MELO3C025574 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025574
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionAspartate--tRNA(Asp/Asn) ligase
Locationchr12 : 13790587 .. 13791204 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGATCTAGGGTGTTAGTTAAGACAGTGATTTTAGATTCTGATTCCTCCAATGGTACTGATAATGTTGTTCTGTCAACACTCTTTCATCGAAAAATTGGGCTTCAAATTGATCCGCCATCTACTTCTCCTCACTCGACTCAGGTTCGGCACTCTCCCTCTCGATCGGCATCACCTCCTAAGGATGTTTCCTCTTAACCTACGGACCATGGTAAGTCTCCTGCTGCTTCAACGCTTCCAGCTTCTCCACAAACTTCTCTTCCAACTGATGAGGAGGATGCGAGTGATGACACTGACGAAGATTACGTTCTTATACTTGAGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACGGAGGATCCTGTGTCCTTCCCTAAAATTCAAACATCCGAACCCCAGTCGACTGAAGGACCTGGTGATTCCTCCATTTCAATGTTGCTGCCCGGGCATGTTGGTTCCTCTTACGAACCCCATCGTCTACCTGTCAAGGGTCAACGCATAATCTTCACCAAGGCTGGTCATTGGAAGATATCTCTCAATGTACCCTCTATACCGATAAATTGTGTGTCGTTTCATTCTGAGGAAGGAGCACACAAATGGAAATATGTTTAA

mRNA sequence

ATGTCGGGATCTAGGGTGTTAGTTAAGACAGTGATTTTAGATTCTGATTCCTCCAATGGTACTGATAATGTTGTTCTGTCAACACTCTTTCATCGAAAAATTGGGCTTCAAATTGATCCGCCATCTACTTCTCCTCACTCGACTCAGTCTCCTGCTGCTTCAACGCTTCCAGCTTCTCCACAAACTTCTCTTCCAACTGATGAGGAGGATGCGAGTGATGACACTGACGAAGATTACGTTCTTATACTTGAGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACGGAGGATCCTGTGTCCTTCCCTAAAATTCAAACATCCGAACCCCAGTCGACTGAAGGACCTGGTGATTCCTCCATTTCAATGTTGCTGCCCGGGCATGTTGGTTCCTCTTACGAACCCCATCGTCTACCTGTCAAGGGTCAACGCATAATCTTCACCAAGGCTGGTCATTGGAAGATATCTCTCAATGTACCCTCTATACCGATAAATTGTGTGTCGTTTCATTCTGAGGAAGGAGCACACAAATGGAAATATGTTTAA

Coding sequence (CDS)

ATGTCGGGATCTAGGGTGTTAGTTAAGACAGTGATTTTAGATTCTGATTCCTCCAATGGTACTGATAATGTTGTTCTGTCAACACTCTTTCATCGAAAAATTGGGCTTCAAATTGATCCGCCATCTACTTCTCCTCACTCGACTCAGTCTCCTGCTGCTTCAACGCTTCCAGCTTCTCCACAAACTTCTCTTCCAACTGATGAGGAGGATGCGAGTGATGACACTGACGAAGATTACGTTCTTATACTTGAGGACCCTCTTGCACTAGAGGAAACCACGACTTCTACGGAGGATCCTGTGTCCTTCCCTAAAATTCAAACATCCGAACCCCAGTCGACTGAAGGACCTGGTGATTCCTCCATTTCAATGTTGCTGCCCGGGCATGTTGGTTCCTCTTACGAACCCCATCGTCTACCTGTCAAGGGTCAACGCATAATCTTCACCAAGGCTGGTCATTGGAAGATATCTCTCAATGTACCCTCTATACCGATAAATTGTGTGTCGTTTCATTCTGAGGAAGGAGCACACAAATGGAAATATGTTTAA

Protein sequence

MSGSRVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSLPTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV*
Homology
[Close]
BLAST of MELO3C025574 vs. NCBI nr
Match: gi|659128057|ref|XP_008464024.1| (PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 2.4e-42
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 1 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSL 64
           RV V+TV+LD DSS+G DN               D PS +    +S A  + PASPQ SL
Sbjct: 41  RVSVETVVLDFDSSDGIDN---------------DVPSRTTDHGKSSATPSFPASPQVSL 100

Query: 65  PTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISML 124
           PTD+++ASDD DEDYV + ++  ALEET TSTED VS P  +T EPQST+ PG+SSISM 
Sbjct: 101 PTDDDEASDDIDEDYVPVTKETHALEETMTSTEDLVSSPDNRTPEPQSTKAPGESSISMS 160

Query: 125 LPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
              HVGSS  PHR  V+GQR++ TK G+ KI  N+P + I+ VSFHSEEGAHKWKYV
Sbjct: 161 PLVHVGSSSRPHRQLVRGQRVVSTKTGNRKIPSNIPFMSIDGVSFHSEEGAHKWKYV 202

[Close]
BLAST of MELO3C025574 vs. NCBI nr
Match: gi|659082052|ref|XP_008441642.1| (PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo])

HSP 1 Score: 178.7 bits (452), Expect = 9.1e-42
Identity = 98/177 (55.37%), Postives = 120/177 (67.80%), Query Frame = 1 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSL 64
           RV ++TV+LDSDSS+  DNVVLSTL HRK                S A S+  A PQ SL
Sbjct: 251 RVSIETVVLDSDSSDSKDNVVLSTLLHRK---------------SSAAPSSPHAFPQASL 310

Query: 65  PTDEEDASDDTDEDYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISML 124
           PT+E+DASD+TDEDYV   E+   LE+++TSTEDP +    +T EP+STEG  + SI M 
Sbjct: 311 PTNEDDASDETDEDYVPGTEETTVLEDSSTSTEDPSASHDARTLEPRSTEGSSEFSIPMS 370

Query: 125 LPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
            PG+V SSY   R PV+GQR+  TKAG  KI  NVPS+PI+ VSF SEEGAHKWKY+
Sbjct: 371 PPGNVDSSYSLRRPPVRGQRVFSTKAGRRKIPPNVPSVPIDGVSFRSEEGAHKWKYM 412

[Close]
BLAST of MELO3C025574 vs. NCBI nr
Match: gi|659114605|ref|XP_008457140.1| (PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 4.7e-30
Identity = 88/209 (42.11%), Postives = 114/209 (54.55%), Query Frame = 1 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRK-------------------IGLQIDPPSTSP 64
           RV V+TV+LD +SS+  DNV+LSTL HR                    +  ++ PP  S 
Sbjct: 120 RVSVETVVLDFNSSDSDDNVILSTLLHRTRSTRSNQTTSLIKPQASGGVSPKVAPPRPSE 179

Query: 65  HSTQSPAASTLPASPQTSLPTDEEDASDDTD-EDYVLILEDPLALEETTTSTEDPVSFPK 124
           H+  S   S+  ASP+T  P + +D  DD+D EDY    E+    E T+TSTE+  + PK
Sbjct: 180 HTKYSGTPSS-QASPKTVPPGEADDEDDDSDDEDYAPGTEEKTKAETTSTSTENQSASPK 239

Query: 125 IQTSE------------PQSTEGPGDSSISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGH 182
              S+            P+STEGP + S  +  P HV SS      P KGQR++ TK G 
Sbjct: 240 KDPSDHRSTEESGESSIPRSTEGPSEFSTLVSTPAHVASSSSFRGPPTKGQRVVSTKDGR 299

[Close]
BLAST of MELO3C025574 vs. NCBI nr
Match: gi|659082066|ref|XP_008441650.1| (PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 6.3e-27
Identity = 82/190 (43.16%), Postives = 107/190 (56.32%), Query Frame = 1 

Query: 5   RVLVKTVILDSDSSNGTDNVVLSTLFHRKIGLQIDPPSTSPHSTQSPAASTLPASPQTSL 64
           RV V+TV+LDSDSS   DNV+LSTL                  T+  A     ASP+T+ 
Sbjct: 73  RVSVETVVLDSDSSESDDNVILSTLV-----------------TEQEAH----ASPKTAP 132

Query: 65  PTDEEDASDDTD-EDYVLILEDPLALEETTTSTEDPVSFPKI------------QTSEPQ 124
           P + +D  DD+D EDY    ++    E T+TSTE+  + P+             ++S P+
Sbjct: 133 PCEADDDDDDSDDEDYAPGTKEKTEAEATSTSTENQSASPEKDPYDHRSTEEPGESSIPR 192

Query: 125 STEGPGDSSISMLLPGHVGSSYEPHRLPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHS 182
           STEGP +SS  +    HV SS    R P KGQR++ TK G  K+  NVPS+PI+ VSFHS
Sbjct: 193 STEGPSESSTPVSTLAHVASSSGFRRPPTKGQRVVSTKTGRQKVPPNVPSVPIDGVSFHS 241

[Close]
BLAST of MELO3C025574 vs. NCBI nr
Match: gi|659102855|ref|XP_008452349.1| (PREDICTED: uncharacterized protein LOC103493408 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 4.1e-26
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 1 

Query: 78  DYVLILEDPLALEETTTSTEDPVSFPKIQTSEPQSTEGPGDSSISMLLPGHVGSSYEPHR 137
           DYV   E+ L  EETT ST+D VS  +  TS+PQSTEGP DSSISM  P HV SS  P  
Sbjct: 11  DYVSANEETLVPEETTMSTKDYVSSLENHTSKPQSTEGPSDSSISMSPPRHVDSSSRPRH 70

Query: 138 LPVKGQRIIFTKAGHWKISLNVPSIPINCVSFHSEEGAHKWKYV 182
            PV+GQR+I TK G  KI LNVP +PI+ VSFHSEEGAH+WKYV
Sbjct: 71  SPVRGQRVISTKVGRRKIPLNVPHMPIDGVSFHSEEGAHRWKYV 114

The following BLAST results are available for this feature:
BLAST of MELO3C025574 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128057|ref|XP_008464024.1|2.4e-4255.37PREDICTED: uncharacterized protein LOC103502008 [Cucumis melo][more]
gi|659082052|ref|XP_008441642.1|9.1e-4255.37PREDICTED: uncharacterized protein LOC103485722 [Cucumis melo][more]
gi|659114605|ref|XP_008457140.1|4.7e-3042.11PREDICTED: uncharacterized protein LOC103496886 [Cucumis melo][more]
gi|659082066|ref|XP_008441650.1|6.3e-2743.16PREDICTED: uncharacterized protein LOC103485731 [Cucumis melo][more]
gi|659102855|ref|XP_008452349.1|4.1e-2663.46PREDICTED: uncharacterized protein LOC103493408 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025574T1MELO3C025574T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025574Cucumber (Gy14) v1cgymeB526
MELO3C025574Wild cucumber (PI 183967)cpimeB030
MELO3C025574Cucumber (Chinese Long) v2cumeB015
MELO3C025574Cucumber (Gy14) v2cgybmeB028