MELO3C025544 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025544
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	UvrABC system protein B
Location	chr12 : 13192575 .. 13193081 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGGTAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGGTTTGCACATTTTCTATTCTTAAATTTTTTTTTGTTCATCTTCTTCACAAATGACTTATTAATTGTTTACTTCTGCAGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG

mRNA sequence

ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGGTAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG

Coding sequence (CDS)

ATGAGGCAGGGGACGTATTTTGAGGATAACAAACATCATTTGGTGAGTAGTATCATTCCTTCCCTTTCACAGCCCAAACTACTCAAGAACCAAGGGAACAACTTAGGTGGTAAAGAAATTCGCTTGGTTGAGGCGATGGCTACTACTCTTGAGGAGGAGATAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAATAAAGCGAAGGTATCAGGTGATGATCTCGACAGAAGGGGTCCAAGGGAAGTCCCTAATGTTTCACCACTGTCACCTTTGAACGCTCATCTTGAAGGCCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGCAATTGATTCTACCATTGAGGAAGTTGGTACCTCGAAGACTCCCGCCTCTAAACCAACCGAATAG

Protein sequence

MRQGTYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSSKSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTSKTPASKPTE*

Homology

[Close]

BLAST of MELO3C025544 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 90/138 (65.22%), Postives = 97/138 (70.29%), Query Frame = 1


Query: 5   TYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSS 64
           TYFEDN+HHLVSS I   SQP+L KN+G+NLGGKEI LVEAMA  LEEE+ EHKDESDSS
Sbjct: 303 TYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDESDSS 362

Query: 65  KSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGPHAID 124
           KSDRHWKRPL KAKVSGD  D                      LIE  SDESLTGPH +D
Sbjct: 363 KSDRHWKRPLKKAKVSGDHPD------------------WFARLIEPDSDESLTGPHVVD 422

Query: 125 STIEEVGTSKTPASKPTE 143
           S  EEVGTSKTP +KP E
Sbjct: 423 SAFEEVGTSKTPVNKPAE 422

[Close]

BLAST of MELO3C025544 vs. TrEMBL
Match: A0A0A0K338_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G160510 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.8e-15
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 76  KAKVSGDDLDRRGPR--EVPNVSPLSPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTS 135
           KAKVSGD+   RG     +PNV PLSPL+ HLEGL+++ SDESLTGPH  D+TIE+VG  
Sbjct: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61

Query: 136 KTPASKPTE 143
           KTPA+KP E
Sbjct: 62  KTPAAKPVE 70

[Close]

BLAST of MELO3C025544 vs. TrEMBL
Match: A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 46 MATTLEEEINEHKDESDSSKSDRHWKRPLNKAK 79
          MA TLE+++ EHKDESD++KSDRHWKRPL KAK
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK 33

[Close]

BLAST of MELO3C025544 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 170.2 bits (430), Expect = 2.5e-39
Identity = 90/138 (65.22%), Postives = 97/138 (70.29%), Query Frame = 1


Query: 5   TYFEDNKHHLVSSIIPSLSQPKLLKNQGNNLGGKEIRLVEAMATTLEEEINEHKDESDSS 64
           TYFEDN+HHLVSS I   SQP+L KN+G+NLGGKEI LVEAMA  LEEE+ EHKDESDSS
Sbjct: 303 TYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDESDSS 362

Query: 65  KSDRHWKRPLNKAKVSGDDLDRRGPREVPNVSPLSPLNAHLEGLIELGSDESLTGPHAID 124
           KSDRHWKRPL KAKVSGD  D                      LIE  SDESLTGPH +D
Sbjct: 363 KSDRHWKRPLKKAKVSGDHPD------------------WFARLIEPDSDESLTGPHVVD 422

Query: 125 STIEEVGTSKTPASKPTE 143
           S  EEVGTSKTP +KP E
Sbjct: 423 SAFEEVGTSKTPVNKPAE 422

[Close]

BLAST of MELO3C025544 vs. NCBI nr
Match: gi|700188832|gb|KGN44065.1| (hypothetical protein Csa_7G160510 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1


Query: 76  KAKVSGDDLDRRGPR--EVPNVSPLSPLNAHLEGLIELGSDESLTGPHAIDSTIEEVGTS 135
           KAKVSGD+   RG     +PNV PLSPL+ HLEGL+++ SDESLTGPH  D+TIE+VG  
Sbjct: 2   KAKVSGDNSCERGSSAMRIPNVPPLSPLDHHLEGLVDVDSDESLTGPHMADTTIEKVGIL 61

Query: 136 KTPASKPTE 143
           KTPA+KP E
Sbjct: 62  KTPAAKPVE 70

[Close]

BLAST of MELO3C025544 vs. NCBI nr
Match: gi|700195620|gb|KGN50797.1| (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-06
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 1


Query: 46 MATTLEEEINEHKDESDSSKSDRHWKRPLNKAK 79
          MA TLE+++ EHKDESD++KSDRHWKRPL KAK
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK 33

The following BLAST results are available for this feature:

BLAST of MELO3C025544 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	1.8e-39	65.22	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0K338_CUCSA	8.8e-15	63.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G160510 PE=4 SV=1	[more]
A0A0A0KQU9_CUCSA	5.7e-06	75.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1	[more]

BLAST of MELO3C025544 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136292\|gb\|ADN34118.1\|	2.5e-39	65.22	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700188832\|gb\|KGN44065.1\|	1.3e-14	63.77	hypothetical protein Csa_7G160510 [Cucumis sativus]	[more]
gi\|700195620\|gb\|KGN50797.1\|	8.2e-06	75.76	hypothetical protein Csa_5G264300 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025544T1	MELO3C025544T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 40..67 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025544	Wax gourd	mewgoB167
MELO3C025544	Cucumber (Gy14) v1	cgymeB326
MELO3C025544	Cucurbita maxima (Rimu)	cmameB199
MELO3C025544	Cucurbita maxima (Rimu)	cmameB366
MELO3C025544	Cucurbita moschata (Rifu)	cmomeB186
MELO3C025544	Cucurbita moschata (Rifu)	cmomeB349
MELO3C025544	Wild cucumber (PI 183967)	cpimeB016
MELO3C025544	Cucumber (Chinese Long) v2	cumeB029
MELO3C025544	Watermelon (Charleston Gray)	mewcgB142
MELO3C025544	Watermelon (97103) v1	mewmB168
MELO3C025544	Cucurbita pepo (Zucchini)	cpemeB028
MELO3C025544	Cucurbita pepo (Zucchini)	cpemeB472
MELO3C025544	Bottle gourd (USVL1VR-Ls)	lsimeB181
MELO3C025544	Cucumber (Gy14) v2	cgybmeB014
MELO3C025544	Silver-seed gourd	carmeB0049
MELO3C025544	Silver-seed gourd	carmeB1006
MELO3C025544	Cucumber (Chinese Long) v3	cucmeB014
MELO3C025544	Cucumber (Chinese Long) v3	cucmeB527
MELO3C025544	Watermelon (97103) v2	mewmbB144