MELO3C025293 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025293
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionFKBP-type peptidyl-prolyl cis-trans isomerase SlyD
Locationchr2 : 18013680 .. 18013898 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGGTCCATCAACTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGTACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGAAAACCAGCTCGAAATCGACGACGTCCGGATTGTGGAATACATTGA

mRNA sequence

ATGGATGTTGGTCCATCAACTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGTACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGAAAACCAGCTCGAAATCGACGACGTCCGGATTGTGGAATACATTGA

Coding sequence (CDS)

ATGGATGTTGGTCCATCAACTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGTACCTGCAGATGTATCAGATCGACAAGAGTACCAACAAGAACTAGAGAACCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGAAAACCAGCTCGAAATCGACGACGTCCGGATTGTGGAATACATTGA

Protein sequence

MDVGPSTSYMHGHGRGYGEHNEYLYHEVPADVSDRQEYQQELENQEDQEQHRVQSRRRKPARNRRRPDCGIH*
Homology
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BLAST of MELO3C025293 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-15
Identity = 46/83 (55.42%), Postives = 56/83 (67.47%), Query Frame = 1 

Query: 5   PSTSYMHGHGRGYGEHNEYLYHEVPADV---SDRQEY------------QQELENQEDQE 64
           PS+SYMHGHGRG GEHNEYLY++VPA V   SD Q+             QQ+ EN E+ +
Sbjct: 182 PSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQ 241

Query: 65  QHRVQSRRRKPARNRRRPDCGIH 73
           Q RVQ RRR+ A+NR+RP CG H
Sbjct: 242 QQRVQIRRRQLAKNRQRPGCGTH 264

The following BLAST results are available for this feature:
BLAST of MELO3C025293 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|2.9e-1555.42PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025293T1MELO3C025293T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C025293Cucurbita pepo (Zucchini)cpemeB082
MELO3C025293Cucurbita pepo (Zucchini)cpemeB334
MELO3C025293Cucurbita pepo (Zucchini)cpemeB621
MELO3C025293Bottle gourd (USVL1VR-Ls)lsimeB102
MELO3C025293Bottle gourd (USVL1VR-Ls)lsimeB208
MELO3C025293Bottle gourd (USVL1VR-Ls)lsimeB403
MELO3C025293Cucumber (Gy14) v2cgybmeB053
MELO3C025293Cucumber (Gy14) v2cgybmeB095
MELO3C025293Silver-seed gourdcarmeB0035
MELO3C025293Silver-seed gourdcarmeB0131
MELO3C025293Silver-seed gourdcarmeB0572
MELO3C025293Cucumber (Chinese Long) v3cucmeB058
MELO3C025293Cucumber (Chinese Long) v3cucmeB116
MELO3C025293Cucumber (Chinese Long) v3cucmeB564
MELO3C025293Watermelon (97103) v2mewmbB239
MELO3C025293Watermelon (97103) v2mewmbB265
MELO3C025293Watermelon (97103) v2mewmbB273
MELO3C025293Wax gourdmewgoB270
MELO3C025293Wax gourdmewgoB287
MELO3C025293Wax gourdmewgoB290
MELO3C025293Melon (DHL92) v3.5.1memeB104
MELO3C025293Cucurbita moschata (Rifu)cmomeB098
MELO3C025293Cucumber (Gy14) v1cgymeB089
MELO3C025293Cucumber (Gy14) v1cgymeB169
MELO3C025293Cucurbita maxima (Rimu)cmameB058
MELO3C025293Cucurbita maxima (Rimu)cmameB105
MELO3C025293Cucurbita maxima (Rimu)cmameB150
MELO3C025293Cucurbita maxima (Rimu)cmameB719
MELO3C025293Cucurbita moschata (Rifu)cmomeB049
MELO3C025293Cucurbita moschata (Rifu)cmomeB140
MELO3C025293Cucurbita moschata (Rifu)cmomeB710
MELO3C025293Wild cucumber (PI 183967)cpimeB059
MELO3C025293Wild cucumber (PI 183967)cpimeB110
MELO3C025293Wild cucumber (PI 183967)cpimeB552
MELO3C025293Cucumber (Chinese Long) v2cumeB003
MELO3C025293Watermelon (Charleston Gray)mewcgB232
MELO3C025293Watermelon (Charleston Gray)mewcgB258
MELO3C025293Watermelon (97103) v1mewmB261
MELO3C025293Watermelon (97103) v1mewmB284
MELO3C025293Watermelon (97103) v1mewmB293