MELO3C025652.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025652.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	cold and drought-regulated protein CORA-like
Location	chr07 : 4596141 .. 4597448 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAATGTTTAAGCACCAAAAAATAGCCCAAGTTAATTAATTAGCAAAAGCACTTAGCTTTGTTAATTAACCAAAAATGACTTACCCTAAAACCCTTATCGGTCTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCCCAGGTCTCGGCTCGCCTACTCGGTTAGTTTAATTTGCTTATACCAAACTCGCTCTTAAATTTGTTGATAATATATTAAAAAGATTAAATCTGTTTTTATGTATTCATTTTTTTGGTATATGGTTGTAACTTTAGTAGGATGGCTATTGTACAAAATTATGAAAAGAAAAAAATGTTTAATTTGTCACATGCCATTGTATTTAATTTCACGTCGATATTCGGCATTGAAAAGTGTGTAGTTTTCATCAATTTTATATTGTTTTTAAATATATCAAAATATTTATAGATATCATAGTATTATTGTCTATCACAGTTTATTGCTCGGTGATAGGAATTTTTTGTCATTGATAGATAATGACAATTTGATATATTCAAAAATATTTTGATCGATTCTACTATTTTAAAAAATTTATCCTAACATTATATTGATCTTTTTTATAAAAAAAAAAAAAATGCTTTTTTGGAGTGAGCAACAAACATAGGAAAATCTCCTAAACTTTTACTTAACCAAACTTTTAGGTATATGGTAGTGTTTTAACTTAATGTGTTATTTGTACCTCTTCTTTTTCATTCATTTTATATGTAGAGGAAGACAAAGTTAAGGCCGATGGCTTAGATTATCACGGTGGACACTACGGCGGAGGAGGACACTACGGGGGAGGAGGACACTACGGCGGAGGAGGTCACTACGGCGGAGGTGGACACTACGGGGGAGGAGGTCACTACGGTGGAGGACACGGGGGACACTATGGTGGAGGACACTACGGCGGAGGACATGGCCTTGATGCTGACACCAAAAAGTTGAACGATCAAGGTCTAGATAGTCACGGTGGACACCACGGCGGAGGGCACGGTCACGGCGGCGGCCACCACCACTGCCACCATCCCCACTGCCCTGAGAGTGTTAAGAATTAGAACCCTAATACCTACACCCCATCTGCTACCATGTTTGGTTCAAAATAAAAGCATATTATTGTACCATGAAATAAAGTTTGTTTTTATGTGTGTGTTGTGTTTTAAATTTAAATAAAAGCATAAGATATGTTGTATGAAGTGGAGATGATGCTAAATTATCATACTTTGGTAATTTATTACAACCTATGATCTTTCTAGTTTTCATATTATATATGTAATGTCAAACTATATATAAACTTGATTTTGCTTTGTACAT

mRNA sequence

GCAATGTTTAAGCACCAAAAAATAGCCCAAGTTAATTAATTAGCAAAAGCACTTAGCTTTGTTAATTAACCAAAAATGACTTACCCTAAAACCCTTATCGGTCTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCCCAGGTCTCGGCTCGCCTACTCGAGGAAGACAAAGTTAAGGCCGATGGCTTAGATTATCACGGTGGACACTACGGCGGAGGAGGACACTACGGGGGAGGAGGACACTACGGCGGAGGAGGTCACTACGGCGGAGGTGGACACTACGGGGGAGGAGGTCACTACGGTGGAGGACACGGGGGACACTATGGTGGAGGACACTACGGCGGAGGACATGGCCTTGATGCTGACACCAAAAAGTTGAACGATCAAGGTCTAGATAGTCACGGTGGACACCACGGCGGAGGGCACGGTCACGGCGGCGGCCACCACCACTGCCACCATCCCCACTGCCCTGAGAGTGTTAAGAATTAGAACCCTAATACCTACACCCCATCTGCTACCATGTTTGGTTCAAAATAAAAGCATATTATTGTACCATGAAATAAAGTTTGTTTTTATGTGTGTGTTGTGTTTTAAATTTAAATAAAAGCATAAGATATGTTGTATGAAGTGGAGATGATGCTAAATTATCATACTTTGGTAATTTATTACAACCTATGATCTTTCTAGTTTTCATATTATATATGTAATGTCAAACTATATATAAACTTGATTTTGCTTTGTACAT

Coding sequence (CDS)

ATGACTTACCCTAAAACCCTTATCGGTCTCGGTCTCCTCCTCGCTCTTCTTTTCATCTCCTCCCAGGTCTCGGCTCGCCTACTCGAGGAAGACAAAGTTAAGGCCGATGGCTTAGATTATCACGGTGGACACTACGGCGGAGGAGGACACTACGGGGGAGGAGGACACTACGGCGGAGGAGGTCACTACGGCGGAGGTGGACACTACGGGGGAGGAGGTCACTACGGTGGAGGACACGGGGGACACTATGGTGGAGGACACTACGGCGGAGGACATGGCCTTGATGCTGACACCAAAAAGTTGAACGATCAAGGTCTAGATAGTCACGGTGGACACCACGGCGGAGGGCACGGTCACGGCGGCGGCCACCACCACTGCCACCATCCCCACTGCCCTGAGAGTGTTAAGAATTAG

Protein sequence

MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGGGGHYGGGGHYGGGGHYGGGGHYGGGGHYGGGHGGHYGGGHYGGGHGLDADTKKLNDQGLDSHGGHHGGGHGHGGGHHHCHHPHCPESVKN

Homology

[Close]

BLAST of MELO3C025652.2 vs. NCBI nr
Match: XP_008463760.1 (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 1.5e-21
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGXXXXXXXXXXXXXX 60
           MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGXXXXXXXXXXXXXX
Sbjct: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXDADTKKLNDQGLXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXDADTKKLNDQGLXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXDADTKKLNDQGLXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXHCPESVKN 138
           XXXXXXXXXHCPESVKN
Sbjct: 121 XXXXXXXXXHCPESVKN 137

[Close]

BLAST of MELO3C025652.2 vs. NCBI nr
Match: XP_011654035.1 (PREDICTED: ctenidin-3-like [Cucumis sativus] >KGN55051.1 hypothetical protein Csa_4G625060 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYG 47
          MTYPKTLIG GLLLALLFISSQVSARLLEEDKVK+DGLDY GG YG
Sbjct: 1  MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYPGGRYG 46

[Close]

BLAST of MELO3C025652.2 vs. TrEMBL
Match: tr|A0A1S3CJZ6|A0A1S3CJZ6_CUCME (cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC103501826 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGXXXXXXXXXXXXXX 60
           MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGXXXXXXXXXXXXXX
Sbjct: 1   MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYGXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXDADTKKLNDQGLXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXDADTKKLNDQGLXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXHXXXXXXXXXXXXXXXDADTKKLNDQGLXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXHCPESVKN 138
           XXXXXXXXXHCPESVKN
Sbjct: 121 XXXXXXXXXHCPESVKN 137

[Close]

BLAST of MELO3C025652.2 vs. TrEMBL
Match: tr|A0A0A0L4K0|A0A0A0L4K0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625060 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 5.0e-13
Identity = 42/46 (91.30%), Postives = 43/46 (93.48%), Query Frame = 0


Query: 1  MTYPKTLIGLGLLLALLFISSQVSARLLEEDKVKADGLDYHGGHYG 47
          MTYPKTLIG GLLLALLFISSQVSARLLEEDKVK+DGLDY GG YG
Sbjct: 1  MTYPKTLIGFGLLLALLFISSQVSARLLEEDKVKSDGLDYPGGRYG 46

The following BLAST results are available for this feature:

BLAST of MELO3C025652.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463760.1	1.5e-21	100.00	PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo]	[more]
XP_011654035.1	7.6e-13	91.30	PREDICTED: ctenidin-3-like [Cucumis sativus] >KGN55051.1 hypothetical protein Cs...	[more]

BLAST of MELO3C025652.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C025652.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C025652.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJZ6\|A0A1S3CJZ6_CUCME	1.0e-21	100.00	cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
tr\|A0A0A0L4K0\|A0A0A0L4K0_CUCSA	5.0e-13	91.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625060 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010800	GRP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025652.2.1	MELO3C025652.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 5..92 e-value: 1.0E-9 score: 38.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..114

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025652.2	Cucumber (Gy14) v2	cgybmedB252
MELO3C025652.2	Cucumber (Gy14) v1	cgymedB042
MELO3C025652.2	Cucurbita maxima (Rimu)	cmamedB044
MELO3C025652.2	Cucurbita maxima (Rimu)	cmamedB509
MELO3C025652.2	Cucurbita moschata (Rifu)	cmomedB034
MELO3C025652.2	Cucurbita moschata (Rifu)	cmomedB497
MELO3C025652.2	Cucurbita pepo (Zucchini)	cpemedB631
MELO3C025652.2	Cucurbita pepo (Zucchini)	cpemedB870
MELO3C025652.2	Wild cucumber (PI 183967)	cpimedB287
MELO3C025652.2	Cucumber (Chinese Long) v2	cumedB283
MELO3C025652.2	Bottle gourd (USVL1VR-Ls)	lsimedB331
MELO3C025652.2	Watermelon (Charleston Gray)	medwcgB450
MELO3C025652.2	Watermelon (97103) v1	medwmB524
MELO3C025652.2	Silver-seed gourd	carmedB0326
MELO3C025652.2	Silver-seed gourd	carmedB0644
MELO3C025652.2	Cucumber (Chinese Long) v3	cucmedB291
MELO3C025652.2	Watermelon (97103) v2	medwmbB460
MELO3C025652.2	Wax gourd	medwgoB609