MELO3C025574.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C025574.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionflocculation protein FLO11-like
Locationchr12 : 13154249 .. 13154866 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGATCTAGGGTGTTAGTTAAGACAGTGATTTTAGATTCTGATTCCTCCAATGGTACTGATAATGTTGTTCTGTCAACACTCTTTCATCGAAAAATTGGGCTTCAAATTGATCCGCCATCTACTTCTCCTCACTCGACTCAGGTTCGGCACTCTCCCTCTCGATCGGCATCACCTCCTAAGGATGTTTCCTCTTAACCTACGGACCATGGTAAGTCTCCTGCTGCTTCAACGCTTCCAGCTTCTCCACAAACTTCTCTTCCAACTGATGAGGAGGATGCGAGTGATGACACTGACGAAGATTACGTTCTTATACTTGAGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACGGAGGATCCTGTGTCCTTCCCTAAAATTCAAACATCCGAACCCCAGTCGACTGAAGGACCTGGTGATTCCTCCATTTCAATGTTGCTGCCCGGGCATGTTGGTTCCTCTTACGAACCCCATCGTCTACCTGTCAAGGGTCAACGCATAATCTTCACCAAGGCTGGTCATTGGAAGATATCTCTCAATGTACCCTCTATACCGATAAATTGTGTGTCGTTTCATTCTGAGGAAGGAGCACACAAATGGAAATATGTTTAA

mRNA sequence

ATGTCGGGATCTAGGGTGTTAGTTAAGACAGTGATTTTAGATTCTGATTCCTCCAATGGTACTGATAATGTTGTTCTGTCAACACTCTTTCATCGAAAAATTGGGCTTCAAATTGATCCGCCATCTACTTCTCCTCACTCGACTCAGTCTCCTGCTGCTTCAACGCTTCCAGCTTCTCCACAAACTTCTCTTCCAACTGATGAGGAGGATGCGAGTGATGACACTGACGAAGATTACGTTCTTATACTTGAGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACGGAGGATCCTGTGTCCTTCCCTAAAATTCAAACATCCGAACCCCAGTCGACTGAAGGACCTGGTGATTCCTCCATTTCAATGTTGCTGCCCGGGCATGTTGGTTCCTCTTACGAACCCCATCGTCTACCTGTCAAGGGTCAACGCATAATCTTCACCAAGGCTGGTCATTGGAAGATATCTCTCAATGTACCCTCTATACCGATAAATTGTGTGTCGTTTCATTCTGAGGAAGGAGCACACAAATGGAAATATGTTTAA

Coding sequence (CDS)

ATGTCGGGATCTAGGGTGTTAGTTAAGACAGTGATTTTAGATTCTGATTCCTCCAATGGTACTGATAATGTTGTTCTGTCAACACTCTTTCATCGAAAAATTGGGCTTCAAATTGATCCGCCATCTACTTCTCCTCACTCGACTCAGTCTCCTGCTGCTTCAACGCTTCCAGCTTCTCCACAAACTTCTCTTCCAACTGATGAGGAGGATGCGAGTGATGACACTGACGAAGATTACGTTCTTATACTTGAGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACGGAGGATCCTGTGTCCTTCCCTAAAATTCAAACATCCGAACCCCAGTCGACTGAAGGACCTGGTGATTCCTCCATTTCAATGTTGCTGCCCGGGCATGTTGGTTCCTCTTACGAACCCCATCGTCTACCTGTCAAGGGTCAACGCATAATCTTCACCAAGGCTGGTCATTGGAAGATATCTCTCAATGTACCCTCTATACCGATAAATTGTGTGTCGTTTCATTCTGAGGAAGGAGCACACAAATGGAAATATGTTTAA

Protein sequence

MSGSRVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSLPTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV
Homology
[Close]
BLAST of MELO3C025574.2 vs. NCBI nr
Match: XP_008441642.1 (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 2.8e-39
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 0 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSL 64
           RV ++TV+LDSDSS+  DNVVLSTL HRK                S A S+  A PQ SL
Sbjct: 251 RVSIETVVLDSDSSDSKDNVVLSTLLHRK---------------SSAAPSSPHAFPQASL 310

Query: 65  PTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISML 124
           PT+E+DASD+TDEDYV   E+   LE+++TSTEDP +    +T EP+STEG  + SI M 
Sbjct: 311 PTNEDDASDETDEDYVPGTEETTVLEDSSTSTEDPSASHDARTLEPRSTEGSSEFSIPMS 370

Query: 125 LPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
            PG+V SSY   R PV+GQR+  TKAG  KI  NVPS+PI+ VSF SEEGAHKWKY+
Sbjct: 371 PPGNVDSSYSLRRPPVRGQRVFSTKAGRRKIPPNVPSVPIDGVSFRSEEGAHKWKYM 412

[Close]
BLAST of MELO3C025574.2 vs. NCBI nr
Match: XP_008464024.1 (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 3.7e-39
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 0 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSL 64
           RV V+TV+LD DSS+G DN               D PS +    +S A  + PASPQ SL
Sbjct: 41  RVSVETVVLDFDSSDGIDN---------------DVPSRTTDHGKSSATPSFPASPQVSL 100

Query: 65  PTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISML 124
           PTD+++ASDD DEDYV + ++  ALEET TSTED VS P  +T EPQST+ PG+SSISM 
Sbjct: 101 PTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNRTPEPQSTKAPGESSISMS 160

Query: 125 LPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
              HVGSS  PHR  V+GQR++ TK G+ KI  N+P + I+ VSFHSEEGAHKWKYV
Sbjct: 161 PLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDGVSFHSEEGAHKWKYV 202

[Close]
BLAST of MELO3C025574.2 vs. NCBI nr
Match: XP_008452349.1 (PREDICTED: uncharacterized protein LOC103493408 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0 

Query: 78  DYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISMLLPGHVGSSYEPHR 137
           DYV   E+ L  EETT ST+D VS  +  TS+PQSTEGP DSSISM  P HV SS  P  
Sbjct: 11  DYVSANEETLVPEETTMSTKDYVSSLENHTSKPQSTEGPSDSSISMSPPRHVDSSSRPRH 70

Query: 138 LPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
            PV+GQR+I TK G  KI LNVP +PI+ VSFHSEEGAH+WKYV
Sbjct: 71  SPVRGQRVISTKVGRRKIPLNVPHMPIDGVSFHSEEGAHRWKYV 114

[Close]
BLAST of MELO3C025574.2 vs. NCBI nr
Match: XP_008457140.1 (PREDICTED: flocculation protein FLO11-like [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-14
Identity = 71/209 (33.97%), Postives = 90/209 (43.06%), Query Frame = 0 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRK-------------------IGLQIDPPSTSP 64
           RV V+TV+LD +SS+  DNV+LSTL HR                    +  ++ PP  S 
Sbjct: 120 RVSVETVVLDFNSSDSDDNVILSTLLHRTRSTRSNQTTSLIKPQASGGVSPKVAPPRPSE 179

Query: 65  HSTQSPAASTLPASPQTSLPTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKI 124
           H+  S   S+  ASP+T  P +                                      
Sbjct: 180 HTKYSGTPSS-QASPKTVPPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239

Query: 125 QTSE-------------PQSTEGPGDSSISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGH 182
                            P+STEGP + S  +  P HV SS      P KGQR++ TK G 
Sbjct: 240 XXXXXXXXXXXXXXXXIPRSTEGPSEFSTLVSTPAHVASSSSFRGPPTKGQRVVSTKDGR 299

[Close]
BLAST of MELO3C025574.2 vs. NCBI nr
Match: XP_008462125.1 (PREDICTED: uncharacterized protein LOC103500554 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-09
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 0 

Query: 108 SEPQSTEGPGDS------------SISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGHWKI 167
           S+ +S E PG+S                    H+ SS    R P KGQ+++ TKAG  K+
Sbjct: 362 SDHRSNEEPGESXXXXXXXXXXXXXXXXXXXAHMASSSGFRRPPTKGQQVVSTKAGRRKV 421

Query: 168 SLNVPSIPINCVSFHSEEGAHKWKYV 182
             NV S+PI+ VSFHS+EGAHKWKYV
Sbjct: 422 PPNVSSLPIDGVSFHSKEGAHKWKYV 447

[Close]
BLAST of MELO3C025574.2 vs. TrEMBL
Match: tr|A0A1S3B3W2|A0A1S3B3W2_CUCME (uncharacterized protein LOC103485722 OS=Cucumis melo OX=3656 GN=LOC103485722 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 0 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSL 64
           RV ++TV+LDSDSS+  DNVVLSTL HRK                S A S+  A PQ SL
Sbjct: 251 RVSIETVVLDSDSSDSKDNVVLSTLLHRK---------------SSAAPSSPHAFPQASL 310

Query: 65  PTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISML 124
           PT+E+DASD+TDEDYV   E+   LE+++TSTEDP +    +T EP+STEG  + SI M 
Sbjct: 311 PTNEDDASDETDEDYVPGTEETTVLEDSSTSTEDPSASHDARTLEPRSTEGSSEFSIPMS 370

Query: 125 LPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
            PG+V SSY   R PV+GQR+  TKAG  KI  NVPS+PI+ VSF SEEGAHKWKY+
Sbjct: 371 PPGNVDSSYSLRRPPVRGQRVFSTKAGRRKIPPNVPSVPIDGVSFRSEEGAHKWKYM 412

[Close]
BLAST of MELO3C025574.2 vs. TrEMBL
Match: tr|A0A1S3CL10|A0A1S3CL10_CUCME (uncharacterized protein LOC103502008 OS=Cucumis melo OX=3656 GN=LOC103502008 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 0 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSL 64
           RV V+TV+LD DSS+G DN               D PS +    +S A  + PASPQ SL
Sbjct: 41  RVSVETVVLDFDSSDGIDN---------------DVPSRTTDHGKSSATPSFPASPQVSL 100

Query: 65  PTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISML 124
           PTD+++ASDD DEDYV + ++  ALEET TSTED VS P  +T EPQST+ PG+SSISM 
Sbjct: 101 PTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNRTPEPQSTKAPGESSISMS 160

Query: 125 LPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
              HVGSS  PHR  V+GQR++ TK G+ KI  N+P + I+ VSFHSEEGAHKWKYV
Sbjct: 161 PLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDGVSFHSEEGAHKWKYV 202

[Close]
BLAST of MELO3C025574.2 vs. TrEMBL
Match: tr|A0A1S3BUF5|A0A1S3BUF5_CUCME (uncharacterized protein LOC103493408 OS=Cucumis melo OX=3656 GN=LOC103493408 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.9e-26
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0 

Query: 78  DYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISMLLPGHVGSSYEPHR 137
           DYV   E+ L  EETT ST+D VS  +  TS+PQSTEGP DSSISM  P HV SS  P  
Sbjct: 11  DYVSANEETLVPEETTMSTKDYVSSLENHTSKPQSTEGPSDSSISMSPPRHVDSSSRPRH 70

Query: 138 LPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
            PV+GQR+I TK G  KI LNVP +PI+ VSFHSEEGAH+WKYV
Sbjct: 71  SPVRGQRVISTKVGRRKIPLNVPHMPIDGVSFHSEEGAHRWKYV 114

[Close]
BLAST of MELO3C025574.2 vs. TrEMBL
Match: tr|A0A1S3C4X0|A0A1S3C4X0_CUCME (flocculation protein FLO11-like OS=Cucumis melo OX=3656 GN=LOC103496886 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 71/209 (33.97%), Postives = 90/209 (43.06%), Query Frame = 0 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRK-------------------IGLQIDPPSTSP 64
           RV V+TV+LD +SS+  DNV+LSTL HR                    +  ++ PP  S 
Sbjct: 120 RVSVETVVLDFNSSDSDDNVILSTLLHRTRSTRSNQTTSLIKPQASGGVSPKVAPPRPSE 179

Query: 65  HSTQSPAASTLPASPQTSLPTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKI 124
           H+  S   S+  ASP+T  P +                                      
Sbjct: 180 HTKYSGTPSS-QASPKTVPPGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 239

Query: 125 QTSE-------------PQSTEGPGDSSISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGH 182
                            P+STEGP + S  +  P HV SS      P KGQR++ TK G 
Sbjct: 240 XXXXXXXXXXXXXXXXIPRSTEGPSEFSTLVSTPAHVASSSSFRGPPTKGQRVVSTKDGR 299

[Close]
BLAST of MELO3C025574.2 vs. TrEMBL
Match: tr|A0A1S3CHP9|A0A1S3CHP9_CUCME (uncharacterized protein LOC103500554 OS=Cucumis melo OX=3656 GN=LOC103500554 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.4e-09
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 0 

Query: 108 SEPQSTEGPGDS------------SISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGHWKI 167
           S+ +S E PG+S                    H+ SS    R P KGQ+++ TKAG  K+
Sbjct: 362 SDHRSNEEPGESXXXXXXXXXXXXXXXXXXXAHMASSSGFRRPPTKGQQVVSTKAGRRKV 421

Query: 168 SLNVPSIPINCVSFHSEEGAHKWKYV 182
             NV S+PI+ VSFHS+EGAHKWKYV
Sbjct: 422 PPNVSSLPIDGVSFHSKEGAHKWKYV 447

The following BLAST results are available for this feature:
BLAST of MELO3C025574.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441642.12.8e-3955.37PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
XP_008464024.13.7e-3955.37PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
XP_008452349.11.0e-2563.46PREDICTED: uncharacterized protein LOC103493408 [Cucumis melo][more]
XP_008457140.12.4e-1433.97PREDICTED: flocculation protein FLO11-like [Cucumis melo][more]
XP_008462125.15.2e-0944.19PREDICTED: uncharacterized protein LOC103500554 [Cucumis melo][more]
BLAST of MELO3C025574.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C025574.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C025574.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B3W2|A0A1S3B3W2_CUCME1.9e-3955.37uncharacterized protein LOC103485722 OS=Cucumis melo OX=3656 GN=LOC103485722 PE=... [more]
tr|A0A1S3CL10|A0A1S3CL10_CUCME2.4e-3955.37uncharacterized protein LOC103502008 OS=Cucumis melo OX=3656 GN=LOC103502008 PE=... [more]
tr|A0A1S3BUF5|A0A1S3BUF5_CUCME6.9e-2663.46uncharacterized protein LOC103493408 OS=Cucumis melo OX=3656 GN=LOC103493408 PE=... [more]
tr|A0A1S3C4X0|A0A1S3C4X0_CUCME1.6e-1433.97flocculation protein FLO11-like OS=Cucumis melo OX=3656 GN=LOC103496886 PE=4 SV=... [more]
tr|A0A1S3CHP9|A0A1S3CHP9_CUCME3.4e-0944.19uncharacterized protein LOC103500554 OS=Cucumis melo OX=3656 GN=LOC103500554 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025574.2.1MELO3C025574.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..66
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..119

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025574.2Cucumber (Gy14) v2cgybmedB009
MELO3C025574.2Cucurbita maxima (Rimu)cmamedB216
MELO3C025574.2Cucumber (Gy14) v1cgymedB528
MELO3C025574.2Cucurbita maxima (Rimu)cmamedB414
MELO3C025574.2Cucurbita pepo (Zucchini)cpemedB033
MELO3C025574.2Wild cucumber (PI 183967)cpimedB011
MELO3C025574.2Cucumber (Chinese Long) v2cumedB010
MELO3C025574.2Melon (DHL92) v3.6.1medmedB071
MELO3C025574.2Bottle gourd (USVL1VR-Ls)lsimedB192