MELO3C025510 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025510
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Elongation factor 1-alpha
Location	chr9 : 6521526 .. 6522142 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGTCACCTTCGTTCCAACTGGCCTCACTACTGAAGTAAAATCTGTTGAAATGCACCATGAAGCTCTCCAAGAAGCTCTCCCCGGTGACAATGTGGGATTCAACGTGAAGAACGCCGCAATAAAAGATCTCAAACGTGGCTACGTTGCGTCAAATTCCAAAGATGATCCAGCCAAAGAAGCTGCTAGTTTCACTTCACAAGTTATCATCATGAACCATCCATGACAGATTGGAAATGGTTATGCCACTGTTCTTGACTGCCACACCTCTCACATAGCAGTCAAGTTTGGGGAGATTCTAACAAAGATTGATAGAAGATCTGGTAAAGAACTCGAGAAAGAGCCTAAATTCTTGAAAAATGGTGATGCTGGATTTGTTAAGATGATCCCCACTAAGCCTATGGTGGTGGAAACGTTCTCTGAGTATCCACCACTTGGGAGATTTGCTGTTAGAGACATGCGGCAAACAGTGGCTGTTTGTGTGATCAAAAGCGTCGAAAAGAAGGACCCAAGTGGTGCTAAGGTCACAAATACTTCTTAAGTTTGCTGTTTGTTTTAAAAAGAATTTATCTTCTTTCAAAAGTTTCAATATCAACCTAATATTTTAGAAATGTT

mRNA sequence

ATGGTCGTCACCTTCGTTCCAACTGGCCTCACTACTGAAGTAAAATCTGTTGAAATGCACCATGAAGCTCTCCAAGAAGCTCTCCCCGGTGACAATGTGGGATTCAACGTGAAGAACGCCGCAATAAAAGATCTCAAACGTGGCTACGTTGCGTCAAATTCCAAAGATGATCCAGCCAAAGAAGCTGCTAGTTTCACTTCACAAATTGGAAATGGTTATGCCACTGTTCTTGACTGCCACACCTCTCACATAGCAGTCAAGTTTGGGGAGATTCTAACAAAGATTGATAGAAGATCTGGTAAAGAACTCGAGAAAGAGCCTAAATTCTTGAAAAATGGTGATGCTGGATTTGTTAAGATGATCCCCACTAAGCCTATGGTGGTGGAAACGTTCTCTGAGTATCCACCACTTGGGAGATTTGCTGTTAGAGACATGCGGCAAACAGTGGCTGTTTGTGTGATCAAAAGCGTCGAAAAGAAGGACCCAAGTGGTGCTAAGGTCACAAATACTTCTTAAGTTTGCTGTTTGTTTTAAAAAGAATTTATCTTCTTTCAAAAGTTTCAATATCAACCTAATATTTTAGAAATGTT

Coding sequence (CDS)

ATGGTCGTCACCTTCGTTCCAACTGGCCTCACTACTGAAGTAAAATCTGTTGAAATGCACCATGAAGCTCTCCAAGAAGCTCTCCCCGGTGACAATGTGGGATTCAACGTGAAGAACGCCGCAATAAAAGATCTCAAACGTGGCTACGTTGCGTCAAATTCCAAAGATGATCCAGCCAAAGAAGCTGCTAGTTTCACTTCACAAATTGGAAATGGTTATGCCACTGTTCTTGACTGCCACACCTCTCACATAGCAGTCAAGTTTGGGGAGATTCTAACAAAGATTGATAGAAGATCTGGTAAAGAACTCGAGAAAGAGCCTAAATTCTTGAAAAATGGTGATGCTGGATTTGTTAAGATGATCCCCACTAAGCCTATGGTGGTGGAAACGTTCTCTGAGTATCCACCACTTGGGAGATTTGCTGTTAGAGACATGCGGCAAACAGTGGCTGTTTGTGTGATCAAAAGCGTCGAAAAGAAGGACCCAAGTGGTGCTAAGGTCACAAATACTTCTTAA

Protein sequence

MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAKEAASFTSQIGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS*

Homology

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BLAST of MELO3C025510 vs. Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.5e-83
Identity = 159/180 (88.33%), Postives = 161/180 (89.44%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRG VASNSKDDPAK
Sbjct: 264 MVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGIVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFS YPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMIPTKPMVVETFSAYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 443

[Close]

BLAST of MELO3C025510 vs. Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 306.6 bits (784), Expect = 1.7e-82
Identity = 156/180 (86.67%), Postives = 161/180 (89.44%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF P+GLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAASFTSQ         IGNGYA VLDCHTSHIAVKF E++TKIDRRSGKELEKEPKFLK
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIK+VEKKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVEKKDPTGAKVTKAA 443

[Close]

BLAST of MELO3C025510 vs. Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 3.8e-82
Identity = 155/180 (86.11%), Postives = 160/180 (88.89%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVAS SKDDPAK
Sbjct: 264 MVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASGSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAASFTSQ         IGNGYA VLDCHTSHIAVKF E++TKIDRRSGKELEKEPKFLK
Sbjct: 324 EAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKM+PTKPMVVETFS+YPPLGRFAVRDMRQTVAV VIKSVEKKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAA 443

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BLAST of MELO3C025510 vs. Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 155/180 (86.11%), Postives = 160/180 (88.89%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRG+VASNSKDDPAK
Sbjct: 264 MVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
            AASFTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKE+EKEPKFLK
Sbjct: 324 GAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKEIEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIK+V+KKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKNVDKKDPTGAKVTKAA 443

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BLAST of MELO3C025510 vs. Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 154/180 (85.56%), Postives = 160/180 (88.89%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
            AASFT+Q         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 324 GAASFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDMRQTVAV V+K+V+KKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVVKNVDKKDPTGAKVTKAA 443

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BLAST of MELO3C025510 vs. TrEMBL
Match: A0A0A0KNN9_CUCSA (Elongation factor 1-alpha OS=Cucumis sativus GN=Csa_5G495950 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 4.8e-84
Identity = 163/180 (90.56%), Postives = 166/180 (92.22%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 217 MVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 276

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAASFTSQ         IGNGYA VLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK
Sbjct: 277 EAASFTSQVIIMKHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 336

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 337 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 396

[Close]

BLAST of MELO3C025510 vs. TrEMBL
Match: U5DC81_AMBTC (Elongation factor 1-alpha OS=Amborella trichopoda GN=AMTR_s00066p00072310 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.6e-82
Identity = 160/180 (88.89%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRG+VASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 443

[Close]

BLAST of MELO3C025510 vs. TrEMBL
Match: A0A059D5I8_EUCGR (Elongation factor 1-alpha OS=Eucalyptus grandis GN=EUGRSUZ_B02473 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.5e-82
Identity = 159/180 (88.33%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF P+GLTTE+KSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFGPSGLTTEIKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAATFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 443

[Close]

BLAST of MELO3C025510 vs. TrEMBL
Match: B9TLU0_RICCO (Elongation factor 1-alpha, putative OS=Ricinus communis GN=RCOM_2159030 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.5e-82
Identity = 159/180 (88.33%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF P+GLTTE+KSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 110 MVVTFGPSGLTTEIKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 169

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 170 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLK 229

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 230 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 289

[Close]

BLAST of MELO3C025510 vs. TrEMBL
Match: B9RWF4_RICCO (Elongation factor 1-alpha OS=Ricinus communis GN=RCOM_1019090 PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.5e-82
Identity = 159/180 (88.33%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF P+GLTTE+KSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFGPSGLTTEIKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 443

[Close]

BLAST of MELO3C025510 vs. TAIR10
Match: AT1G07920.1 (AT1G07920.1 GTP binding Elongation factor Tu family protein)

HSP 1 Score: 300.8 bits (769), Expect = 5.3e-82
Identity = 153/180 (85.00%), Postives = 158/180 (87.78%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHE+L EALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
            AA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKE+EKEPKFLK
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSV+KKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAA 443

[Close]

BLAST of MELO3C025510 vs. TAIR10
Match: AT1G07930.1 (AT1G07930.1 GTP binding Elongation factor Tu family protein)

HSP 1 Score: 300.8 bits (769), Expect = 5.3e-82
Identity = 153/180 (85.00%), Postives = 158/180 (87.78%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHE+L EALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
            AA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKE+EKEPKFLK
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSV+KKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAA 443

[Close]

BLAST of MELO3C025510 vs. TAIR10
Match: AT1G07940.1 (AT1G07940.1 GTP binding Elongation factor Tu family protein)

HSP 1 Score: 300.8 bits (769), Expect = 5.3e-82
Identity = 153/180 (85.00%), Postives = 158/180 (87.78%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHE+L EALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
            AA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKE+EKEPKFLK
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSV+KKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAA 443

[Close]

BLAST of MELO3C025510 vs. TAIR10
Match: AT5G60390.1 (AT5G60390.1 GTP binding Elongation factor Tu family protein)

HSP 1 Score: 300.8 bits (769), Expect = 5.3e-82
Identity = 153/180 (85.00%), Postives = 158/180 (87.78%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHE+L EALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHESLLEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
            AA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKE+EKEPKFLK
Sbjct: 324 GAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKEIEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAG VKM PTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSV+KKDP+GAKVT  +
Sbjct: 384 NGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKVTKAA 443

[Close]

BLAST of MELO3C025510 vs. TAIR10
Match: AT1G35550.1 (AT1G35550.1 elongation factor Tu C-terminal domain-containing protein)

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-39
Identity = 77/99 (77.78%), Postives = 81/99 (81.82%), Query Frame = 1


Query: 68  QIGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMV 127
           QI NGY  VLDCHTSHIAVKF EILTKID R+G E+EKEPKFLKN +A  + M PTKPMV
Sbjct: 6   QIKNGYTPVLDCHTSHIAVKFSEILTKIDWRTGHEIEKEPKFLKNSEAAIINMTPTKPMV 65

Query: 128 VETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAK 167
           VE +S YPPLGRFA+RDMRQTV V VIKSV KKDPSGAK
Sbjct: 66  VEAYSAYPPLGRFAIRDMRQTVGVGVIKSVVKKDPSGAK 104

[Close]

BLAST of MELO3C025510 vs. NCBI nr
Match: gi|778703141|ref|XP_011655322.1| (PREDICTED: elongation factor 1-alpha-like [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 6.9e-84
Identity = 163/180 (90.56%), Postives = 166/180 (92.22%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAASFTSQ         IGNGYA VLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAASFTSQVIIMKHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 443

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BLAST of MELO3C025510 vs. NCBI nr
Match: gi|700196051|gb|KGN51228.1| (Elongation factor 1-alpha [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 6.9e-84
Identity = 163/180 (90.56%), Postives = 166/180 (92.22%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 217 MVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 276

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAASFTSQ         IGNGYA VLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK
Sbjct: 277 EAASFTSQVIIMKHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 336

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 337 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 396

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BLAST of MELO3C025510 vs. NCBI nr
Match: gi|470143497|ref|XP_004307410.1| (PREDICTED: elongation factor 1-alpha [Fragaria vesca subsp. vesca])

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-82
Identity = 159/180 (88.33%), Postives = 166/180 (92.22%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FT+Q         IGNGYA VLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKM+PTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIK+VEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMLPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPSGAKVTKSA 443

[Close]

BLAST of MELO3C025510 vs. NCBI nr
Match: gi|586779984|ref|XP_006858667.1| (PREDICTED: elongation factor 1-alpha [Amborella trichopoda])

HSP 1 Score: 313.5 bits (802), Expect = 2.2e-82
Identity = 160/180 (88.89%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRG+VASNSKDDPAK
Sbjct: 264 MVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FTSQ         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 443

[Close]

BLAST of MELO3C025510 vs. NCBI nr
Match: gi|1009120877|ref|XP_015877161.1| (PREDICTED: elongation factor 1-alpha [Ziziphus jujuba])

HSP 1 Score: 312.8 bits (800), Expect = 3.8e-82
Identity = 160/180 (88.89%), Postives = 165/180 (91.67%), Query Frame = 1


Query: 1   MVVTFVPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNAAIKDLKRGYVASNSKDDPAK 60
           MVVTF PTGLTTEVKSVEMHHEALQEALPGDNVGFNVKN A+KDLKRGYVASNSKDDPAK
Sbjct: 264 MVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAK 323

Query: 61  EAASFTSQ---------IGNGYATVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLK 120
           EAA+FT+Q         IGNGYA VLDCHTSHIAVKF EILTKIDRRSGKELEKEPKFLK
Sbjct: 324 EAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEILTKIDRRSGKELEKEPKFLK 383

Query: 121 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVCVIKSVEKKDPSGAKVTNTS 172
           NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAV VIKSVEKKDPSGAKVT ++
Sbjct: 384 NGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSA 443

The following BLAST results are available for this feature:

BLAST of MELO3C025510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF1A_MANES	4.5e-83	88.33	Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1	[more]
EF1A_ORYSJ	1.7e-82	86.67	Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2	[more]
EF1A_MAIZE	3.8e-82	86.11	Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1	[more]
EF1A_TOBAC	1.1e-81	86.11	Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1	[more]
EF1A_SOLLC	1.4e-81	85.56	Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1	[more]

BLAST of MELO3C025510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNN9_CUCSA	4.8e-84	90.56	Elongation factor 1-alpha OS=Cucumis sativus GN=Csa_5G495950 PE=4 SV=1	[more]
U5DC81_AMBTC	1.6e-82	88.89	Elongation factor 1-alpha OS=Amborella trichopoda GN=AMTR_s00066p00072310 PE=3 S...	[more]
A0A059D5I8_EUCGR	4.5e-82	88.33	Elongation factor 1-alpha OS=Eucalyptus grandis GN=EUGRSUZ_B02473 PE=3 SV=1	[more]
B9TLU0_RICCO	4.5e-82	88.33	Elongation factor 1-alpha, putative OS=Ricinus communis GN=RCOM_2159030 PE=4 SV=...	[more]
B9RWF4_RICCO	4.5e-82	88.33	Elongation factor 1-alpha OS=Ricinus communis GN=RCOM_1019090 PE=3 SV=1	[more]

BLAST of MELO3C025510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07920.1	5.3e-82	85.00	GTP binding Elongation factor Tu family protein	[more]
AT1G07930.1	5.3e-82	85.00	GTP binding Elongation factor Tu family protein	[more]
AT1G07940.1	5.3e-82	85.00	GTP binding Elongation factor Tu family protein	[more]
AT5G60390.1	5.3e-82	85.00	GTP binding Elongation factor Tu family protein	[more]
AT1G35550.1	4.2e-39	77.78	elongation factor Tu C-terminal domain-containing protein	[more]

BLAST of MELO3C025510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778703141\|ref\|XP_011655322.1\|	6.9e-84	90.56	PREDICTED: elongation factor 1-alpha-like [Cucumis sativus]	[more]
gi\|700196051\|gb\|KGN51228.1\|	6.9e-84	90.56	Elongation factor 1-alpha [Cucumis sativus]	[more]
gi\|470143497\|ref\|XP_004307410.1\|	1.3e-82	88.33	PREDICTED: elongation factor 1-alpha [Fragaria vesca subsp. vesca]	[more]
gi\|586779984\|ref\|XP_006858667.1\|	2.2e-82	88.89	PREDICTED: elongation factor 1-alpha [Amborella trichopoda]	[more]
gi\|1009120877\|ref\|XP_015877161.1\|	3.8e-82	88.89	PREDICTED: elongation factor 1-alpha [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004160	Transl_elong_EFTu/EF1A_C
IPR004161	EFTu-like_2
IPR009000	Transl_B-barrel_sf
IPR009001	Transl_elong_EF1A/Init_IF2_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0006790	sulfur compound metabolic process
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0004781	sulfate adenylyltransferase (ATP) activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0016779	nucleotidyltransferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU62307	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025510T1	MELO3C025510T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU62307	MU62307	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004160	Translation elongation factor EFTu/EF1A, C-terminal	PFAM	PF03143	GTP_EFTU_D3	coord: 66..157 score: 3.5
IPR004161	Translation elongation factor EFTu-like, domain 2	PFAM	PF03144	GTP_EFTU_D2	coord: 6..50 score: 3.
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 2..88 score: 3.77
IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	unknown	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	coord: 66..157 score: 1.17
None	No IPR available	GENE3D	G3DSA:2.40.30.10		coord: 1..55 score: 4.5E-20coord: 66..158 score: 2.5
None	No IPR available	PANTHER	PTHR23115	TRANSLATION FACTOR	coord: 1..168 score: 1.3E
None	No IPR available	PANTHER	PTHR23115:SF157	SUBFAMILY NOT NAMED	coord: 1..168 score: 1.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C025510	CmaCh15G004380	Cucurbita maxima (Rimu)	cmameB251

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025510	Watermelon (97103) v2	mewmbB038
MELO3C025510	Wax gourd	mewgoB030
MELO3C025510	Cucumber (Gy14) v1	cgymeB460
MELO3C025510	Cucurbita maxima (Rimu)	cmameB634
MELO3C025510	Cucurbita moschata (Rifu)	cmomeB239
MELO3C025510	Cucurbita moschata (Rifu)	cmomeB624
MELO3C025510	Wild cucumber (PI 183967)	cpimeB350
MELO3C025510	Cucumber (Chinese Long) v2	cumeB348
MELO3C025510	Watermelon (Charleston Gray)	mewcgB002
MELO3C025510	Watermelon (97103) v1	mewmB003
MELO3C025510	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C025510	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C025510	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C025510	Cucumber (Gy14) v2	cgybmeB300
MELO3C025510	Silver-seed gourd	carmeB0260
MELO3C025510	Silver-seed gourd	carmeB0682
MELO3C025510	Cucumber (Chinese Long) v3	cucmeB359