MELO3C025604 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025604
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMacrolide export ATP-binding/permease protein MacB 2
Locationchr7 : 5176620 .. 5177039 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACGATATGGAGTTCTCATCCATGTACAGCTAGGGGATTGACATGTCCCAGAAGGATTTACGCGCATCACAACCTTCTCGCGCGTCAGATGGTAGGCCTGGATCGAGCGGCTCTAGAGAAAGAGGAGAAGCTAGCGGGAGGTGAGCTTGAGGTGATACATATGGCCCTAGAGTGTATGAATGACCAACTCAGAACCATTGTCAAGTGGCCTACACGTGCACTTGCTAATGACACCTTTGTTCGCCATGAATTCTTACGCCTATTATTTGAGATGCCTAACCTAAGCAGTTTGGACAGAGCGTTGTGCCAAAGGCAACTCATGTCTCATATGGACGACATGCGCGATTTCGTAGAGATGACTGGCGAAGAGAGGAAGGGCTTTCGTAGAGTCCTCCTACGAGACGTCTCAAGATAG

mRNA sequence

ATGGAAACGATATGGAGTTCTCATCCATGTACAGCTAGGGGATTGACATGTCCCAGAAGGATTTACGCGCATCACAACCTTCTCGCGCGTCAGATGGTAGGCCTGGATCGAGCGGCTCTAGAGAAAGAGGAGAAGCTAGCGGGAGGTGAGCTTGAGGTGATACATATGGCCCTAGAGTGTATGAATGACCAACTCAGAACCATTGTCAAGTGGCCTACACGTGCACTTGCTAATGACACCTTTGTTCGCCATGAATTCTTACGCCTATTATTTGAGATGCCTAACCTAAGCAGTTTGGACAGAGCGTTGTGCCAAAGGCAACTCATGTCTCATATGGACGACATGCGCGATTTCGTAGAGATGACTGGCGAAGAGAGGAAGGGCTTTCGTAGAGTCCTCCTACGAGACGTCTCAAGATAG

Coding sequence (CDS)

ATGGAAACGATATGGAGTTCTCATCCATGTACAGCTAGGGGATTGACATGTCCCAGAAGGATTTACGCGCATCACAACCTTCTCGCGCGTCAGATGGTAGGCCTGGATCGAGCGGCTCTAGAGAAAGAGGAGAAGCTAGCGGGAGGTGAGCTTGAGGTGATACATATGGCCCTAGAGTGTATGAATGACCAACTCAGAACCATTGTCAAGTGGCCTACACGTGCACTTGCTAATGACACCTTTGTTCGCCATGAATTCTTACGCCTATTATTTGAGATGCCTAACCTAAGCAGTTTGGACAGAGCGTTGTGCCAAAGGCAACTCATGTCTCATATGGACGACATGCGCGATTTCGTAGAGATGACTGGCGAAGAGAGGAAGGGCTTTCGTAGAGTCCTCCTACGAGACGTCTCAAGATAG

Protein sequence

METIWSSHPCTARGLTCPRRIYAHHNLLARQMVGLDRAALEKEEKLAGGELEVIHMALECMNDQLRTIVKWPTRALANDTFVRHEFLRLLFEMPNLSSLDRALCQRQLMSHMDDMRDFVEMTGEERKGFRRVLLRDVSR*
Homology
[Close]
BLAST of MELO3C025604 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 7.3e-22
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 50  ELEVIHMALECMNDQLRTIVKWPTRALANDTFVRHEFLRLLFEMPNLSSLDRALCQRQLM 109
           ++E IH+AL+  N+QLR I +WP R LAND  VR EF R+L EMP L+SLDRAL QR L+
Sbjct: 534 DVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLL 593

Query: 110 SHMDDMRDFVEMTGEERKGFRRVLLRDVSR 140
           S MDD+R FV M  +ER+GF RVLLRD+ R
Sbjct: 594 SRMDDLRGFVLMPEDEREGFCRVLLRDIER 623

[Close]
BLAST of MELO3C025604 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-27
Identity = 64/91 (70.33%), Postives = 75/91 (82.42%), Query Frame = 1 

Query: 49  GELEVIHMALECMNDQLRTIVKWPTRALANDTFVRHEFLRLLFEMPNLSSLDRALCQRQL 108
           GE++VIHMAL+CMNDQL+ IV+W  RALAN+T V  EF+RLL EM  LS+LDRALCQR L
Sbjct: 267 GEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHL 326

Query: 109 MSHMDDMRDFVEMTGEERKGFRRVLLRDVSR 140
           MSHMDDM  FV+MT +ER+ F RVLLRD SR
Sbjct: 327 MSHMDDMWGFVQMTNDERQNFCRVLLRDFSR 357

[Close]
BLAST of MELO3C025604 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 

Query: 50  ELEVIHMALECMNDQLRTIVKWPTRALANDTFVRHEFLRLLFEMPNLSSLDRALCQRQLM 109
           ++E IH+AL+  N+QLR I +WP R LAND  VR EF R+L EMP L+SLDRAL QR L+
Sbjct: 534 DVEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLL 593

Query: 110 SHMDDMRDFVEMTGEERKGFRRVLLRDVSR 140
           S MDD+R FV M  +ER+GF RVLLRD+ R
Sbjct: 594 SRMDDLRGFVLMPEDEREGFCRVLLRDIER 623

The following BLAST results are available for this feature:
BLAST of MELO3C025604 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME7.3e-2261.11Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C025604 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659093712|ref|XP_008447677.1|2.9e-2770.33PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|1.0e-2161.11retrotransposon protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025604T1MELO3C025604T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025604Cucumber (Chinese Long) v3cucmeB299
MELO3C025604Watermelon (97103) v2mewmbB467
MELO3C025604Wax gourdmewgoB603
MELO3C025604Melon (DHL92) v3.5.1memeB153
MELO3C025604Cucumber (Gy14) v1cgymeB188
MELO3C025604Cucurbita maxima (Rimu)cmameB038
MELO3C025604Cucurbita maxima (Rimu)cmameB443
MELO3C025604Cucurbita moschata (Rifu)cmomeB027
MELO3C025604Cucurbita moschata (Rifu)cmomeB433
MELO3C025604Wild cucumber (PI 183967)cpimeB293
MELO3C025604Cucumber (Chinese Long) v2cumeB299
MELO3C025604Watermelon (Charleston Gray)mewcgB457
MELO3C025604Watermelon (Charleston Gray)mewcgB500
MELO3C025604Watermelon (97103) v1mewmB522
MELO3C025604Watermelon (97103) v1mewmB539
MELO3C025604Cucurbita pepo (Zucchini)cpemeB532
MELO3C025604Cucurbita pepo (Zucchini)cpemeB732
MELO3C025604Bottle gourd (USVL1VR-Ls)lsimeB315
MELO3C025604Cucumber (Gy14) v2cgybmeB254
MELO3C025604Silver-seed gourdcarmeB0173
MELO3C025604Silver-seed gourdcarmeB0317