MELO3C025678.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C025678.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionmediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr07 : 4152215 .. 4152921 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGCCATCTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAATTTTTTTTACAATTTACAGAGATCGAACAACGTAAGACTTCGTGATGTAGCATATGATCCACAACAAGTCCTTGATTTATTTAATAATAATGAGAGGTACATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCATTAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGATGAACTCGATGAAGTTTACCATAATGTGGAAGAAATGCCTCATACGACACAAACATAGAGCCAAACTGGTTATGGTAGTCCGATGAAGATGATGTCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGATACAAGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGTGGCTATGGGAAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGA

mRNA sequence

ATGACAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGCCATCTGAGATCGAACAACGTAAGACTTCGTGATGTAGCATATGATCCACAACAAGTCCTTGATTTATTTAATAATAATGAGAGGTACATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCATTAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGATGAACTCGATGAAGTTTACCATAATGTGGAAGAAATGCCTCATACGACACAAACATAGAGCCAAACTGGTTATGGTAGTCCGATGAAGATGATGTCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGATACAAGATATTATGATGCAGGGGTCGGTCCATCGTCTTCATACATGGATGTCGGTCCATCTAATTCTTACATGCATGGACATGGACGTGGCTATGGGAAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAAGAGTACCAACAAGAACCAGAGAACCAAGAGGACCGAGAACAACATAGAGTTCAGAGTCGACGTCGA

Coding sequence (CDS)

ATGACAATAGGAGTTTCGATTCAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTGGGCCATCTGAGATCGAACAACGTAAGACTTCGTGATGTAGCATATGATCCACAACAAGTCCTTGATTTATTTAATAATAATGAGAGGTACATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCCATTAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGATGAACTCGATGAAGTTTACCATAATGTGGAAGAAATGCCTCATACGACACAAACATAG

Protein sequence

MTIGVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDLFNNNERYMKEIHNMYDLPIVPPLVHRGRVRVEEDELDEVYHNVEEMPHTTQT
Homology
[Close]
BLAST of MELO3C025678.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 71/110 (64.55%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 4   GVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDLFNN 63
           G  I+QFDMDVTQEYIHWY NI++LYIT+PGAA+ HLRSNN RLR++A DPQQVL++ N+
Sbjct: 13  GPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICND 72

Query: 64  NERYMKEIHNMYDLPIVPPLVHRGRVRVEE-DELDEVYHNVEEMPHTTQT 113
           NE+YM+ IH MYD+PIVP  V R R  V+E D+L+EV  + EE+P  TQT
Sbjct: 73  NEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQT 122

[Close]
BLAST of MELO3C025678.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.8e-28
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 12  MDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDLFNNNERYMKEI 71
           MDVTQEYIHWY NI++LYIT+PGAA+ HLRSNN RLR++A DPQQVL++ N+NE+YM+ I
Sbjct: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 72  HNMYDLPIVPPLVHRGRVRVEE-DELDEVYHNVEEMPHTTQT 113
           H MYD+PIVP  V R R  V+E D+L+EV  + EE+P  TQT
Sbjct: 61  HYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQT 102

[Close]
BLAST of MELO3C025678.2 vs. NCBI nr
Match: XP_008463092.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 3.8e-18
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 4   GVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDLFNN 63
           G  I+QFDMDVTQEYI+WY NI++LYIT+PGAA+ HLRSNN+RLR+VA DPQQVL++ N+
Sbjct: 104 GPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICND 163

Query: 64  NE 66
           NE
Sbjct: 164 NE 165

[Close]
BLAST of MELO3C025678.2 vs. NCBI nr
Match: KGN45851.1 (hypothetical protein Csa_6G014710 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.9e-12
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0 

Query: 42  SNNVRLRDVAYDPQQVLDLFNNNERYMKEIHNMYDLPIVPPLVHRGRVRVEEDELDEVYH 101
           SNN+ L DVA   Q +LD+ NNNERYM+EIH      IVPP V RG VRVEE ELDE+YH
Sbjct: 18  SNNISLHDVADVQQHILDISNNNERYMEEIHY-----IVPPSVRRGHVRVEEVELDEIYH 77

Query: 102 NVEEMPHTTQT 113
           N++E+    QT
Sbjct: 78  NLKELHPMIQT 83

[Close]
BLAST of MELO3C025678.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 41  RSNNVRLRDVAYDPQQVLDLFNNNERYMKEIHNMYDLPIVPPLVHRGRVRVEE-DELDEV 100
           RS N+RL++VA DPQQVL++ N+NE+YM+ IH MY++ IVP LV R R  V+E ++L+EV
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 101 YHNVEEMP 108
             +VEE+P
Sbjct: 222 VQHVEEVP 229

[Close]
BLAST of MELO3C025678.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.8e-32
Identity = 71/110 (64.55%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 4   GVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDLFNN 63
           G  I+QFDMDVTQEYIHWY NI++LYIT+PGAA+ HLRSNN RLR++A DPQQVL++ N+
Sbjct: 13  GPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICND 72

Query: 64  NERYMKEIHNMYDLPIVPPLVHRGRVRVEE-DELDEVYHNVEEMPHTTQT 113
           NE+YM+ IH MYD+PIVP  V R R  V+E D+L+EV  + EE+P  TQT
Sbjct: 73  NEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQT 122

[Close]
BLAST of MELO3C025678.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 66/102 (64.71%), Postives = 83/102 (81.37%), Query Frame = 0 

Query: 12  MDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDLFNNNERYMKEI 71
           MDVTQEYIHWY NI++LYIT+PGAA+ HLRSNN RLR++A DPQQVL++ N+NE+YM+ I
Sbjct: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 72  HNMYDLPIVPPLVHRGRVRVEE-DELDEVYHNVEEMPHTTQT 113
           H MYD+PIVP  V R R  V+E D+L+EV  + EE+P  TQT
Sbjct: 61  HYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQT 102

[Close]
BLAST of MELO3C025678.2 vs. TrEMBL
Match: tr|A0A1S3CIU3|A0A1S3CIU3_CUCME (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103501325 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 0 

Query: 4   GVSIQQFDMDVTQEYIHWYNNITRLYITRPGAAVGHLRSNNVRLRDVAYDPQQVLDLFNN 63
           G  I+QFDMDVTQEYI+WY NI++LYIT+PGAA+ HLRSNN+RLR+VA DPQQVL++ N+
Sbjct: 104 GPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVADDPQQVLNICND 163

Query: 64  NE 66
           NE
Sbjct: 164 NE 165

[Close]
BLAST of MELO3C025678.2 vs. TrEMBL
Match: tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 0 

Query: 42  SNNVRLRDVAYDPQQVLDLFNNNERYMKEIHNMYDLPIVPPLVHRGRVRVEEDELDEVYH 101
           SNN+ L DVA   Q +LD+ NNNERYM+EIH      IVPP V RG VRVEE ELDE+YH
Sbjct: 18  SNNISLHDVADVQQHILDISNNNERYMEEIHY-----IVPPSVRRGHVRVEEVELDEIYH 77

Query: 102 NVEEMPHTTQT 113
           N++E+    QT
Sbjct: 78  NLKELHPMIQT 83

[Close]
BLAST of MELO3C025678.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 38/68 (55.88%), Postives = 54/68 (79.41%), Query Frame = 0 

Query: 41  RSNNVRLRDVAYDPQQVLDLFNNNERYMKEIHNMYDLPIVPPLVHRGRVRVEE-DELDEV 100
           RS N+RL++VA DPQQVL++ N+NE+YM+ IH MY++ IVP LV R R  V+E ++L+EV
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 101 YHNVEEMP 108
             +VEE+P
Sbjct: 215 VQHVEEVP 222

The following BLAST results are available for this feature:
BLAST of MELO3C025678.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449513.11.3e-3164.55PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_016900498.11.8e-2864.71PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008463092.13.8e-1872.58PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
KGN45851.16.9e-1259.15hypothetical protein Csa_6G014710 [Cucumis sativus][more]
XP_008461670.12.2e-1055.88PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo][more]
BLAST of MELO3C025678.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C025678.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C025678.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME8.8e-3264.55mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME1.2e-2864.71GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A1S3CIU3|A0A1S3CIU3_CUCME2.5e-1872.58serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
tr|A0A0A0KDI9|A0A0A0KDI9_CUCSA4.5e-1259.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014710 PE=4 SV=1[more]
tr|A0A1S3CF98|A0A1S3CF98_CUCME1.5e-1055.88CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025678.2.1MELO3C025678.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025678.2Cucurbita maxima (Rimu)cmamedB509
MELO3C025678.2Cucurbita moschata (Rifu)cmomedB497
MELO3C025678.2Cucurbita pepo (Zucchini)cpemedB631
MELO3C025678.2Bottle gourd (USVL1VR-Ls)lsimedB331
MELO3C025678.2Watermelon (Charleston Gray)medwcgB450
MELO3C025678.2Watermelon (97103) v1medwmB524