MELO3C025457 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025457
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-directed DNA polymerase, putative
Location	chr9 : 5657080 .. 5657570 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGCAAACCAATGATCAGGTTCAAGCTGTTCGTCAAGACGTTGAAGATTTGAAAGATCAATTGGCAAAAATCCTAGAATTGCTCACCACTGGAAGAGGAAAGAGTGTTACAGGGGCTTCATCACAAGTGGAAGTGAATTTGAATCAGGTACTAGAGGACATGTCTGCATACCCCTCGGATTTCACTCCTCAAAAGTCGTCTAGTCCATGCATGGTGGATAGGACATATCCTACATCATTTTCCGCGCCAAATCCTAACACAACCACCCAACAAGCAGCCCATGCGAGCAATCCCACATCTACTCCAATTATGGAAGGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGAAGACTGGAATTTCTAGAAGAAAGACTGTGCGCCATTGAAGGTGCAGACATGTATGAGAGTATCGACGTAACACAACTATGTTTGATATCAGATGTGGTGATCCCTCCCAAATTCAGGATTCCAGATTTTGA

mRNA sequence

ATGGATGAGCAAACCAATGATCAGGTTCAAGCTGTTCGTCAAGACGTTGAAGATTTGAAAGATCAATTGGCAAAAATCCTAGAATTGCTCACCACTGGAAGAGGAAAGAGTGTTACAGGGGCTTCATCACAAGTGGAAGTGAATTTGAATCAGGTACTAGAGGACATGTCTGCATACCCCTCGGATTTCACTCCTCAAAAGTCGTCTAGTCCATGCATGGTGGATAGGACATATCCTACATCATTTTCCGCGCCAAATCCTAACACAACCACCCAACAAGCAGCCCATGCGAGCAATCCCACATCTACTCCAATTATGGAAGGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGAAGACTGGAATTTCTAGAAGAAAGACTGTGCGCCATTGAAGGTGCAGACATATGTGGTGATCCCTCCCAAATTCAGGATTCCAGATTTTGA

Coding sequence (CDS)

ATGGATGAGCAAACCAATGATCAGGTTCAAGCTGTTCGTCAAGACGTTGAAGATTTGAAAGATCAATTGGCAAAAATCCTAGAATTGCTCACCACTGGAAGAGGAAAGAGTGTTACAGGGGCTTCATCACAAGTGGAAGTGAATTTGAATCAGGTACTAGAGGACATGTCTGCATACCCCTCGGATTTCACTCCTCAAAAGTCGTCTAGTCCATGCATGGTGGATAGGACATATCCTACATCATTTTCCGCGCCAAATCCTAACACAACCACCCAACAAGCAGCCCATGCGAGCAATCCCACATCTACTCCAATTATGGAAGGTGGTAAGAAAATTTCAGAAGAGCAGGGTAGTAGAAGAAGACTGGAATTTCTAGAAGAAAGACTGTGCGCCATTGAAGGTGCAGACATATGTGGTGATCCCTCCCAAATTCAGGATTCCAGATTTTGA

Protein sequence

MDEQTNDQVQAVRQDVEDLKDQLAKILELLTTGRGKSVTGASSQVEVNLNQVLEDMSAYPSDFTPQKSSSPCMVDRTYPTSFSAPNPNTTTQQAAHASNPTSTPIMEGGKKISEEQGSRRRLEFLEERLCAIEGADICGDPSQIQDSRF*

Homology

[Close]

BLAST of MELO3C025457 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 224.6 bits (571), Expect = 1.2e-55
Identity = 114/137 (83.21%), Postives = 121/137 (88.32%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEDLKDQLAKILELLTTGRGKSVTGASSQVEVNLNQVLEDMSAYP 60
           MDEQTNDQVQAVRQDVE LKDQLAKILELLTTGRGKSV G SSQVEV+LNQVLED+ AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61  SDFTPQKSSSPCMVDRTYPTSFSAPNPNTTTQQAAHASNPTSTPIMEGGKKISEEQGSRR 120
             FTPQ+ SSP MVDRTYPTSF APNPNTTTQQAAH S+  STPI + GKKISEEQGSR+
Sbjct: 61  PSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQQAAHVSDLISTPITKSGKKISEEQGSRK 120

Query: 121 RLEFLEERLCAIEGADI 138
           RLEFLEERLC IEG D+
Sbjct: 121 RLEFLEERLCTIEGIDM 137

[Close]

BLAST of MELO3C025457 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 3.6e-52
Identity = 112/139 (80.58%), Postives = 120/139 (86.33%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEDLKDQLAKILELLTTGRGKSVTGASSQVEVNLNQVLEDMSAYP 60
           MDEQ+NDQVQAVRQDVE LKDQLAKILELLTTGRGKSV G SSQVEV+LNQVLEDM+ YP
Sbjct: 1   MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61  SDFTPQKSSSPCMVDRTYPTSFSAPNPNTTTQQAAHASNPTSTPIMEGGKKISEEQGSRR 120
             FTPQ+SSSP +VDRTYPT     NPNTTTQQA H S+P ST I EGGKKISEEQGSRR
Sbjct: 61  PGFTPQQSSSPRIVDRTYPTQ----NPNTTTQQAVHVSDPISTLITEGGKKISEEQGSRR 120

Query: 121 RLEFLEERLCAIEGADICG 140
           R+EFLEERL AIEGAD+ G
Sbjct: 121 RMEFLEERLRAIEGADMYG 135

[Close]

BLAST of MELO3C025457 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 2.3e-46
Identity = 104/139 (74.82%), Postives = 112/139 (80.58%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEDLKDQLAKILELLTTGRGKSVTGASSQVEVNLNQVLEDMSAYP 60
           MDEQTNDQVQAVRQDVE LKDQLAKILELLT GRGKSVTG SSQVEV+LNQVLEDM AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELLTIGRGKSVTGISSQVEVDLNQVLEDMPAYP 60

Query: 61  SDFTPQKSSSPCMVDRTYPTSFSAPNPNTTTQQAAHASNPTSTPIMEGGKKISEEQGSRR 120
             FTPQ+SSSP M       ++S  NPN  TQQ  H S+P STPI E GKKI EEQGSR+
Sbjct: 61  PGFTPQRSSSPRM-------TYSTQNPNPITQQENHVSDPMSTPITESGKKILEEQGSRK 120

Query: 121 RLEFLEERLCAIEGADICG 140
           RLEF+EERL AIEGAD+ G
Sbjct: 121 RLEFVEERLRAIEGADMYG 132

[Close]

BLAST of MELO3C025457 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 189.9 bits (481), Expect = 3.3e-45
Identity = 104/139 (74.82%), Postives = 110/139 (79.14%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEDLKDQLAKILELLTTGRGKSVTGASSQVEVNLNQVLEDMSAYP 60
           MDEQTNDQVQAVRQDVE LKDQLAKILEL TTGR KSV G SSQVEV+LNQVLEDM AYP
Sbjct: 1   MDEQTNDQVQAVRQDVEGLKDQLAKILELFTTGRRKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61  SDFTPQKSSSPCMVDRTYPTSFSAPNPNTTTQQAAHASNPTSTPIMEGGKKISEEQGSRR 120
             FTPQ+SSSP M   TYPT     NPN  TQQ  H S+P STPI + GKKISEEQ SR+
Sbjct: 61  IGFTPQRSSSPRM---TYPTQ----NPNPITQQTDHVSDPMSTPITKSGKKISEEQSSRK 120

Query: 121 RLEFLEERLCAIEGADICG 140
           RLEFLEERL  IEGAD+ G
Sbjct: 121 RLEFLEERLRVIEGADMYG 132

[Close]

BLAST of MELO3C025457 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 179.1 bits (453), Expect = 5.7e-42
Identity = 99/139 (71.22%), Postives = 105/139 (75.54%), Query Frame = 1


Query: 1   MDEQTNDQVQAVRQDVEDLKDQLAKILELLTTGRGKSVTGASSQVEVNLNQVLEDMSAYP 60
           MDEQTNDQVQAV QDVE L+DQL KILELLTTGRGK+V G SSQVEV+LNQVLEDMSAY 
Sbjct: 1   MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61  SDFTPQKSSSPCMVDRTYPTSFSAPNPNTTTQQAAHASNPTSTPIMEGGKKISEEQGSRR 120
             FTPQ+SSSP MVDRTYPTSF  PNPNTTTQQA +                    GSRR
Sbjct: 61  PGFTPQRSSSPRMVDRTYPTSFPMPNPNTTTQQAVY--------------------GSRR 119

Query: 121 RLEFLEERLCAIEGADICG 140
           RLEFLEERL AIEGAD+ G
Sbjct: 121 RLEFLEERLRAIEGADMYG 119

The following BLAST results are available for this feature:

BLAST of MELO3C025457 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102853\|ref\|XP_008452348.1\|	1.2e-55	83.21	PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo]	[more]
gi\|659114599\|ref\|XP_008457136.1\|	3.6e-52	80.58	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me...	[more]
gi\|659093710\|ref\|XP_008447676.1\|	2.3e-46	74.82	PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo]	[more]
gi\|659130442\|ref\|XP_008465174.1\|	3.3e-45	74.82	PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo]	[more]
gi\|659122237\|ref\|XP_008461036.1\|	5.7e-42	71.22	PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025457T1	MELO3C025457T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 2..29 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025457	Silver-seed gourd	carmeB0260
MELO3C025457	Silver-seed gourd	carmeB0682
MELO3C025457	Cucumber (Chinese Long) v3	cucmeB269
MELO3C025457	Cucumber (Chinese Long) v3	cucmeB359
MELO3C025457	Cucumber (Chinese Long) v3	cucmeB365
MELO3C025457	Watermelon (97103) v2	mewmbB021
MELO3C025457	Watermelon (97103) v2	mewmbB038
MELO3C025457	Wax gourd	mewgoB030
MELO3C025457	Wax gourd	mewgoB048
MELO3C025457	Melon (DHL92) v3.5.1	memeB007
MELO3C025457	Melon (DHL92) v3.5.1	memeB023
MELO3C025457	Cucumber (Gy14) v1	cgymeB006
MELO3C025457	Cucumber (Gy14) v1	cgymeB058
MELO3C025457	Cucumber (Gy14) v1	cgymeB289
MELO3C025457	Cucurbita maxima (Rimu)	cmameB251
MELO3C025457	Cucurbita maxima (Rimu)	cmameB631
MELO3C025457	Cucurbita maxima (Rimu)	cmameB634
MELO3C025457	Cucurbita moschata (Rifu)	cmomeB239
MELO3C025457	Cucurbita moschata (Rifu)	cmomeB619
MELO3C025457	Cucurbita moschata (Rifu)	cmomeB622
MELO3C025457	Cucurbita moschata (Rifu)	cmomeB624
MELO3C025457	Cucurbita moschata (Rifu)	cmomeB766
MELO3C025457	Wild cucumber (PI 183967)	cpimeB263
MELO3C025457	Wild cucumber (PI 183967)	cpimeB350
MELO3C025457	Wild cucumber (PI 183967)	cpimeB357
MELO3C025457	Cucumber (Chinese Long) v2	cumeB348
MELO3C025457	Cucumber (Chinese Long) v2	cumeB354
MELO3C025457	Watermelon (Charleston Gray)	mewcgB002
MELO3C025457	Watermelon (Charleston Gray)	mewcgB024
MELO3C025457	Watermelon (97103) v1	mewmB003
MELO3C025457	Watermelon (97103) v1	mewmB016
MELO3C025457	Watermelon (97103) v1	mewmB035
MELO3C025457	Cucurbita pepo (Zucchini)	cpemeB155
MELO3C025457	Cucurbita pepo (Zucchini)	cpemeB354
MELO3C025457	Cucurbita pepo (Zucchini)	cpemeB356
MELO3C025457	Cucurbita pepo (Zucchini)	cpemeB358
MELO3C025457	Bottle gourd (USVL1VR-Ls)	lsimeB121
MELO3C025457	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C025457	Bottle gourd (USVL1VR-Ls)	lsimeB279
MELO3C025457	Cucumber (Gy14) v2	cgybmeB231
MELO3C025457	Cucumber (Gy14) v2	cgybmeB300
MELO3C025457	Cucumber (Gy14) v2	cgybmeB307