI+CRIKTLK+TFQAIA
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 78  EMGGSACSGFGWNDEAKCIIVEKEQFDNWVR 109
           EM G ACSGFGWNDE KCI+ EKE FDNWVR
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVR 430

BLAST of MELO3C025792 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query: 107 VRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCAL 166
           ++D V ASRP+R S+G+  SS SKRK GS+ +  ++ IH+ L+  N+QLR I EWP   L
Sbjct: 501 LQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNL 560

Query: 167 ANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIR 207
           AND  VR EF  +LREMP+ +SLDRA+ QR LL  MDD+R
Sbjct: 561 ANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLR 600


HSP 2 Score: 145.6 bits (366), Expect = 6.8e-32
Identity = 80/168 (47.62%), Postives = 106/168 (63.10%), Query Frame = 1

Query: 14  TLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTF 73
           TL+ECLV+LV++  W  DNGTF  GY +QL  MMA+K+   ++QATT+  C IKT+++TF
Sbjct: 19  TLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPNIQATTIDSC-IKTMEKTF 78

Query: 74  QAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR------DVVHASRPTRLSDGRPRSS 133
            AI+E+ G +CSGF WNDE   IIVEK+ FDNW++      D    SR  R  DGR  SS
Sbjct: 79  HAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDEFMDSRLGRSGDGRNASS 138

Query: 134 RSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQE 176
           RSKRK          +I   +E ANDQL  IV+WP+    + +  +QE
Sbjct: 139 RSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDASVTQQE 185

BLAST of MELO3C025792 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.5e-26
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query: 15  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQ 74
           L+ECLVELV+AG W+ DNGTFRPGYL QL  MMA K+P  ++ A+T I+ RIK +K+ F 
Sbjct: 375 LVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFH 434

Query: 75  AIAEMGGSACSGFGWNDEAKCIIVEKEQFDNW 107
           A+AEM G  CSGFGWNDE KCI+ EKE FD+W
Sbjct: 435 ALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 465

BLAST of MELO3C025792 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 32/103 (31.07%), Postives = 54/103 (52.43%), Query Frame = 1

Query: 105 NWVRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLC 164
           N   D +  +R  R+S+ R  SS SKRK          ++   +E  N+QL  I EWP+ 
Sbjct: 534 NMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 593

Query: 165 ALANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIRS 208
              + T  RQE +  L  +P+ + +DR    R+L+ ++DD+++
Sbjct: 594 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKA 636


HSP 2 Score: 99.0 bits (245), Expect = 7.3e-18
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1

Query: 15  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQ 74
           L+ CLV L+  G WK +NG F  GYL QL   + E++P C  +    I+ R+KTLK+ F 
Sbjct: 28  LVHCLVRLIQEGSWKAENG-FCTGYLAQLEKWLHERIPTCEFKGNPHIDSRLKTLKRQFH 87

Query: 75  AIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR 109
           AI EM   +  GFGWND+ KCI+ +K+ FDNWV+
Sbjct: 88  AITEMLEPSAGGFGWNDKDKCIVCDKDIFDNWVK 120

BLAST of MELO3C025792 vs. TrEMBL
Match: A0A0A0KNB4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420360 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1

Query: 23  VSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIAEMGGS 82
           +  G W+  NGTF+PGYL Q+  +M EK+P  ++Q T  +E R+K LK+ + AI EM G 
Sbjct: 16  IEEGGWRAYNGTFKPGYLVQVQKLMKEKIPGSNIQVTPNLEPRVKILKKQYTAIVEMMGP 75

Query: 83  ACSGFGWNDEAKCIIVEKEQFDNWVR 109
           +CS FGWN++ KCI  EK  FD+ V+
Sbjct: 76  SCSRFGWNEKRKCIEAEKFVFDDLVK 101

BLAST of MELO3C025792 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 151.8 bits (382), Expect = 1.4e-33
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 1

Query: 18  CLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQAIA 77
           C +ELVS G WK DNGTFRPGYL QLV MMAEKL  C V+ATTVI+CRIKTLK+TFQAIA
Sbjct: 340 CGMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIA 399

Query: 78  EMGGSACSGFGWNDEAKCIIVEKEQFDNWVR 109
           EM G ACSGFGWNDE KCI+ EKE FDNWVR
Sbjct: 400 EMLGPACSGFGWNDEEKCIVAEKELFDNWVR 430

BLAST of MELO3C025792 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1

Query: 107 VRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCAL 166
           ++D V ASRP+R S+G+  SS SKRK GS+ +  ++ IH+ L+  N+QLR I EWP   L
Sbjct: 501 LQDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNL 560

Query: 167 ANDTAVRQEFLCLLREMPDPSSLDRAMCQRLLLCSMDDIR 207
           AND  VR EF  +LREMP+ +SLDRA+ QR LL  MDD+R
Sbjct: 561 ANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLR 600


HSP 2 Score: 145.6 bits (366), Expect = 9.8e-32
Identity = 80/168 (47.62%), Postives = 106/168 (63.10%), Query Frame = 1

Query: 14  TLIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTF 73
           TL+ECLV+LV++  W  DNGTF  GY +QL  MMA+K+   ++QATT+  C IKT+++TF
Sbjct: 19  TLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPNIQATTIDSC-IKTMEKTF 78

Query: 74  QAIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR------DVVHASRPTRLSDGRPRSS 133
            AI+E+ G +CSGF WNDE   IIVEK+ FDNW++      D    SR  R  DGR  SS
Sbjct: 79  HAISEIRGPSCSGFSWNDELNYIIVEKDVFDNWMKGLNMSPDEFMDSRLGRSGDGRNASS 138

Query: 134 RSKRKWGSEWEGKIKMIHMVLECANDQLRTIVEWPLCALANDTAVRQE 176
           RSKRK          +I   +E ANDQL  IV+WP+    + +  +QE
Sbjct: 139 RSKRKRCGRLIEIANIIQNAMEYANDQLNRIVDWPILRNQDASVTQQE 185

BLAST of MELO3C025792 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 6.6e-28
Identity = 56/93 (60.22%), Postives = 77/93 (82.80%), Query Frame = 1

Query: 16  IECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQA 75
           +ECLVELVS+G W+ DNGTF+PGYL QL  MMAEKLP  ++Q ++ I+C +K+LK+T+ A
Sbjct: 21  VECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHA 80

Query: 76  IAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR 109
           IAEM G +CSGFGWN+E +CII E++ FD+W++
Sbjct: 81  IAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIK 113

BLAST of MELO3C025792 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 2.5e-27
Identity = 63/94 (67.02%), Postives = 73/94 (77.66%), Query Frame = 1

Query: 15  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQ 74
           L+ECLVELV+AG W+ DNGTFRP YL QL  MMA K+P  +V A+T I+ RIK LK+ F 
Sbjct: 221 LVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFKIPGSNVHAST-IDSRIKLLKRMFH 280

Query: 75  AIAEMGGSACSGFGWNDEAKCIIVEKEQFDNWVR 109
           AIAEM G  CSGFGWNDE KCI+ EKE FDNWV+
Sbjct: 281 AIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWVK 313

BLAST of MELO3C025792 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 33.9 bits (76), Expect = 4.2e+02
Identity = 20/56 (35.71%), Postives = 29/56 (51.79%), Query Frame = 1

Query: 105 NWVRDVVHASRPTRLSDGRPRSSRSKRKWGSEWEGKIKMIHMVLECANDQLRTIVE 161
           N   D +  +R  R+S+GR  SS SKRK G +      ++   +E  N+QL  I E
Sbjct: 382 NMSPDELMGTRNARVSEGRYVSSGSKRKRGGQAADSGDVLRTAIEYGNEQLNHIAE 437


HSP 2 Score: 127.1 bits (318), Expect = 3.6e-26
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 1

Query: 15  LIECLVELVSAGEWKLDNGTFRPGYLTQLVCMMAEKLPKCHVQATTVIECRIKTLKQTFQ 74
           L+ECLVELV+AG W+ DNGTFRPGYL QL  MMA K+P  ++ A+T I+ RIK +K+ F 
Sbjct: 375 LVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFH 434

Query: 75  AIAEMGGSACSGFGWNDEAKCIIVEKEQFDNW 107
           A+AEM G  CSGFGWNDE KCI+ EKE FD+W
Sbjct: 435 ALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW 465

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME9.5e-3479.12Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GBB2_CUCME1.7e-1954.00Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME2.5e-2664.13Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
E5GCB5_CUCME3.2e-0531.07Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KNB4_CUCSA2.0e-1547.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420360 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|1.4e-3379.12retrotransposon protein [Cucumis melo subsp. melo][more]
gi|307135889|gb|ADN33754.1|2.5e-1954.00retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659082641|ref|XP_008441954.1|6.6e-2860.22PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
gi|659118456|ref|XP_008459129.1|2.5e-2767.02PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo][more]
gi|659118456|ref|XP_008459129.1|4.2e+0235.71PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025792T1MELO3C025792T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 14..109
score: 6.4
NoneNo IPR availablePANTHERPTHR31704:SF16SUBFAMILY NOT NAMEDcoord: 14..109
score: 6.4

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None