MELO3C025350 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025350
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr2 : 19081853 .. 19082162 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCACACACCAAAGGTTGGTGGATTGATACTGATGCTACTAGACACATTAGTAAGGACAAATCATTGTTCATTACATATGAAAAGCAAGATGGCAGTGATAAGTTGTACATGAGAAATGCTTCAACTGCCTTTGTGGAAGGCAAAGGCAAGATCCTACTGAAATGGACTTCTGGAAAGATACTTACCCTCAATGATGTGTGGGATGTGCCAAAGATTCGAAAGAATCTAGTGTTAGAAACTCTACTTAATAAAAATGGGCCCAAGCTTGTATTTGAGTCGAATAAATTTATTTTGATAAAGAGAG

mRNA sequence

ATGGATTCACACACCAAAGGTTGGTGGATTGATACTGATGCTACTAGACACATTAGTAAGGACAAATCATTGTTCATTACATATGAAAAGCAAGATGGCAGTGATAAGTTGTACATGAGAAATGCTTCAACTGCCTTTGTGGAAGGCAAAGGCAAGATCCTACTGAAATGGACTTCTGGAAAGATACTTACCCTCAATGATGTGTGGGATGTGCCAAAGATTCGAAAGAATCTAGTGTTAGAAACTCTACTTAATAAAAATGGGCCCAAGCTTGTATTTGAGTCGAATAAATTTATTTTGATAAAGAGAG

Coding sequence (CDS)

ATGGATTCACACACCAAAGGTTGGTGGATTGATACTGATGCTACTAGACACATTAGTAAGGACAAATCATTGTTCATTACATATGAAAAGCAAGATGGCAGTGATAAGTTGTACATGAGAAATGCTTCAACTGCCTTTGTGGAAGGCAAAGGCAAGATCCTACTGAAATGGACTTCTGGAAAGATACTTACCCTCAATGATGTGTGGGATGTGCCAAAGATTCGAAAGAATCTAGTGTTAGAAACTCTACTTAATAAAAATGGGCCCAAGCTTGTATTTGAGTCGAATAAATTTATTTTGATAAAGAGAG

Protein sequence

MDSHTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKILTLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIKR
Homology
[Close]
BLAST of MELO3C025350 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.8e-06
Identity = 34/96 (35.42%), Postives = 49/96 (51.04%), Query Frame = 1 

Query: 8   WWIDTDATRHISKDKSLFITYEKQD-GSDKLYMRNASTAFVEGKGKILLKWTSGKILTLN 67
           W +DT A+ H +  + LF  Y   D G+ K  M N S + + G G I +K   G  L L 
Sbjct: 294 WVVDTAASHHATPVRDLFCRYVAGDFGTVK--MGNTSYSKIAGIGDICIKTNVGCTLVLK 353

Query: 68  DVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           DV  VP +R NL+    L+++G +  F + K+ L K
Sbjct: 354 DVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTK 387

[Close]
BLAST of MELO3C025350 vs. TrEMBL
Match: A5B994_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023328 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 57/99 (57.58%), Postives = 77/99 (77.78%), Query Frame = 1 

Query: 4   HTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKIL 63
           +TK WW+DT ATRHI  +K +F TY+  + +++L+M  +S++ VEG+GK++LK TSGK L
Sbjct: 233 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKVEGRGKVILKMTSGKEL 292

Query: 64  TLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           TLNDV  VP IRKNLV  +LL+KNG KLVF S+KF+L K
Sbjct: 293 TLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTK 331

[Close]
BLAST of MELO3C025350 vs. TrEMBL
Match: A5CBN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016964 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.7e-23
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 1 

Query: 4   HTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKIL 63
           +TK WW+DT ATRHI  +K +F TY+  + +++L+M N+S++ +EG+GK++LK TSGK L
Sbjct: 459 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKEL 518

Query: 64  TLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           TLNDV  VP I KNLV  +LL+KNG KLVF S+KF+L K
Sbjct: 519 TLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTK 557

[Close]
BLAST of MELO3C025350 vs. TrEMBL
Match: A5AMN2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.4e-23
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 3   SHTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKI 62
           S+ K WWIDT ATRH+  DK +F T+E  +  +K++M N++T+ ++G+GK++LK TSGK 
Sbjct: 331 SNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKE 390

Query: 63  LTLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           LTL +V  VP+IRKNLV  +LLN +G +LVFESNK +L K
Sbjct: 391 LTLTNVLYVPEIRKNLVFGSLLNNHGFRLVFESNKVVLSK 430

[Close]
BLAST of MELO3C025350 vs. TrEMBL
Match: Q94FM0_CITPA (Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.4e-22
Identity = 54/100 (54.00%), Postives = 75/100 (75.00%), Query Frame = 1 

Query: 3   SHTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKI 62
           S+ + WWIDT ATRH+  DK LF ++E     +KL+M N++T+ +EG+GK+ LK TSGK 
Sbjct: 320 SNPREWWIDTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMTSGKE 379

Query: 63  LTLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           LTLN+V  VP+IRKNLV  +LLNK+G ++VFES+  +L K
Sbjct: 380 LTLNNVLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSK 419

[Close]
BLAST of MELO3C025350 vs. TrEMBL
Match: A5AEN5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.4e-22
Identity = 53/100 (53.00%), Postives = 75/100 (75.00%), Query Frame = 1 

Query: 3   SHTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKI 62
           S+ K WWIDT ATRH+  DK +F T+E  +  +K++M N++T+ ++G+GK++LK TSGK 
Sbjct: 331 SNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSEIKGQGKVILKMTSGKE 390

Query: 63  LTLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           LTL +V  VP+IRKNLV  +LLN +G +LVF SNK +L K
Sbjct: 391 LTLTNVLYVPEIRKNLVSGSLLNNHGFRLVFXSNKVVLSK 430

[Close]
BLAST of MELO3C025350 vs. NCBI nr
Match: gi|147863092|emb|CAN82978.1| (hypothetical protein VITISV_023328 [Vitis vinifera])

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-23
Identity = 57/99 (57.58%), Postives = 77/99 (77.78%), Query Frame = 1 

Query: 4   HTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKIL 63
           +TK WW+DT ATRHI  +K +F TY+  + +++L+M  +S++ VEG+GK++LK TSGK L
Sbjct: 233 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGYSSSSKVEGRGKVILKMTSGKEL 292

Query: 64  TLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           TLNDV  VP IRKNLV  +LL+KNG KLVF S+KF+L K
Sbjct: 293 TLNDVLHVPDIRKNLVSRSLLSKNGFKLVFVSDKFVLTK 331

[Close]
BLAST of MELO3C025350 vs. NCBI nr
Match: gi|147828230|emb|CAN66576.1| (hypothetical protein VITISV_016964 [Vitis vinifera])

HSP 1 Score: 115.5 bits (288), Expect = 5.3e-23
Identity = 56/99 (56.57%), Postives = 77/99 (77.78%), Query Frame = 1 

Query: 4   HTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKIL 63
           +TK WW+DT ATRHI  +K +F TY+  + +++L+M N+S++ +EG+GK++LK TSGK L
Sbjct: 459 NTKEWWVDTGATRHICSNKWMFSTYKPVEQNEELFMGNSSSSKIEGRGKVILKMTSGKEL 518

Query: 64  TLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           TLNDV  VP I KNLV  +LL+KNG KLVF S+KF+L K
Sbjct: 519 TLNDVLHVPDICKNLVSGSLLSKNGFKLVFVSDKFVLTK 557

[Close]
BLAST of MELO3C025350 vs. NCBI nr
Match: gi|985465997|ref|XP_015389484.1| (PREDICTED: uncharacterized protein LOC107178620 [Citrus sinensis])

HSP 1 Score: 115.2 bits (287), Expect = 7.0e-23
Identity = 54/100 (54.00%), Postives = 77/100 (77.00%), Query Frame = 1 

Query: 3   SHTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKI 62
           S+ + WWIDT ATRH+  DK LF ++E     +KL+M N++T+ +EG+GK++LK TSGK 
Sbjct: 165 SNPREWWIDTGATRHVCSDKGLFTSFEAVSNGEKLFMGNSATSEIEGQGKVILKMTSGKE 224

Query: 63  LTLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           LTLN+V  VP+IRKNLV  +LLNK+G ++VFES++ +L K
Sbjct: 225 LTLNNVLYVPEIRKNLVSGSLLNKHGFRMVFESDRVVLSK 264

[Close]
BLAST of MELO3C025350 vs. NCBI nr
Match: gi|147818102|emb|CAN73567.1| (hypothetical protein VITISV_003451 [Vitis vinifera])

HSP 1 Score: 114.8 bits (286), Expect = 9.1e-23
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 1 

Query: 3   SHTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKI 62
           S+ K WWIDT ATRH+  DK +F T+E  +  +K++M N++T+ ++G+GK++LK TSGK 
Sbjct: 331 SNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSTTSEIKGQGKVILKMTSGKE 390

Query: 63  LTLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           LTL +V  VP+IRKNLV  +LLN +G +LVFESNK +L K
Sbjct: 391 LTLTNVLYVPEIRKNLVFGSLLNNHGFRLVFESNKVVLSK 430

[Close]
BLAST of MELO3C025350 vs. NCBI nr
Match: gi|14586969|gb|AAK70407.1|AF369930_2 (pol polyprotein [Citrus x paradisi])

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-22
Identity = 54/100 (54.00%), Postives = 75/100 (75.00%), Query Frame = 1 

Query: 3   SHTKGWWIDTDATRHISKDKSLFITYEKQDGSDKLYMRNASTAFVEGKGKILLKWTSGKI 62
           S+ + WWIDT ATRH+  DK LF ++E     +KL+M N++T+ +EG+GK+ LK TSGK 
Sbjct: 320 SNPREWWIDTGATRHVCSDKGLFTSFEAASNREKLFMGNSATSEIEGQGKVALKMTSGKE 379

Query: 63  LTLNDVWDVPKIRKNLVLETLLNKNGPKLVFESNKFILIK 103
           LTLN+V  VP+IRKNLV  +LLNK+G ++VFES+  +L K
Sbjct: 380 LTLNNVLYVPEIRKNLVSGSLLNKHGFRMVFESDMVVLSK 419

The following BLAST results are available for this feature:
BLAST of MELO3C025350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC7.8e-0635.42Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of MELO3C025350 vs. TrEMBL
Match NameE-valueIdentityDescription
A5B994_VITVI1.7e-2357.58Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023328 PE=4 SV=1[more]
A5CBN2_VITVI3.7e-2356.57Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016964 PE=4 SV=1[more]
A5AMN2_VITVI6.4e-2354.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003451 PE=4 SV=1[more]
Q94FM0_CITPA2.4e-2254.00Pol polyprotein OS=Citrus paradisi GN=pol PE=4 SV=1[more]
A5AEN5_VITVI5.4e-2253.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011340 PE=4 SV=1[more]
BLAST of MELO3C025350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147863092|emb|CAN82978.1|2.4e-2357.58hypothetical protein VITISV_023328 [Vitis vinifera][more]
gi|147828230|emb|CAN66576.1|5.3e-2356.57hypothetical protein VITISV_016964 [Vitis vinifera][more]
gi|985465997|ref|XP_015389484.1|7.0e-2354.00PREDICTED: uncharacterized protein LOC107178620 [Citrus sinensis][more]
gi|147818102|emb|CAN73567.1|9.1e-2354.00hypothetical protein VITISV_003451 [Vitis vinifera][more]
gi|14586969|gb|AAK70407.1|AF369930_23.5e-2254.00pol polyprotein [Citrus x paradisi][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025350T1MELO3C025350T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 8..103
score: 1.1
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 8..103
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025350Cucumber (Chinese Long) v3cucmeB049
MELO3C025350Cucumber (Chinese Long) v3cucmeB116
MELO3C025350Watermelon (97103) v2mewmbB239
MELO3C025350Watermelon (97103) v2mewmbB262
MELO3C025350Watermelon (97103) v2mewmbB273
MELO3C025350Wax gourdmewgoB273
MELO3C025350Wax gourdmewgoB290
MELO3C025350Melon (DHL92) v3.5.1memeB104
MELO3C025350Cucurbita moschata (Rifu)cmomeB098
MELO3C025350Cucumber (Gy14) v1cgymeB169
MELO3C025350Cucurbita maxima (Rimu)cmameB058
MELO3C025350Cucurbita maxima (Rimu)cmameB105
MELO3C025350Cucurbita maxima (Rimu)cmameB719
MELO3C025350Cucurbita moschata (Rifu)cmomeB049
MELO3C025350Cucurbita moschata (Rifu)cmomeB140
MELO3C025350Cucurbita moschata (Rifu)cmomeB710
MELO3C025350Wild cucumber (PI 183967)cpimeB110
MELO3C025350Cucumber (Chinese Long) v2cumeB003
MELO3C025350Watermelon (Charleston Gray)mewcgB232
MELO3C025350Watermelon (Charleston Gray)mewcgB255
MELO3C025350Watermelon (97103) v1mewmB284
MELO3C025350Watermelon (97103) v1mewmB290
MELO3C025350Cucurbita pepo (Zucchini)cpemeB082
MELO3C025350Cucurbita pepo (Zucchini)cpemeB334
MELO3C025350Cucurbita pepo (Zucchini)cpemeB621
MELO3C025350Cucurbita pepo (Zucchini)cpemeB751
MELO3C025350Bottle gourd (USVL1VR-Ls)lsimeB102
MELO3C025350Bottle gourd (USVL1VR-Ls)lsimeB403
MELO3C025350Cucumber (Gy14) v2cgybmeB045
MELO3C025350Cucumber (Gy14) v2cgybmeB095
MELO3C025350Silver-seed gourdcarmeB0035
MELO3C025350Silver-seed gourdcarmeB0131
MELO3C025350Silver-seed gourdcarmeB0572