MELO3C025356 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025356
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Peroxiredoxin
Location	chr2 : 19137355 .. 19137566 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCTTCCGTACAAAATCCCCTTCCCACTAGATGCCGCCGGCGATGCATCCAAATCAAAGCCGGCTCCGGTTTCCGTTGGGGATACGTTGCCGGACGGGGCATCAGCCTACTACTTCGACGAGGACTATAAGCTCCCGCAAGAATCTGTACACTTCCTCGCCACCGGCAAAAAGGTCGTTCTCTTTGAAGCACCCCGTTTCTTCTCCGACTAA

mRNA sequence

GCCTTCCGTACAAAATCCCCTTCCCACTAGATGCCGCCGGCGATGCATCCAAATCAAAGCCGGCTCCGGTTTCCGTTGGGGATACGTTGCCGGACGGGGCATCAGCCTACTACTTCGACGAGGACTATAAGCTCCCGCAAGAATCTGTACACTTCCTCGCCACCGGCAAAAAGGTCGTTCTCTTTGAAGCACCCCGTTTCTTCTCCGACTAA

Coding sequence (CDS)

GCCTTCCGTACAAAATCCCCTTCCCACTAGATGCCGCCGGCGATGCATCCAAATCAAAGCCGGCTCCGGTTTCCGTTGGGGATACGTTGCCGGACGGGGCATCAGCCTACTACTTCGACGAGGACTATAAGCTCCCGCAAGAATCTGTACACTTCCTCGCCACCGGCAAAAAGGTCGTTCTCTTTGAAGCACCCCGTTTCTTCTCCGACTAA

Protein sequence

LPYKIPFPLDAAGDASKSKPAPVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFSD*

Homology

[Close]

BLAST of MELO3C025356 vs. Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.6e-07
Identity = 30/48 (62.50%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          APV+VGDTLPDG   ++  ED KL Q SVH LA GKKVVLF  P  F+
Sbjct: 2  APVAVGDTLPDGQLGWFDGED-KLQQVSVHGLAAGKKVVLFGVPGAFT 48

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BLAST of MELO3C025356 vs. Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.3e-06
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          AP++VGD +PDG  ++ FDE+ +L   SVH LA GKKV+LF  P  F+
Sbjct: 2  APIAVGDVVPDGTISF-FDENDQLQTASVHSLAAGKKVILFGVPGAFT 48

[Close]

BLAST of MELO3C025356 vs. Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.9e-06
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFF 68
          AP+ VGD +PDG S  +FD+D +L   SVH LA GKKV+LF  P  F
Sbjct: 2  APIDVGDFVPDG-SISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAF 47

[Close]

BLAST of MELO3C025356 vs. TrEMBL
Match: A0A0A0M3L3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696490 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-06
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          AP++VGDTLPDG  AY FD+D +L Q S+H LA+GKKVVLF  P  F+
Sbjct: 2  APIAVGDTLPDGTLAY-FDQDDQLQQASMHSLASGKKVVLFGVPGAFT 48

[Close]

BLAST of MELO3C025356 vs. TAIR10
Match: AT1G65980.1 (AT1G65980.1 thioredoxin-dependent peroxidase 1)

HSP 1 Score: 51.2 bits (121), Expect = 3.0e-07
Identity = 25/48 (52.08%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          AP++VGD +PDG  ++ FDE+ +L   SVH LA GKKV+LF  P  F+
Sbjct: 2  APIAVGDVVPDGTISF-FDENDQLQTASVHSLAAGKKVILFGVPGAFT 48

[Close]

BLAST of MELO3C025356 vs. TAIR10
Match: AT1G65990.1 (AT1G65990.1 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein)

HSP 1 Score: 50.8 bits (120), Expect = 3.9e-07
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFF 68
          AP+ VGD +PDG S  +FD+D +L   SVH LA GKKV+LF  P  F
Sbjct: 2  APIDVGDFVPDG-SISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAF 47

[Close]

BLAST of MELO3C025356 vs. TAIR10
Match: AT1G65970.1 (AT1G65970.1 thioredoxin-dependent peroxidase 2)

HSP 1 Score: 50.1 bits (118), Expect = 6.6e-07
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          AP++VGD +PDG  ++ FDE+ +L   SVH +A GKKV+LF  P  F+
Sbjct: 2  APITVGDVVPDGTISF-FDENDQLQTVSVHSIAAGKKVILFGVPGAFT 48

[Close]

BLAST of MELO3C025356 vs. TAIR10
Match: AT1G60740.1 (AT1G60740.1 Thioredoxin superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 6.6e-07
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          AP++VGD +PDG  ++ FDE+ +L   SVH +A GKKV+LF  P  F+
Sbjct: 2  APITVGDVVPDGTISF-FDENDQLQTVSVHSIAAGKKVILFGVPGAFT 48

[Close]

BLAST of MELO3C025356 vs. NCBI nr
Match: gi|659125546|ref|XP_008462740.1| (PREDICTED: peroxiredoxin-2B-like [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          AP++VGDTLPDG  AY FDE+ +L Q S+H LA GKKVVLF  P  F+
Sbjct: 2  APIAVGDTLPDGMVAY-FDEEDQLQQSSIHSLAAGKKVVLFGVPGAFT 48

[Close]

BLAST of MELO3C025356 vs. NCBI nr
Match: gi|449449525|ref|XP_004142515.1| (PREDICTED: peroxiredoxin-2B-like [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1


Query: 21 APVSVGDTLPDGASAYYFDEDYKLPQESVHFLATGKKVVLFEAPRFFS 69
          AP++VGDTLPDG  AY FD+D +L Q S+H LA+GKKVVLF  P  F+
Sbjct: 2  APIAVGDTLPDGTLAY-FDQDDQLQQASMHSLASGKKVVLFGVPGAFT 48

The following BLAST results are available for this feature:

BLAST of MELO3C025356 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRX2C_ORYSJ	3.6e-07	62.50	Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1	[more]
PRX2B_ARATH	5.3e-06	52.08	Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1	[more]
PRX2A_ARATH	6.9e-06	55.32	Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1	[more]

BLAST of MELO3C025356 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3L3_CUCSA	1.6e-06	62.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696490 PE=4 SV=1	[more]

BLAST of MELO3C025356 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65980.1	3.0e-07	52.08	thioredoxin-dependent peroxidase 1	[more]
AT1G65990.1	3.9e-07	55.32	type 2 peroxiredoxin-related / thiol specific antioxidant / mal alle...	[more]
AT1G65970.1	6.6e-07	50.00	thioredoxin-dependent peroxidase 2	[more]
AT1G60740.1	6.6e-07	50.00	Thioredoxin superfamily protein	[more]

BLAST of MELO3C025356 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125546\|ref\|XP_008462740.1\|	2.4e-06	62.50	PREDICTED: peroxiredoxin-2B-like [Cucumis melo]	[more]
gi\|449449525\|ref\|XP_004142515.1\|	2.4e-06	62.50	PREDICTED: peroxiredoxin-2B-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012336	Thioredoxin-like_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016209	antioxidant activity
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025356T1	MELO3C025356T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 16..67 score: 8.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025356	Cucurbita pepo (Zucchini)	cpemeB082
MELO3C025356	Cucurbita pepo (Zucchini)	cpemeB334
MELO3C025356	Cucurbita pepo (Zucchini)	cpemeB621
MELO3C025356	Cucurbita pepo (Zucchini)	cpemeB751
MELO3C025356	Bottle gourd (USVL1VR-Ls)	lsimeB102
MELO3C025356	Bottle gourd (USVL1VR-Ls)	lsimeB403
MELO3C025356	Cucumber (Gy14) v2	cgybmeB045
MELO3C025356	Cucumber (Gy14) v2	cgybmeB056
MELO3C025356	Cucumber (Gy14) v2	cgybmeB095
MELO3C025356	Silver-seed gourd	carmeB0035
MELO3C025356	Silver-seed gourd	carmeB0131
MELO3C025356	Silver-seed gourd	carmeB0572
MELO3C025356	Cucumber (Chinese Long) v3	cucmeB049
MELO3C025356	Cucumber (Chinese Long) v3	cucmeB060
MELO3C025356	Cucumber (Chinese Long) v3	cucmeB116
MELO3C025356	Watermelon (97103) v2	mewmbB239
MELO3C025356	Watermelon (97103) v2	mewmbB262
MELO3C025356	Watermelon (97103) v2	mewmbB273
MELO3C025356	Wax gourd	mewgoB273
MELO3C025356	Wax gourd	mewgoB290
MELO3C025356	Melon (DHL92) v3.5.1	memeB104
MELO3C025356	Cucurbita moschata (Rifu)	cmomeB098
MELO3C025356	Cucumber (Gy14) v1	cgymeB169
MELO3C025356	Cucurbita maxima (Rimu)	cmameB058
MELO3C025356	Cucurbita maxima (Rimu)	cmameB105
MELO3C025356	Cucurbita maxima (Rimu)	cmameB719
MELO3C025356	Cucurbita moschata (Rifu)	cmomeB049
MELO3C025356	Cucurbita moschata (Rifu)	cmomeB140
MELO3C025356	Cucurbita moschata (Rifu)	cmomeB710
MELO3C025356	Wild cucumber (PI 183967)	cpimeB110
MELO3C025356	Cucumber (Chinese Long) v2	cumeB003
MELO3C025356	Watermelon (Charleston Gray)	mewcgB232
MELO3C025356	Watermelon (Charleston Gray)	mewcgB255
MELO3C025356	Watermelon (97103) v1	mewmB284
MELO3C025356	Watermelon (97103) v1	mewmB290