MELO3C025672 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025672
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	C2 domain-containing protein / GRAM domain-containing protein
Location	chr7 : 4256578 .. 4257083 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTACTGGTGGGCATGGTGTACCTCTGTTGGGAAGTCCTGATGGTCAGTACCTTTGTATACTTGACAGAAACCTCATTATGTCACAAAATATGAGTTGAAATTACATATTTCAAGCTTGTCAATTTCAAATTTCCTTGATGAAACTGTTGTTTCTAATTTGTAAGCTTCCTAGTGGTGGTTAGATTGTGATCTACGGAAATATTATTAGAAGTACATGAAATGTGTCTTTTCGTTTGTAAATCTTGATTATGCACCTAGATACTTCATTATCTTTCCTCACTTTCTCATTCCATTTTCAGGTAGGGTCAGATATAAATATGCATCATTTTGGAATAGGAACCATGTGGTTAGAGCTTTACAGCACACAGTGAATAACTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGCATGTTCCTTAGACCTTAGGTTTTTCTTTTCGTTGATATTTCTTGTTGTTTTTGTTTTATTTATTTATTTACTTATTTATTATTATTTGTTATAA

mRNA sequence

ATGGGTACTGGTGGGCATGGTGTACCTCTGTTGGGAAGTCCTGATGGTAGGGTCAGATATAAATATGCATCATTTTGGAATAGGAACCATGTGGTTAGAGCTTTACAGCACACAGTGAATAACTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGCATGTTCCTTAGACCTTAGGTTTTTCTTTTCGTTGATATTTCTTGTTGTTTTTGTTTTATTTATTTATTTACTTATTTATTATTATTTGTTATAA

Coding sequence (CDS)

ATGGGTACTGGTGGGCATGGTGTACCTCTGTTGGGAAGTCCTGATGGTAGGGTCAGATATAAATATGCATCATTTTGGAATAGGAACCATGTGGTTAGAGCTTTACAGCACACAGTGAATAACTTCCGTGAAATGCTGGAAGCTGAGAAGAAGGCATGTTCCTTAGACCTTAGGTTTTTCTTTTCGTTGATATTTCTTGTTGTTTTTGTTTTATTTATTTATTTACTTATTTATTATTATTTGTTATAA

Protein sequence

MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKKACSLDLRFFFSLIFLVVFVLFIYLLIYYYLL*

Homology

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BLAST of MELO3C025672 vs. Swiss-Prot
Match: BAGP1_ARATH (BAG-associated GRAM protein 1 OS=Arabidopsis thaliana GN=BAGP1 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-17
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LG+PDGRVRYK+ASFWNRNH ++ALQ  VNN+  MLE EKK
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKK 359

[Close]

BLAST of MELO3C025672 vs. TrEMBL
Match: A0A0A0KTV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011670 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LGSPDGRVRYK+ASFWNRNHVVRALQ +VNNFREMLEAEKK
Sbjct: 318 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKK 368

[Close]

BLAST of MELO3C025672 vs. TrEMBL
Match: G7JNL7_MEDTR (C2 and GRAM domain plant-like protein OS=Medicago truncatula GN=MTR_4g087320 PE=4 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LGSPDGRVRYK+ASFWNRNH VR+LQ  V NFREMLE EKK
Sbjct: 310 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKK 360

[Close]

BLAST of MELO3C025672 vs. TrEMBL
Match: G7JNL8_MEDTR (C2 and GRAM domain plant-like protein OS=Medicago truncatula GN=MTR_4g087320 PE=4 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LGSPDGRVRYK+ASFWNRNH VR+LQ  V NFREMLE EKK
Sbjct: 310 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKK 360

[Close]

BLAST of MELO3C025672 vs. TrEMBL
Match: A0A058ZXE0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00003 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LGSPDGRVRYK+ASFWNRNH +RALQ +++NF  MLEAEKK
Sbjct: 303 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRSLSNFHAMLEAEKK 353

[Close]

BLAST of MELO3C025672 vs. TrEMBL
Match: A0A061EJY3_THECC (C2 domain-containing protein / GRAM domain-containing protein isoform 6 (Fragment) OS=Theobroma cacao GN=TCM_019867 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-15
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LGSPDGRVRYK+ASFWNRNH +RALQ   NN+  MLEAEKK
Sbjct: 177 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRAANNYHAMLEAEKK 227

[Close]

BLAST of MELO3C025672 vs. TAIR10
Match: AT3G59660.1 (AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein)

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-18
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LG+PDGRVRYK+ASFWNRNH ++ALQ  VNN+  MLE EKK
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKK 359

[Close]

BLAST of MELO3C025672 vs. NCBI nr
Match: gi|659127592|ref|XP_008463782.1| (PREDICTED: uncharacterized protein LOC103501844 isoform X2 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
          MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK
Sbjct: 38 MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 88

[Close]

BLAST of MELO3C025672 vs. NCBI nr
Match: gi|659127594|ref|XP_008463783.1| (PREDICTED: uncharacterized protein LOC103501844 isoform X3 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
          MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK
Sbjct: 28 MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 78

[Close]

BLAST of MELO3C025672 vs. NCBI nr
Match: gi|659127590|ref|XP_008463781.1| (PREDICTED: uncharacterized protein LOC103501844 isoform X1 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 8.1e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
          MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK
Sbjct: 49 MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 99

[Close]

BLAST of MELO3C025672 vs. NCBI nr
Match: gi|659130158|ref|XP_008465028.1| (PREDICTED: uncharacterized protein LOC103502745 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 3.8e-19
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LGSPDGRVRYK+ASFWNRNH+VRALQH+VNNFREMLEAEKK
Sbjct: 76  MGVGGHGVPPLGSPDGRVRYKFASFWNRNHMVRALQHSVNNFREMLEAEKK 126

[Close]

BLAST of MELO3C025672 vs. NCBI nr
Match: gi|449468844|ref|XP_004152131.1| (PREDICTED: C2 and GRAM domain-containing protein At1g03370 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1


Query: 1   MGTGGHGVPLLGSPDGRVRYKYASFWNRNHVVRALQHTVNNFREMLEAEKK 52
           MG GGHGVP LGSPDGRVRYK+ASFWNRNHVVRALQ +VNNFREMLEAEKK
Sbjct: 318 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKK 368

The following BLAST results are available for this feature:

BLAST of MELO3C025672 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BAGP1_ARATH	4.6e-17	74.51	BAG-associated GRAM protein 1 OS=Arabidopsis thaliana GN=BAGP1 PE=1 SV=1	[more]

BLAST of MELO3C025672 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTV0_CUCSA	1.0e-18	90.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011670 PE=4 SV=1	[more]
G7JNL7_MEDTR	1.2e-16	82.35	C2 and GRAM domain plant-like protein OS=Medicago truncatula GN=MTR_4g087320 PE=...	[more]
G7JNL8_MEDTR	1.2e-16	82.35	C2 and GRAM domain plant-like protein OS=Medicago truncatula GN=MTR_4g087320 PE=...	[more]
A0A058ZXE0_EUCGR	1.0e-15	78.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L00003 PE=4 SV=1	[more]
A0A061EJY3_THECC	1.0e-15	78.43	C2 domain-containing protein / GRAM domain-containing protein isoform 6 (Fragmen...	[more]

BLAST of MELO3C025672 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59660.1	2.6e-18	74.51	C2 domain-containing protein / GRAM domain-containing protein	[more]

BLAST of MELO3C025672 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127592\|ref\|XP_008463782.1\|	8.1e-22	100.00	PREDICTED: uncharacterized protein LOC103501844 isoform X2 [Cucumis melo]	[more]
gi\|659127594\|ref\|XP_008463783.1\|	8.1e-22	100.00	PREDICTED: uncharacterized protein LOC103501844 isoform X3 [Cucumis melo]	[more]
gi\|659127590\|ref\|XP_008463781.1\|	8.1e-22	100.00	PREDICTED: uncharacterized protein LOC103501844 isoform X1 [Cucumis melo]	[more]
gi\|659130158\|ref\|XP_008465028.1\|	3.8e-19	90.20	PREDICTED: uncharacterized protein LOC103502745 [Cucumis melo]	[more]
gi\|449468844\|ref\|XP_004152131.1\|	1.4e-18	90.20	PREDICTED: C2 and GRAM domain-containing protein At1g03370 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031348	negative regulation of defense response
biological_process	GO:0009617	response to bacterium
biological_process	GO:0009697	salicylic acid biosynthetic process
biological_process	GO:0009627	systemic acquired resistance
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025672T1	MELO3C025672T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 32..52 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025672	Silver-seed gourd	carmeB0317
MELO3C025672	Silver-seed gourd	carmeB0635
MELO3C025672	Cucumber (Chinese Long) v3	cucmeB299
MELO3C025672	Watermelon (97103) v2	mewmbB467
MELO3C025672	Wax gourd	mewgoB603
MELO3C025672	Cucumber (Gy14) v1	cgymeB042
MELO3C025672	Cucurbita maxima (Rimu)	cmameB046
MELO3C025672	Cucurbita maxima (Rimu)	cmameB443
MELO3C025672	Cucurbita moschata (Rifu)	cmomeB035
MELO3C025672	Cucurbita moschata (Rifu)	cmomeB433
MELO3C025672	Wild cucumber (PI 183967)	cpimeB293
MELO3C025672	Cucumber (Chinese Long) v2	cumeB299
MELO3C025672	Watermelon (Charleston Gray)	mewcgB457
MELO3C025672	Watermelon (97103) v1	mewmB539
MELO3C025672	Cucurbita pepo (Zucchini)	cpemeB532
MELO3C025672	Cucurbita pepo (Zucchini)	cpemeB737
MELO3C025672	Bottle gourd (USVL1VR-Ls)	lsimeB315
MELO3C025672	Cucumber (Gy14) v2	cgybmeB254