MELO3C025556 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025556
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Multidrug resistance protein MdtC
Location	chr12 : 13378406 .. 13378911 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGAAAGCTCGAGTTAACAAACAAGGACAATACGACAACGATGACGTTCAACAAGTCGTCCATAAAATAGTAAGTCATTACTTGTAAATCACACATTTCAATTATCCACTACATAAGTATTTCTATAACTTACATTAATTTTGCTATCTTTTTAGGATGAGATATCAATGAATACGGATTCATCGTCTGTGAATAGACACTATTCGAATGATGTGTTAATCCAGGCATTGGATACAAAAGAGAACAATGATCGTGTGCATGGGGTTAGTGGATACGTTACTCCAACAACATACTTTCATTCAGTTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCGAAGGCGAGTTAGTGAATTAGAGGCACAAATTCACCCAAACTTGTCTACATCATTGTCTGCACACAGGAGTTATTCAAGGCGGATAATGTTAGAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGGAATCGATGGACTAA

mRNA sequence

ATGTTGAAGAAAGCTCGAGTTAACAAACAAGGACAATACGACAACGATGACGTTCAACAAGTCGTCCATAAAATAGATGAGATATCAATGAATACGGATTCATCGTCTGTGAATAGACACTATTCGAATGATGTGTTAATCCAGGCATTGGATACAAAAGAGAACAATGATCGTGTGCATGGGGTTAGTGGATACGTTACTCCAACAACATACTTTCATTCAGTTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCGAAGGCGAGTTAGTGAATTAGAGGCACAAATTCACCCAAACTTGTCTACATCATTGTCTGCACACAGGAGTTATTCAAGGCGGATAATGTTAGAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGGAATCGATGGACTAA

Coding sequence (CDS)

ATGTTGAAGAAAGCTCGAGTTAACAAACAAGGACAATACGACAACGATGACGTTCAACAAGTCGTCCATAAAATAGATGAGATATCAATGAATACGGATTCATCGTCTGTGAATAGACACTATTCGAATGATGTGTTAATCCAGGCATTGGATACAAAAGAGAACAATGATCGTGTGCATGGGGTTAGTGGATACGTTACTCCAACAACATACTTTCATTCAGTTAAGAAAACATCAAAAGATGAGGCGAACATTCTAGTTGAGAATGAAGAACTCCGAAGGCGAGTTAGTGAATTAGAGGCACAAATTCACCCAAACTTGTCTACATCATTGTCTGCACACAGGAGTTATTCAAGGCGGATAATGTTAGAGGGGATTGAAGAGAAGGGTAAGAGAATAGAAGTGGAATCGATGGACTAA

Protein sequence

MLKKARVNKQGQYDNDDVQQVVHKIDEISMNTDSSSVNRHYSNDVLIQALDTKENNDRVHGVSGYVTPTTYFHSVKKTSKDEANILVENEELRRRVSELEAQIHPNLSTSLSAHRSYSRRIMLEGIEEKGKRIEVESMD*

Homology

[Close]

BLAST of MELO3C025556 vs. TrEMBL
Match: M5Y0E0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026422mg PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.3e-06
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 1


Query: 3   KKARVNKQGQYDNDDVQQVVHKIDEISMNTDSSSVNRHYSNDVLIQALDTKENNDRVHGV 62
           KKAR +KQG   N  V +    ID+        +++   SNDVL  AL T E   RV GV
Sbjct: 195 KKAREDKQGNIPNPKVAEKAKLIDDFKKKVSEGTLSISGSNDVLTLALGTPELGGRVRGV 254

Query: 63  SGYVTPTTYFHSVKKTSKDEANILVEN--EELRRRVSELEAQIHPNLSTSLSAHR 116
              V+PT +F+ ++      A+ L E+  E +R    ++EA+   N+  ++ A R
Sbjct: 255 GARVSPTQFFNLLRPQRVKFADKLKESVMEAVREEAKKMEAKAKENVLEAVRAER 309

[Close]

BLAST of MELO3C025556 vs. NCBI nr
Match: gi|659109765|ref|XP_008454865.1| (PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 30  MNTDSSSVNRHYSNDVLIQALDTKENNDRVHGVSGYVTPTTYFHSVKKTSKDEANILVEN 89
           MNTDSSS+NR+YSNDVL QAL TKE+N RV G+  YVTP TY+HSVKKTSKDE NI++E 
Sbjct: 1   MNTDSSSMNRYYSNDVLTQALGTKEHNGRVRGIGEYVTPITYYHSVKKTSKDEVNIVLEI 60

Query: 90  EELRRRVSELEAQIH 105
           EELRRR   LEAQ H
Sbjct: 61  EELRRRDELLEAQAH 75

[Close]

BLAST of MELO3C025556 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 6.0e-09
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 1


Query: 15  NDDVQQVVHKIDEISMNTDSSSVNRHYSNDVLIQALDTKENNDRVHGVSGYVTPTTYFHS 74
           N+DV++ V+ ID+IS       V++  S + L QAL T E++ RV GV G+VT T YFH+
Sbjct: 110 NEDVREFVNHIDDISR----IYVDKEPSPNDLAQALGTNEHSGRVRGVGGFVTRTAYFHT 169

Query: 75  VKKTSKDEANI---LVENEELRRRVSELEAQIHPNLSTSLSAHRSYSRRIMLEGIEEKGK 134
            K + K   NI     ENE+L   V ELE+      ST   AH S SR  +   I+ K +
Sbjct: 170 SKHSKKQSENIEKLREENEKLCLGVQELESIHLTTQSTPTYAHASCSRPRLEYDIQPK-E 229

Query: 135 RIEVESMD 140
           +++ E M+
Sbjct: 230 KLQEEKMN 232

[Close]

BLAST of MELO3C025556 vs. NCBI nr
Match: gi|596292391|ref|XP_007226494.1| (hypothetical protein PRUPE_ppa026422mg [Prunus persica])

HSP 1 Score: 59.3 bits (142), Expect = 6.2e-06
Identity = 38/115 (33.04%), Postives = 58/115 (50.43%), Query Frame = 1


Query: 3   KKARVNKQGQYDNDDVQQVVHKIDEISMNTDSSSVNRHYSNDVLIQALDTKENNDRVHGV 62
           KKAR +KQG   N  V +    ID+        +++   SNDVL  AL T E   RV GV
Sbjct: 195 KKAREDKQGNIPNPKVAEKAKLIDDFKKKVSEGTLSISGSNDVLTLALGTPELGGRVRGV 254

Query: 63  SGYVTPTTYFHSVKKTSKDEANILVEN--EELRRRVSELEAQIHPNLSTSLSAHR 116
              V+PT +F+ ++      A+ L E+  E +R    ++EA+   N+  ++ A R
Sbjct: 255 GARVSPTQFFNLLRPQRVKFADKLKESVMEAVREEAKKMEAKAKENVLEAVRAER 309

The following BLAST results are available for this feature:

BLAST of MELO3C025556 vs. TrEMBL


Match Name	E-value	Identity	Description
M5Y0E0_PRUPE	4.3e-06	33.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026422mg PE=4 SV=1	[more]

BLAST of MELO3C025556 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109765\|ref\|XP_008454865.1\|	1.4e-21	73.33	PREDICTED: trans-resveratrol di-O-methyltransferase-like [Cucumis melo]	[more]
gi\|778708464\|ref\|XP_011656204.1\|	6.0e-09	39.06	PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus]	[more]
gi\|596292391\|ref\|XP_007226494.1\|	6.2e-06	33.04	hypothetical protein PRUPE_ppa026422mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025556T1	MELO3C025556T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 82..102 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025556	Wild cucumber (PI 183967)	cpimeB016
MELO3C025556	Cucumber (Chinese Long) v2	cumeB029
MELO3C025556	Watermelon (Charleston Gray)	mewcgB142
MELO3C025556	Watermelon (97103) v1	mewmB168
MELO3C025556	Cucurbita pepo (Zucchini)	cpemeB472
MELO3C025556	Bottle gourd (USVL1VR-Ls)	lsimeB181
MELO3C025556	Cucumber (Gy14) v2	cgybmeB014
MELO3C025556	Cucumber (Chinese Long) v3	cucmeB014
MELO3C025556	Watermelon (97103) v2	mewmbB144
MELO3C025556	Cucurbita maxima (Rimu)	cmameB199