MELO3C025569 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025569
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSister chromatid cohesion PDS5 B
Locationchr12 : 13748448 .. 13750146 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCATAAGCTTCAGCAACAGCTCAAGGAGGTGGGATCCAAGCTCCAGACTCCACCTGCCACTAAAGATGCTCTCATTAAACTCTTGAAGGTACCCATTTCCTCTAATTCTGCTTCTCTTTCTGTTTCTCTTTCTGTTTCTCTTTCAAACCTCCTAACTTCAATTACTCGACTTTTCTTTTCTTCTTAGCTTTTGAGCCAAATTCACGTTTTTTCTTCCTCTGTTTCGATGAGGATAAAGAGCTGAGGTGGAATTTGTTTTTTCAATTTGGGGTTTTGGGTTTTGTTTTGTGGAATTTGGATGTGTTGCTTCCAGTAATTGAAGCCTTAAATCTTGTTTCTCCTCATGAGGCGTTTGTTTTGTTTGTTTTAAGAGTGAGCATTTTCGACTTCTGGGTTTTAATTTTTGTACTGGATTGTAATGGGGAATTCTTGAGAAGTCTGCTCTGTAGTCAAAATTCTTCACTGTCGTGTCTTCATTTCTGGGAATTGGGCTAGATTATGCTAGATAAGTGCTCTTGATTGATTTTTCTCAAAGATTTTTCTTTCTTCGCCATCTCTTTCTACAATTAGCGACTATCGTCCAATTAGTTTCTCATTGAGCTCTTGAAGTTTCGATTCAGTAGGATCTAGGTTTTTCAACTGAAAATGTGTCCGATTGTATGGGGATGTAATGCATGCATGTTTCCGGTGAGTCGCTCGTCTTCAAAATTCTTATGAATCGTCCAACTATTGTATACTCTTAAGTCAAAACTACTCAACTCAATTGACACTTGACGGAAATTTTATGCTAATTCGCATTGGGTTTGACTATTCTCTCCTCTATTATCTCGAATTAATTTATCTCACTTTGTCATATTTTGAGGCAATAACAACCCATTCTTTTGATGAACCCACCATACTAAATTTTGTTGTTGAGGAAGATGGGGCTGTTAGGTCAGTTTCCGGAAGAAGTATGCACGTTATGTTCATAATTATGTCTCATTCAAGCATTTACCCTCTTTCGCTCCAGATTTTCAACTGTCCATATATTAGTAGTTTACTTCTACTCTCTACCGTTAGTTGCCAAGACCAGCAGTTTATTGTGTCCTTACTCGGGAACCTAGGGATTGAAGAATATGAAACATAGTTATTACTTACATTGACTATTTCTAAGCCTGCTATATGATTTATGTGTCTCATACTTTGCTGTATTTCAATTTGCAGCAAGCTGTCGGATACCTTTCTGAGTTGGATCAGTCGCCGTCAGCTTCAATTTTGGAGTCAATGCAACCTTTTATCGATGCAATTATCAAACCGGAATTACTTCAACACCAAGATAGAGATGTGAAACTTCTAGTTGCAACGTGTATTTGTGAAATAACACGAATAACAGCCCCTGAAGCTCCTTATACGGATGATGTTTTAAAGGTAATACTTGTCAATGGAACTGGATTGTGTAATTATTAAATCTGATTTGTTAGGTATACTATGCGGTGGTTTGACTTTAGCCCATCTTCCTGCAGGATATCTTTCACTTGATAGTGGGCACTTTTAGTGGATTAAATGATACTACTGGTCCTTCATTTGGTAGGAGAGTTGTCATTTTGGAGACACTTGCTAAATATAGGTCGTGTGTTGTAATGTTGGACCTTGATTGTGATGATCTGGTCAATGAAATGTTTGGCACCTTTCTTGCCGTTGCGAGGTTAGTTTAA

mRNA sequence

ATGGCTCATAAGCTTCAGCAACAGCTCAAGGAGGTGGGATCCAAGCTCCAGACTCCACCTGCCACTAAAGATGCTCTCATTAAACTCTTGAAGCAAGCTGTCGGATACCTTTCTGAGTTGGATCAGTCGCCGTCAGCTTCAATTTTGGAGTCAATGCAACCTTTTATCGATGCAATTATCAAACCGGAATTACTTCAACACCAAGATAGAGATGTGAAACTTCTAGTTGCAACGTGTATTTGTGAAATAACACGAATAACAGCCCCTGAAGCTCCTTATACGGATGATGTTTTAAAGGATATCTTTCACTTGATAGTGGGCACTTTTAGTGGATTAAATGATACTACTGGTCCTTCATTTGGTAGGAGAGTTGTCATTTTGGAGACACTTGCTAAATATAGGTCGTGTGTTGTAATGTTGGACCTTGATTGTGATGATCTGGTCAATGAAATGTTTGGCACCTTTCTTGCCGTTGCGAGGTTAGTTTAA

Coding sequence (CDS)

ATGGCTCATAAGCTTCAGCAACAGCTCAAGGAGGTGGGATCCAAGCTCCAGACTCCACCTGCCACTAAAGATGCTCTCATTAAACTCTTGAAGCAAGCTGTCGGATACCTTTCTGAGTTGGATCAGTCGCCGTCAGCTTCAATTTTGGAGTCAATGCAACCTTTTATCGATGCAATTATCAAACCGGAATTACTTCAACACCAAGATAGAGATGTGAAACTTCTAGTTGCAACGTGTATTTGTGAAATAACACGAATAACAGCCCCTGAAGCTCCTTATACGGATGATGTTTTAAAGGATATCTTTCACTTGATAGTGGGCACTTTTAGTGGATTAAATGATACTACTGGTCCTTCATTTGGTAGGAGAGTTGTCATTTTGGAGACACTTGCTAAATATAGGTCGTGTGTTGTAATGTTGGACCTTGATTGTGATGATCTGGTCAATGAAATGTTTGGCACCTTTCTTGCCGTTGCGAGGTTAGTTTAA

Protein sequence

MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAIIKPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSFGRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVARLV*
Homology
[Close]
BLAST of MELO3C025569 vs. Swiss-Prot
Match: PDS5A_CHICK (Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-17
Identity = 56/148 (37.84%), Postives = 77/148 (52.03%), Query Frame = 1 

Query: 13  GSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAIIKPELLQHQDRDV 72
           G K  T   T D ++K LK  V    ++DQ  S    +   P    +     L++ ++DV
Sbjct: 22  GVKETTDKITNDEVVKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDV 81

Query: 73  KLLVATCICEITRITAPEAPYTD-DVLKDIFHLIVGTFSGLNDTTGPSFGRRVVILETLA 132
           +LLVA C+ +I RI APEAPYT  D LKDIF  I     GL DT  P F R   +LE LA
Sbjct: 82  RLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLA 141

Query: 133 KYRSCVVMLDL-DCDDLVNEMFGTFLAV 159
             +S  +  +L DC+++  ++F T  +V
Sbjct: 142 WVKSYNICFELEDCNEIFIQLFRTLFSV 168

[Close]
BLAST of MELO3C025569 vs. Swiss-Prot
Match: PD5BB_XENLA (Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17
Identity = 53/155 (34.19%), Postives = 83/155 (53.55%), Query Frame = 1 

Query: 9   LKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII---KPELL 68
           +KE+  K+     +K+ +++ LK  V    ++DQ       E  + +++  +       L
Sbjct: 19  VKEISDKI-----SKEEMVRRLKMVVKTFMDMDQDSE----EEKEQYLNLALHLASDFFL 78

Query: 69  QHQDRDVKLLVATCICEITRITAPEAPYTD-DVLKDIFHLIVGTFSGLNDTTGPSFGRRV 128
           +H D+DV+LLVA C+ +I RI APEAPYT  D LKDIF  I     GL DT  P F R  
Sbjct: 79  KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 138

Query: 129 VILETLAKYRSCVVMLDL-DCDDLVNEMFGTFLAV 159
            +LE +A  +S  +  +L DC+++  +++ T  +V
Sbjct: 139 YLLENIAWVKSYNICFELEDCNEIFTQLYRTLFSV 164

[Close]
BLAST of MELO3C025569 vs. Swiss-Prot
Match: PDS5A_HUMAN (Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17
Identity = 57/148 (38.51%), Postives = 77/148 (52.03%), Query Frame = 1 

Query: 13  GSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAIIKPELLQHQDRDV 72
           G K  T   T D +IK LK  V    ++DQ  S    +   P    +     L++ ++DV
Sbjct: 28  GVKEITDKITTDEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDV 87

Query: 73  KLLVATCICEITRITAPEAPYTD-DVLKDIFHLIVGTFSGLNDTTGPSFGRRVVILETLA 132
           +LLVA C+ +I RI APEAPYT  D LKDIF  I     GL DT  P F R   +LE LA
Sbjct: 88  RLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLA 147

Query: 133 KYRSCVVMLDL-DCDDLVNEMFGTFLAV 159
             +S  +  +L DC+++  ++F T  +V
Sbjct: 148 WVKSYNICFELEDCNEIFIQLFRTLFSV 174

[Close]
BLAST of MELO3C025569 vs. Swiss-Prot
Match: PDS5A_MOUSE (Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=1 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17
Identity = 57/148 (38.51%), Postives = 77/148 (52.03%), Query Frame = 1 

Query: 13  GSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAIIKPELLQHQDRDV 72
           G K  T   T D +IK LK  V    ++DQ  S    +   P    +     L++ ++DV
Sbjct: 27  GVKEITDKITTDEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDV 86

Query: 73  KLLVATCICEITRITAPEAPYTD-DVLKDIFHLIVGTFSGLNDTTGPSFGRRVVILETLA 132
           +LLVA C+ +I RI APEAPYT  D LKDIF  I     GL DT  P F R   +LE LA
Sbjct: 87  RLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLA 146

Query: 133 KYRSCVVMLDL-DCDDLVNEMFGTFLAV 159
             +S  +  +L DC+++  ++F T  +V
Sbjct: 147 WVKSYNICFELEDCNEIFIQLFRTLFSV 173

[Close]
BLAST of MELO3C025569 vs. Swiss-Prot
Match: PDS5A_RAT (Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17
Identity = 57/148 (38.51%), Postives = 77/148 (52.03%), Query Frame = 1 

Query: 13  GSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAIIKPELLQHQDRDV 72
           G K  T   T D +IK LK  V    ++DQ  S    +   P    +     L++ ++DV
Sbjct: 27  GVKEITDKITTDEMIKRLKMVVKTFMDMDQD-SEDEKQQYLPLALHLASEFFLRNPNKDV 86

Query: 73  KLLVATCICEITRITAPEAPYTD-DVLKDIFHLIVGTFSGLNDTTGPSFGRRVVILETLA 132
           +LLVA C+ +I RI APEAPYT  D LKDIF  I     GL DT  P F R   +LE LA
Sbjct: 87  RLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLA 146

Query: 133 KYRSCVVMLDL-DCDDLVNEMFGTFLAV 159
             +S  +  +L DC+++  ++F T  +V
Sbjct: 147 WVKSYNICFELEDCNEIFIQLFRTLFSV 173

[Close]
BLAST of MELO3C025569 vs. TrEMBL
Match: A0A0A0LW18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172630 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 2.3e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII
Sbjct: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF
Sbjct: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 160

[Close]
BLAST of MELO3C025569 vs. TrEMBL
Match: A0A061GGJ0_THECC (Androgen induced inhibitor of proliferation / pds5 isoform 1 OS=Theobroma cacao GN=TCM_030447 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.5e-71
Identity = 135/160 (84.38%), Postives = 150/160 (93.75%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MA KL+QQLKEVGSKL++PP+TKDAL+KLLKQA   LSELDQSP +SI+ESMQPF++AI+
Sbjct: 1   MAQKLEQQLKEVGSKLESPPSTKDALLKLLKQAATCLSELDQSPPSSIMESMQPFLNAIV 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELL+HQDRD KLLVATCICEITRITAPEAPY+DDVLKDIFHLIVGTF GL+DT+GPSF
Sbjct: 61  KPELLKHQDRDAKLLVATCICEITRITAPEAPYSDDVLKDIFHLIVGTFHGLSDTSGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDL+CDDLVNEMF TF AV R
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFFAVVR 160

[Close]
BLAST of MELO3C025569 vs. TrEMBL
Match: A0A061GHF7_THECC (Androgen induced inhibitor of proliferation / pds5 isoform 2 OS=Theobroma cacao GN=TCM_030447 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 4.5e-71
Identity = 135/160 (84.38%), Postives = 150/160 (93.75%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MA KL+QQLKEVGSKL++PP+TKDAL+KLLKQA   LSELDQSP +SI+ESMQPF++AI+
Sbjct: 1   MAQKLEQQLKEVGSKLESPPSTKDALLKLLKQAATCLSELDQSPPSSIMESMQPFLNAIV 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELL+HQDRD KLLVATCICEITRITAPEAPY+DDVLKDIFHLIVGTF GL+DT+GPSF
Sbjct: 61  KPELLKHQDRDAKLLVATCICEITRITAPEAPYSDDVLKDIFHLIVGTFHGLSDTSGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDL+CDDLVNEMF TF AV R
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFFAVVR 160

[Close]
BLAST of MELO3C025569 vs. TrEMBL
Match: M5WQQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000138mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.6e-71
Identity = 136/160 (85.00%), Postives = 149/160 (93.12%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MA  L+QQL+EVGSKL+TP ++KDAL+KLLKQA   LSELDQSP AS LESMQPF++AI+
Sbjct: 1   MAQNLEQQLREVGSKLETPHSSKDALVKLLKQAASCLSELDQSPPASTLESMQPFLNAIV 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELL+HQDRDVKLLVATCICEITRITAPEAPY+DDVLKDIFHLIVGTFSGL DT+GPSF
Sbjct: 61  KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFHLIVGTFSGLKDTSGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDL+CDDLVNEMF TF AVAR
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFFAVAR 160

[Close]
BLAST of MELO3C025569 vs. TrEMBL
Match: B9T579_RICCO (Androgen induced inhibitor of proliferation (As3) / pds5, putative OS=Ricinus communis GN=RCOM_1065770 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.8e-70
Identity = 132/159 (83.02%), Postives = 149/159 (93.71%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MA KL++QLKEVGSKL+ PP+TKDAL+KLLKQA   L E+DQSPSA++LESMQPF++AI+
Sbjct: 1   MALKLEEQLKEVGSKLENPPSTKDALVKLLKQAAACLPEMDQSPSATVLESMQPFLNAIV 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELL+HQDRDVKLLVATCICEITRITAPEAPY+DD+LKDIFHLIVGTFSGL+DT+GPSF
Sbjct: 61  KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDILKDIFHLIVGTFSGLSDTSGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVA 160
           GRRVVILETLAKYRSCVVMLDL+CDDLVN MF TF  VA
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLECDDLVNTMFSTFFTVA 159

[Close]
BLAST of MELO3C025569 vs. TAIR10
Match: AT5G47690.3 (AT5G47690.3 binding)

HSP 1 Score: 234.6 bits (597), Expect = 4.4e-62
Identity = 112/160 (70.00%), Postives = 138/160 (86.25%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MA K ++QLKE+GSKL   P +KD+L+KLLK+A   LSEL+QSP  ++L+S+QPF+DA+I
Sbjct: 1   MAQKPEEQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQSPPPAVLKSIQPFLDAVI 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPE+L HQD+DVKLLVA+C+ EITRITAPEAPY+D+++KDIF LIV  F+GLND +GPSF
Sbjct: 61  KPEILNHQDKDVKLLVASCVSEITRITAPEAPYSDNIMKDIFQLIVSAFAGLNDVSGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRV+ILET+AKYRSCVVMLDL+CDDLV E+F TFL VAR
Sbjct: 121 GRRVLILETVAKYRSCVVMLDLECDDLVKEVFTTFLDVAR 160

[Close]
BLAST of MELO3C025569 vs. TAIR10
Match: AT4G31880.1 (AT4G31880.1 LOCATED IN: cytosol, chloroplast)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-36
Identity = 75/157 (47.77%), Postives = 105/157 (66.88%), Query Frame = 1 

Query: 4   KLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAIIKPE 63
           +L+ Q+ E G KL  PP++ D L+  L +    L+E++QSP  S+  ++ P +  ++  +
Sbjct: 7   ELENQIIEAGEKLIDPPSSLDELLSFLDKLFVSLAEVEQSPPDSMQNALTPLMKGLVGGK 66

Query: 64  LLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSFGRR 123
           L +H D DVK+ VA CI EITRITAP+APY DD +K++F LIV +F  L D +  S+ +R
Sbjct: 67  LFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSRSYAKR 126

Query: 124 VVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           + ILET+AK RSCVVMLDL+CD L+ EMF  FL   R
Sbjct: 127 ISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIR 163

[Close]
BLAST of MELO3C025569 vs. TAIR10
Match: AT1G15940.1 (AT1G15940.1 Tudor/PWWP/MBT superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-30
Identity = 66/155 (42.58%), Postives = 98/155 (63.23%), Query Frame = 1 

Query: 6   QQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAIIKPELL 65
           +Q L +    L  P  + DA + LL+     L+ ++Q  S+S+ +++ P + A++  +LL
Sbjct: 13  EQALTDAAENLLKPHFSTDATLSLLEVMESLLATVEQDLSSSVQKALHPPMRALVSADLL 72

Query: 66  QHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSFGRRVV 125
           ++ D DV++ V +C+ EI RITAPEAPY D+ +KDIF + +  F  L D +  S+ +  V
Sbjct: 73  RNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIEAFEKLADASSRSYRKAEV 132

Query: 126 ILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           ILET+AK RS +VMLDL+CDDLV EMF  FL + R
Sbjct: 133 ILETVAKVRSSLVMLDLECDDLVLEMFQRFLKIIR 167

[Close]
BLAST of MELO3C025569 vs. TAIR10
Match: AT1G77600.3 (AT1G77600.3 ARM repeat superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 7.6e-30
Identity = 67/153 (43.79%), Postives = 95/153 (62.09%), Query Frame = 1 

Query: 16  LQTPPATKDALIKLLKQAVGYLSELDQSPSASILES--------MQPFIDAIIKPELLQH 75
           LQ     KD+L+KLL++    LS++DQ PSA+  E         ++P   +IIK  LL++
Sbjct: 17  LQLSRPNKDSLVKLLREVANTLSKIDQ-PSATNKEKGLKLIEAELRPLKKSIIKHALLKN 76

Query: 76  QDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSFGRRVVIL 135
           +D DV LLV  C+ E+ RI AP  P+ D+ L+DIF L +  FS L+DT  P F +R  IL
Sbjct: 77  RDNDVSLLVTVCVSELFRILAPHLPFEDEYLRDIFTLFIAEFSELSDTVSPYFSKRAKIL 136

Query: 136 ETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           ET+++ + C++MLD DC DLV+EMF  F ++ R
Sbjct: 137 ETVSRLKFCLLMLDEDCQDLVHEMFNMFFSLVR 168

[Close]
BLAST of MELO3C025569 vs. TAIR10
Match: AT1G80810.2 (AT1G80810.2 Tudor/PWWP/MBT superfamily protein)

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-22
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1 

Query: 54  PFIDAIIKPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLN 113
           P  +A++  +LL H D DV++ V +C+ EI RITAPE PY+DD++K+IF L +  F  L 
Sbjct: 7   PSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIEAFEKLA 66

Query: 114 DTTGPSFGRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           D +  S+ +   +L+ +AK +SC+VMLDL+C DL+ +MF  F    R
Sbjct: 67  DASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIR 113

[Close]
BLAST of MELO3C025569 vs. NCBI nr
Match: gi|778659622|ref|XP_011654767.1| (PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 3.3e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII
Sbjct: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF
Sbjct: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 160

[Close]
BLAST of MELO3C025569 vs. NCBI nr
Match: gi|700209896|gb|KGN64992.1| (hypothetical protein Csa_1G172630 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 3.3e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII
Sbjct: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF
Sbjct: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 160

[Close]
BLAST of MELO3C025569 vs. NCBI nr
Match: gi|659127303|ref|XP_008463634.1| (PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A [Cucumis melo])

HSP 1 Score: 316.2 bits (809), Expect = 3.3e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII
Sbjct: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF
Sbjct: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 160

[Close]
BLAST of MELO3C025569 vs. NCBI nr
Match: gi|778659626|ref|XP_011654769.1| (PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X2 [Cucumis sativus])

HSP 1 Score: 316.2 bits (809), Expect = 3.3e-83
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII
Sbjct: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF
Sbjct: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 160

[Close]
BLAST of MELO3C025569 vs. NCBI nr
Match: gi|590627181|ref|XP_007026378.1| (Androgen induced inhibitor of proliferation / pds5 isoform 1 [Theobroma cacao])

HSP 1 Score: 275.4 bits (703), Expect = 6.4e-71
Identity = 135/160 (84.38%), Postives = 150/160 (93.75%), Query Frame = 1 

Query: 1   MAHKLQQQLKEVGSKLQTPPATKDALIKLLKQAVGYLSELDQSPSASILESMQPFIDAII 60
           MA KL+QQLKEVGSKL++PP+TKDAL+KLLKQA   LSELDQSP +SI+ESMQPF++AI+
Sbjct: 1   MAQKLEQQLKEVGSKLESPPSTKDALLKLLKQAATCLSELDQSPPSSIMESMQPFLNAIV 60

Query: 61  KPELLQHQDRDVKLLVATCICEITRITAPEAPYTDDVLKDIFHLIVGTFSGLNDTTGPSF 120
           KPELL+HQDRD KLLVATCICEITRITAPEAPY+DDVLKDIFHLIVGTF GL+DT+GPSF
Sbjct: 61  KPELLKHQDRDAKLLVATCICEITRITAPEAPYSDDVLKDIFHLIVGTFHGLSDTSGPSF 120

Query: 121 GRRVVILETLAKYRSCVVMLDLDCDDLVNEMFGTFLAVAR 161
           GRRVVILETLAKYRSCVVMLDL+CDDLVNEMF TF AV R
Sbjct: 121 GRRVVILETLAKYRSCVVMLDLECDDLVNEMFSTFFAVVR 160

The following BLAST results are available for this feature:
BLAST of MELO3C025569 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PDS5A_CHICK4.1e-1737.84Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 ... [more]
PD5BB_XENLA5.3e-1734.19Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b ... [more]
PDS5A_HUMAN5.3e-1738.51Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 S... [more]
PDS5A_MOUSE5.3e-1738.51Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=1 S... [more]
PDS5A_RAT5.3e-1738.51Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a P... [more]
BLAST of MELO3C025569 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW18_CUCSA2.3e-83100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G172630 PE=4 SV=1[more]
A0A061GGJ0_THECC4.5e-7184.38Androgen induced inhibitor of proliferation / pds5 isoform 1 OS=Theobroma cacao ... [more]
A0A061GHF7_THECC4.5e-7184.38Androgen induced inhibitor of proliferation / pds5 isoform 2 OS=Theobroma cacao ... [more]
M5WQQ9_PRUPE7.6e-7185.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000138mg PE=4 SV=1[more]
B9T579_RICCO3.8e-7083.02Androgen induced inhibitor of proliferation (As3) / pds5, putative OS=Ricinus co... [more]
BLAST of MELO3C025569 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47690.34.4e-6270.00 binding[more]
AT4G31880.11.4e-3647.77 LOCATED IN: cytosol, chloroplast[more]
AT1G15940.11.5e-3042.58 Tudor/PWWP/MBT superfamily protein[more]
AT1G77600.37.6e-3043.79 ARM repeat superfamily protein[more]
AT1G80810.21.5e-2243.93 Tudor/PWWP/MBT superfamily protein[more]
BLAST of MELO3C025569 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778659622|ref|XP_011654767.1|3.3e-83100.00PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Cucumis ... [more]
gi|700209896|gb|KGN64992.1|3.3e-83100.00hypothetical protein Csa_1G172630 [Cucumis sativus][more]
gi|659127303|ref|XP_008463634.1|3.3e-83100.00PREDICTED: LOW QUALITY PROTEIN: sister chromatid cohesion protein PDS5 homolog A... [more]
gi|778659626|ref|XP_011654769.1|3.3e-83100.00PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X2 [Cucumis ... [more]
gi|590627181|ref|XP_007026378.1|6.4e-7184.38Androgen induced inhibitor of proliferation / pds5 isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006281 DNA repair
biological_process GO:0009556 microsporogenesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003674 molecular_function
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025569T1MELO3C025569T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12663ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATEDcoord: 4..160
score: 3.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C025569CSPI01G15310Wild cucumber (PI 183967)cpimeB030
MELO3C025569Cucsa.319400Cucumber (Gy14) v1cgymeB526
MELO3C025569Cp4.1LG20g06830Cucurbita pepo (Zucchini)cpemeB472
MELO3C025569CsGy1G015070Cucumber (Gy14) v2cgybmeB028
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None