MELO3C025530 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025530
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Casein kinase-like protein
Location	chr12 : 12930922 .. 12931472 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAAAGGTTCATCTGCTTCAATTTTGTAAATATGAGATCTATTGTTGCTTTGGTGATGGATAATTTTGCTCTTTCCTGTCTCCTGTACTTCGTACTATGATCGATGATAAAGACCTTGTTATCTTGGTTTTCTTACACAATTAAGAAATGATTTTATTCTTATATTTCCTGCCTCTATCTTTATTGGGCCCAACAAAACAATAGGTAAATGAGATTAAGAGAATAAACTACAAGGCGTGGGAATTTTATTTTGTGCAAAATCTCAATGTAAATTTAAGTCTGTTGGATTTTGATTTCAAGATGCTACCATTCTACTTCTTTAAGGACACAATATACCCAACAATCATACAAAGTGAGTGATTCTTTTCCCTTCAAGTGGATAAACAAAAAATGGAGAAAAGGGTTTCATGTGACCTCAATGGCAACTGCAGGAAACCGATGGGGTGTGTCATGTGATGCAATGCTGGTTTTAGTGATCAGGTTGAGTTTTGTTTATGTTTTTAGCATCCGCAGTCAACTAAATATGTTAATATTATTATTCTTGTGA

mRNA sequence

ATGTCAAAAGGTTCATCTGCTTCAATTTTGACACAATATACCCAACAATCATACAAAGTGAGTGATTCTTTTCCCTTCAAGTGGATAAACAAAAAATGGAGAAAAGGGTTTCATGTGACCTCAATGGCAACTGCAGGAAACCGATGGGGTGTGTCATGTGATGCAATGCTGGTTTTAGTGATCAGGTTGAGTTTTGTTTATGTTTTTAGCATCCGCAGTCAACTAAATATGTTAATATTATTATTCTTGTGA

Coding sequence (CDS)

ATGTCAAAAGGTTCATCTGCTTCAATTTTGACACAATATACCCAACAATCATACAAAGTGAGTGATTCTTTTCCCTTCAAGTGGATAAACAAAAAATGGAGAAAAGGGTTTCATGTGACCTCAATGGCAACTGCAGGAAACCGATGGGGTGTGTCATGTGATGCAATGCTGGTTTTAGTGATCAGGTTGAGTTTTGTTTATGTTTTTAGCATCCGCAGTCAACTAAATATGTTAATATTATTATTCTTGTGA

Protein sequence

MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCDAMLVLVIRLSFVYVFSIRSQLNMLILLFL*

Homology

[Close]

BLAST of MELO3C025530 vs. TrEMBL
Match: Q9LID3_ARATH (Casein kinase-like protein OS=Arabidopsis thaliana GN=At3g13670 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-17
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 2   SKGSSASIL---TQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSC---DA 61
           S GSS  ++   TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAGNRWGV       
Sbjct: 558 SNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGNRWGVVMSRNSG 617

Query: 62  MLVLVIRLSFVY 68
               V+ L F+Y
Sbjct: 618 YSEQVVELDFLY 629

[Close]

BLAST of MELO3C025530 vs. TrEMBL
Match: K7MVL2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G300100 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCDAMLVLV 60
           MSKG      TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV         
Sbjct: 535 MSKG------TQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFS 594

Query: 61  IRLSFVYVFS 71
            ++ F++ F+
Sbjct: 595 DQVCFIFRFN 598

[Close]

BLAST of MELO3C025530 vs. TrEMBL
Match: A0A067FIB0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048600mg PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-16
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCD---AML 60
           MSKG      TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV         
Sbjct: 570 MSKG------TQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFS 629

Query: 61  VLVIRLSFVY 68
             V+ L F+Y
Sbjct: 630 EQVVELDFLY 633

[Close]

BLAST of MELO3C025530 vs. TrEMBL
Match: V4UA98_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014444mg PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-16
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCD---AML 60
           MSKG      TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV         
Sbjct: 570 MSKG------TQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFS 629

Query: 61  VLVIRLSFVY 68
             V+ L F+Y
Sbjct: 630 EQVVELDFLY 633

[Close]

BLAST of MELO3C025530 vs. TrEMBL
Match: A0A087H9B2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G150500 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.7e-16
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSC---DAML 60
           MSKG      TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV         
Sbjct: 563 MSKG------TQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNSGYS 622

Query: 61  VLVIRLSFVY 68
             V+ L F+Y
Sbjct: 623 EQVVELDFLY 626

[Close]

BLAST of MELO3C025530 vs. TAIR10
Match: AT3G13670.1 (AT3G13670.1 Protein kinase family protein)

HSP 1 Score: 94.7 bits (234), Expect = 2.8e-20
Identity = 48/72 (66.67%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 2   SKGSSASIL---TQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSC---DA 61
           S GSS  ++   TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAGNRWGV       
Sbjct: 558 SNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGNRWGVVMSRNSG 617

Query: 62  MLVLVIRLSFVY 68
               V+ L F+Y
Sbjct: 618 YSEQVVELDFLY 629

[Close]

BLAST of MELO3C025530 vs. TAIR10
Match: AT3G03940.1 (AT3G03940.1 Protein kinase family protein)

HSP 1 Score: 86.7 bits (213), Expect = 7.7e-18
Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = 1


Query: 2   SKGSSASIL---TQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSC---DA 61
           + GSS  ++   T YTQQSYKVSDSFPFKWINKKW++GFHVTSM TAG+RWGV       
Sbjct: 556 NNGSSLVVMAKGTPYTQQSYKVSDSFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNSG 615

Query: 62  MLVLVIRLSFVY 68
               V+ L F+Y
Sbjct: 616 YSEQVVELDFLY 627

[Close]

BLAST of MELO3C025530 vs. TAIR10
Match: AT2G25760.2 (AT2G25760.2 Protein kinase family protein)

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-17
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCD---AML 60
           MSKG      TQY QQSYKVSDSFPFKWINKKWR+GF+VTSMATAG++WG+      +  
Sbjct: 539 MSKG------TQYLQQSYKVSDSFPFKWINKKWREGFYVTSMATAGSKWGIVMSRGASFS 598

Query: 61  VLVIRLSFVY 68
             VI L F+Y
Sbjct: 599 DQVIELDFLY 602

[Close]

BLAST of MELO3C025530 vs. TAIR10
Match: AT5G18190.1 (AT5G18190.1 Protein kinase family protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-17
Identity = 40/51 (78.43%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGV 52
           MSKG+S      YTQQSYKVSDSFPFKWINKKW++ FHVTSM TAGNRWGV
Sbjct: 554 MSKGTS------YTQQSYKVSDSFPFKWINKKWKEDFHVTSMTTAGNRWGV 598

[Close]

BLAST of MELO3C025530 vs. TAIR10
Match: AT3G03930.1 (AT3G03930.1 protein kinase-related)

HSP 1 Score: 72.4 bits (176), Expect = 1.5e-13
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGV 52
           MSKG      T+Y QQSYK  DS P KW++KKW++GFHVTSM T G+RWGV
Sbjct: 151 MSKG------TRYIQQSYKTGDSIPLKWMDKKWKEGFHVTSMTTGGSRWGV 195

[Close]

BLAST of MELO3C025530 vs. NCBI nr
Match: gi|15231321|ref|NP_187977.1| (protein kinase family protein [Arabidopsis thaliana])

HSP 1 Score: 94.7 bits (234), Expect = 8.0e-17
Identity = 48/72 (66.67%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 2   SKGSSASIL---TQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSC---DA 61
           S GSS  ++   TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAGNRWGV       
Sbjct: 558 SNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGNRWGVVMSRNSG 617

Query: 62  MLVLVIRLSFVY 68
               V+ L F+Y
Sbjct: 618 YSEQVVELDFLY 629

[Close]

BLAST of MELO3C025530 vs. NCBI nr
Match: gi|947052286|gb|KRH01815.1| (hypothetical protein GLYMA_18G300100 [Glycine max])

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-16
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCDAMLVLV 60
           MSKG      TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV         
Sbjct: 535 MSKG------TQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFS 594

Query: 61  IRLSFVYVFS 71
            ++ F++ F+
Sbjct: 595 DQVCFIFRFN 598

[Close]

BLAST of MELO3C025530 vs. NCBI nr
Match: gi|567907145|ref|XP_006445886.1| (hypothetical protein CICLE_v10014444mg [Citrus clementina])

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-16
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCD---AML 60
           MSKG      TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV         
Sbjct: 570 MSKG------TQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFS 629

Query: 61  VLVIRLSFVY 68
             V+ L F+Y
Sbjct: 630 EQVVELDFLY 633

[Close]

BLAST of MELO3C025530 vs. NCBI nr
Match: gi|502100326|ref|XP_004491691.1| (PREDICTED: serine/threonine-protein kinase VRK1 [Cicer arietinum])

HSP 1 Score: 92.0 bits (227), Expect = 5.2e-16
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1   MSKGSSASIL---TQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCD--- 60
           ++ GSS  ++   TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV      
Sbjct: 521 VTNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNA 580

Query: 61  AMLVLVIRLSFVY 68
                V+ L F+Y
Sbjct: 581 GFSDQVVELDFLY 593

[Close]

BLAST of MELO3C025530 vs. NCBI nr
Match: gi|147766588|emb|CAN69523.1| (hypothetical protein VITISV_040873 [Vitis vinifera])

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-16
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1   MSKGSSASILTQYTQQSYKVSDSFPFKWINKKWRKGFHVTSMATAGNRWGVSCD---AML 60
           MSKG      TQYTQQSYKVSDSFPFKWINKKWR+GFHVTSMATAG+RWGV         
Sbjct: 533 MSKG------TQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFS 592

Query: 61  VLVIRLSFVY 68
             V+ L F+Y
Sbjct: 593 DQVVELDFLY 596

The following BLAST results are available for this feature:

BLAST of MELO3C025530 vs. TrEMBL


Match Name	E-value	Identity	Description
Q9LID3_ARATH	5.6e-17	66.67	Casein kinase-like protein OS=Arabidopsis thaliana GN=At3g13670 PE=2 SV=1	[more]
K7MVL2_SOYBN	3.6e-16	64.29	Uncharacterized protein OS=Glycine max GN=GLYMA_18G300100 PE=3 SV=1	[more]
A0A067FIB0_CITSI	3.6e-16	67.14	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048600mg PE=3 SV=1	[more]
V4UA98_9ROSI	3.6e-16	67.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10014444mg PE=3 SV=1	[more]
A0A087H9B2_ARAAL	4.7e-16	67.14	Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G150500 PE=3 SV=1	[more]

BLAST of MELO3C025530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13670.1	2.8e-20	66.67	Protein kinase family protein	[more]
AT3G03940.1	7.7e-18	59.72	Protein kinase family protein	[more]
AT2G25760.2	1.0e-17	62.86	Protein kinase family protein	[more]
AT5G18190.1	1.3e-17	78.43	Protein kinase family protein	[more]
AT3G03930.1	1.5e-13	62.75	protein kinase-related	[more]

BLAST of MELO3C025530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|15231321\|ref\|NP_187977.1\|	8.0e-17	66.67	protein kinase family protein [Arabidopsis thaliana]	[more]
gi\|947052286\|gb\|KRH01815.1\|	5.2e-16	64.29	hypothetical protein GLYMA_18G300100 [Glycine max]	[more]
gi\|567907145\|ref\|XP_006445886.1\|	5.2e-16	67.14	hypothetical protein CICLE_v10014444mg [Citrus clementina]	[more]
gi\|502100326\|ref\|XP_004491691.1\|	5.2e-16	63.01	PREDICTED: serine/threonine-protein kinase VRK1 [Cicer arietinum]	[more]
gi\|147766588\|emb\|CAN69523.1\|	6.7e-16	67.14	hypothetical protein VITISV_040873 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025530T1	MELO3C025530T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11909	CASEIN KINASE-RELATED	coord: 11..67 score: 6.6
None	No IPR available	PANTHER	PTHR11909:SF73	PROTEIN KINASE FAMILY PROTEIN	coord: 11..67 score: 6.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025530	Silver-seed gourd	carmeB0049
MELO3C025530	Silver-seed gourd	carmeB1006
MELO3C025530	Cucumber (Chinese Long) v3	cucmeB014
MELO3C025530	Cucumber (Chinese Long) v3	cucmeB527
MELO3C025530	Watermelon (97103) v2	mewmbB144
MELO3C025530	Wax gourd	mewgoB167
MELO3C025530	Cucumber (Gy14) v1	cgymeB326
MELO3C025530	Cucurbita maxima (Rimu)	cmameB199
MELO3C025530	Cucurbita maxima (Rimu)	cmameB366
MELO3C025530	Cucurbita moschata (Rifu)	cmomeB186
MELO3C025530	Cucurbita moschata (Rifu)	cmomeB349
MELO3C025530	Wild cucumber (PI 183967)	cpimeB016
MELO3C025530	Cucumber (Chinese Long) v2	cumeB029
MELO3C025530	Watermelon (Charleston Gray)	mewcgB142
MELO3C025530	Watermelon (97103) v1	mewmB168
MELO3C025530	Cucurbita pepo (Zucchini)	cpemeB028
MELO3C025530	Cucurbita pepo (Zucchini)	cpemeB472
MELO3C025530	Bottle gourd (USVL1VR-Ls)	lsimeB181
MELO3C025530	Cucumber (Gy14) v2	cgybmeB014