MELO3C025284 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025284
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Basic-leucine zipper (bZIP) transcription factor family protein
Location	chr8 : 24992943 .. 24993707 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCCCAGAAGACCTTTATGCAAGTGAAAACTCTAAAACGCCTATAGGTGCAACTGCTATGTCGATCTGTCCTCTTGTGACCAAGGCGTCCCCTCAACGAGTAGGAGGAACGAAGCCTATCACAACTTTTGAGATTTCTCATTTTTGTGTGGACAACTTAATTTCTGATCTCCGACGAAAAACTGCCATAACTTTGTCGGAAAGCTTACGACAGAAGATCATTTGTACCCCTTTTGAGCGAGTAAGTAGTCTTAAACCAGAAATGCGTAAGATCTTTGCTGCAATTGCGACTAGTGACAGCAACAACCTTACCTTTTTAAAAGAACTTGTGGATGGTTACTTTCAAGGTGTAGAGAACCATAATCAAATGCGTTCCTCAATTTTGCTCCAGTCAACGAAGGATGCTCAATTAATGGAGACAAAAGGTTTTGTGAAGACTTTGCGACTTGATGAGAACCGTATATTGAAGGAGACAAGTACTGTCCAACGCCGCCTTGCACGACTATCTGCCAAAGAGGCTAAACTAGAAGCAAAACTAAAAGTGGTGCGGACAGAGTCCACCAAACTTTCTGGCATGATTTCTAAAAATGAGATAGAGCTGAAGCAGAAGCAACGTGAGATTTCAAAGACTTGCGAGGAAATTGACAAACTTAAATGTGCCCTCATCATTGGAGATGCTGATGCAAAAATGTTGTCGGCACTCCGTGAATCTTTAGAAAACACATTAGAAGAGCTTAAGAACCTTAAATGGACCCCTTGA

mRNA sequence

ATGGCGAGCCCAGAAGACCTTTATGCAAGTGAAAACTCTAAAACGCCTATAGGTGCAACTGCTATGTCGATCTGTCCTCTTGTGACCAAGGCGTCCCCTCAACGAGTAGGAGGAACGAAGCCTATCACAACTTTTGAGATTTCTCATTTTTGTGTGGACAACTTAATTTCTGATCTCCGACGAAAAACTGCCATAACTTTGTCGGAAAGCTTACGACAGAAGATCATTTGTACCCCTTTTGAGCGAGTAAGTAGTCTTAAACCAGAAATGCGTAAGATCTTTGCTGCAATTGCGACTAGTGACAGCAACAACCTTACCTTTTTAAAAGAACTTGTGGATGGTTACTTTCAAGGTGTAGAGAACCATAATCAAATGCGTTCCTCAATTTTGCTCCAGTCAACGAAGGATGCTCAATTAATGGAGACAAAAGGTTTTGTGAAGACTTTGCGACTTGATGAGAACCGTATATTGAAGGAGACAAGTACTGTCCAACGCCGCCTTGCACGACTATCTGCCAAAGAGGCTAAACTAGAAGCAAAACTAAAAGTGGTGCGGACAGAGTCCACCAAACTTTCTGGCATGATTTCTAAAAATGAGATAGAGCTGAAGCAGAAGCAACGTGAGATTTCAAAGACTTGCGAGGAAATTGACAAACTTAAATGTGCCCTCATCATTGGAGATGCTGATGCAAAAATGTTGTCGGCACTCCGTGAATCTTTAGAAAACACATTAGAAGAGCTTAAGAACCTTAAATGGACCCCTTGA

Coding sequence (CDS)

ATGGCGAGCCCAGAAGACCTTTATGCAAGTGAAAACTCTAAAACGCCTATAGGTGCAACTGCTATGTCGATCTGTCCTCTTGTGACCAAGGCGTCCCCTCAACGAGTAGGAGGAACGAAGCCTATCACAACTTTTGAGATTTCTCATTTTTGTGTGGACAACTTAATTTCTGATCTCCGACGAAAAACTGCCATAACTTTGTCGGAAAGCTTACGACAGAAGATCATTTGTACCCCTTTTGAGCGAGTAAGTAGTCTTAAACCAGAAATGCGTAAGATCTTTGCTGCAATTGCGACTAGTGACAGCAACAACCTTACCTTTTTAAAAGAACTTGTGGATGGTTACTTTCAAGGTGTAGAGAACCATAATCAAATGCGTTCCTCAATTTTGCTCCAGTCAACGAAGGATGCTCAATTAATGGAGACAAAAGGTTTTGTGAAGACTTTGCGACTTGATGAGAACCGTATATTGAAGGAGACAAGTACTGTCCAACGCCGCCTTGCACGACTATCTGCCAAAGAGGCTAAACTAGAAGCAAAACTAAAAGTGGTGCGGACAGAGTCCACCAAACTTTCTGGCATGATTTCTAAAAATGAGATAGAGCTGAAGCAGAAGCAACGTGAGATTTCAAAGACTTGCGAGGAAATTGACAAACTTAAATGTGCCCTCATCATTGGAGATGCTGATGCAAAAATGTTGTCGGCACTCCGTGAATCTTTAGAAAACACATTAGAAGAGCTTAAGAACCTTAAATGGACCCCTTGA

Protein sequence

MASPEDLYASENSKTPIGATAMSICPLVTKASPQRVGGTKPITTFEISHFCVDNLISDLRRKTAITLSESLRQKIICTPFERVSSLKPEMRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLMETKGFVKTLRLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIELKQKQREISKTCEEIDKLKCALIIGDADAKMLSALRESLENTLEELKNLKWTP*

Homology

[Close]

BLAST of MELO3C025284 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.8e-18
Identity = 64/230 (27.83%), Postives = 116/230 (50.43%), Query Frame = 1


Query: 26  PLVTKASPQRVGGTKPITTFEISHFCVDNLISDLRRKTAITLSESLRQKIICTPFERVSS 85
           PL     P      + +   E S +  + ++S+  +KTA+ + E ++ KI+ TPFE +  
Sbjct: 470 PLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMQTPFECIPR 529

Query: 86  LKPEMRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMRSSI---LLQSTKDAQLMET 145
           L+PE+  + + I    ++ LT L+E ++ Y + V+N N ++SS    LL + K  QL E 
Sbjct: 530 LRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLNEK 589

Query: 146 KGFVKTLRLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIEL 205
              +K       ++  +   +Q R A LS +  +LE +L  +  E  +LS +  +    +
Sbjct: 590 TSAIKEALTLVKQLRGDVKVIQERAAELSLERKELEKRLWSINAEFEQLSILSCEKAEAI 649

Query: 206 KQKQREISKTCEEIDKLKCALIIGDADAKMLSALRESLENTLEELKNLKW 253
            Q++ E+    +E++ L+    I     K L+ +R+S+E   EE KN KW
Sbjct: 650 DQQELEVFMLQDEVNTLESTPAITKEAIKALATVRQSMEVAREEFKNFKW 699

[Close]

BLAST of MELO3C025284 vs. TrEMBL
Match: U5FJ03_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09350g PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.3e-10
Identity = 52/217 (23.96%), Postives = 105/217 (48.39%), Query Frame = 1


Query: 41  PITTFE---ISHFCVDNLISDLRRKTAITLSESLRQKIICTPFERVSSLKPEMRKIFAAI 100
           P T FE   ++ +C D++I ++R + AI   ES+R KI+ TP   + +L  E+ KI  +I
Sbjct: 735 PTTAFEPSGVTRYCADDIIGEIRSEFAIKCWESIRNKIVRTPIHYIPNLAGEVEKILHSI 794

Query: 101 ATSDSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLMETKGFVKTLRLDENRIL 160
                 + + ++ ++    + V+    + SS+    T + + ++ +     L+ D  R  
Sbjct: 795 -EDIKVDCSSIRRMLTEVIEDVKKFIHLESSLSPMMTSEQRALDVEKLEVQLK-DSERFE 854

Query: 161 KETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIELKQKQREISKTCEEID 220
            E S   R ++    +  K+  +L  ++++ T+L   +   + +L +++   S    EI 
Sbjct: 855 DEAS---RSISTTHTEITKIAEQLMELQSKKTELESSLKACDEKLSERKIITSGIRAEIT 914

Query: 221 KLKCALIIGDADAKMLSALRESLENTLEELKNLKWTP 255
            L  + +I + DA +L  L+  LE   +EL+   W P
Sbjct: 915 TLSASPVISETDAAILQKLKGLLETKQKELEGHSWKP 946

[Close]

BLAST of MELO3C025284 vs. NCBI nr
Match: gi|778665095|ref|XP_011648484.1| (PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 8.8e-51
Identity = 131/245 (53.47%), Postives = 144/245 (58.78%), Query Frame = 1


Query: 10  SENSKTPIGATAMSICPLVTKASPQRVGGTKPITTFEISHFCVDNLISDLRRKTAITLSE 69
           +ENSK PIGA  +S  PLV K  PQ                           KTAITL E
Sbjct: 533 NENSKKPIGANIVSARPLVIKGPPQ---------------------------KTAITLWE 592

Query: 70  SLRQKIICTPFERVSSLKPEMRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMRSSI 129
           +LRQKII TPFER+SSL+PEM KIF AIATSD+NNL  L EL                  
Sbjct: 593 NLRQKIIRTPFERLSSLEPEMHKIFDAIATSDNNNLIVLTEL------------------ 652

Query: 130 LLQSTKDAQLMETKGFVKTLRLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRTEST 189
                      E KGFVKTLR+DENRIL ET+T +RRL RLSAKEAKLEAKLK+      
Sbjct: 653 ---------FTEAKGFVKTLRVDENRILAETNTAKRRLTRLSAKEAKLEAKLKM------ 702

Query: 190 KLSGMISKNEIELKQKQREISKTCEEIDKLKCALIIGDADAKMLSALRESLENTLEELKN 249
                          KQ EISKTCEEIDKL+CA I+GD DAKMLS LRESLE+TLEELKN
Sbjct: 713 ---------------KQHEISKTCEEIDKLECASIVGDIDAKMLSTLRESLESTLEELKN 702

Query: 250 LKWTP 255
            KWTP
Sbjct: 773 FKWTP 702

[Close]

BLAST of MELO3C025284 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-18
Identity = 64/230 (27.83%), Postives = 116/230 (50.43%), Query Frame = 1


Query: 26  PLVTKASPQRVGGTKPITTFEISHFCVDNLISDLRRKTAITLSESLRQKIICTPFERVSS 85
           PL     P      + +   E S +  + ++S+  +KTA+ + E ++ KI+ TPFE +  
Sbjct: 470 PLKFSELPLGASNKQTMRNPEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMQTPFECIPR 529

Query: 86  LKPEMRKIFAAIATSDSNNLTFLKELVDGYFQGVENHNQMRSSI---LLQSTKDAQLMET 145
           L+PE+  + + I    ++ LT L+E ++ Y + V+N N ++SS    LL + K  QL E 
Sbjct: 530 LRPEIATVLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLNEK 589

Query: 146 KGFVKTLRLDENRILKETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIEL 205
              +K       ++  +   +Q R A LS +  +LE +L  +  E  +LS +  +    +
Sbjct: 590 TSAIKEALTLVKQLRGDVKVIQERAAELSLERKELEKRLWSINAEFEQLSILSCEKAEAI 649

Query: 206 KQKQREISKTCEEIDKLKCALIIGDADAKMLSALRESLENTLEELKNLKW 253
            Q++ E+    +E++ L+    I     K L+ +R+S+E   EE KN KW
Sbjct: 650 DQQELEVFMLQDEVNTLESTPAITKEAIKALATVRQSMEVAREEFKNFKW 699

[Close]

BLAST of MELO3C025284 vs. NCBI nr
Match: gi|566212381|ref|XP_006373173.1| (hypothetical protein POPTR_0017s09350g [Populus trichocarpa])

HSP 1 Score: 73.2 bits (178), Expect = 7.5e-10
Identity = 52/217 (23.96%), Postives = 105/217 (48.39%), Query Frame = 1


Query: 41  PITTFE---ISHFCVDNLISDLRRKTAITLSESLRQKIICTPFERVSSLKPEMRKIFAAI 100
           P T FE   ++ +C D++I ++R + AI   ES+R KI+ TP   + +L  E+ KI  +I
Sbjct: 735 PTTAFEPSGVTRYCADDIIGEIRSEFAIKCWESIRNKIVRTPIHYIPNLAGEVEKILHSI 794

Query: 101 ATSDSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLMETKGFVKTLRLDENRIL 160
                 + + ++ ++    + V+    + SS+    T + + ++ +     L+ D  R  
Sbjct: 795 -EDIKVDCSSIRRMLTEVIEDVKKFIHLESSLSPMMTSEQRALDVEKLEVQLK-DSERFE 854

Query: 161 KETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIELKQKQREISKTCEEID 220
            E S   R ++    +  K+  +L  ++++ T+L   +   + +L +++   S    EI 
Sbjct: 855 DEAS---RSISTTHTEITKIAEQLMELQSKKTELESSLKACDEKLSERKIITSGIRAEIT 914

Query: 221 KLKCALIIGDADAKMLSALRESLENTLEELKNLKWTP 255
            L  + +I + DA +L  L+  LE   +EL+   W P
Sbjct: 915 TLSASPVISETDAAILQKLKGLLETKQKELEGHSWKP 946

[Close]

BLAST of MELO3C025284 vs. NCBI nr
Match: gi|743916521|ref|XP_011002234.1| (PREDICTED: uncharacterized protein LOC105109284 [Populus euphratica])

HSP 1 Score: 70.5 bits (171), Expect = 4.9e-09
Identity = 48/217 (22.12%), Postives = 109/217 (50.23%), Query Frame = 1


Query: 41  PITTFE---ISHFCVDNLISDLRRKTAITLSESLRQKIICTPFERVSSLKPEMRKIFAAI 100
           P T FE   ++ +C D++I ++R + AI   ES+R KI+ TP   + +L  E+ KI  +I
Sbjct: 786 PTTAFEPSGVTRYCADDIIREIRSEFAIKCWESIRNKIVRTPIHYIPNLAGEVEKILHSI 845

Query: 101 ATSDSNNLTFLKELVDGYFQGVENHNQMRSSILLQSTKDAQLMETKGFVKTLRLDENRIL 160
                 + + ++ +V    +  +    +++S+    T + + ++ +     ++L +++  
Sbjct: 846 -EDIKVDCSSIRRMVTEVIEDAKKFIHLKASLSPMMTSEQRALDVEKL--EVQLKDSKAF 905

Query: 161 KETSTVQRRLARLSAKEAKLEAKLKVVRTESTKLSGMISKNEIELKQKQREISKTCEEID 220
           ++ ++  R ++   A+  K+  +L  ++++ T+L   +   + +L +++   S    EI 
Sbjct: 906 EDEAS--RSISTTHAEITKIAKQLMELQSKKTELESSLKACDEKLSKRKIITSSIRAEIT 965

Query: 221 KLKCALIIGDADAKMLSALRESLENTLEELKNLKWTP 255
            L  + +I + DA +L  L+  LE   +EL    W P
Sbjct: 966 TLSSSPVISETDAAILQKLKGLLETKQKELGGHSWKP 997

The following BLAST results are available for this feature:

BLAST of MELO3C025284 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB9_CUCME	1.8e-18	27.83	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
U5FJ03_POPTR	5.3e-10	23.96	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09350g PE=4 SV=1	[more]

BLAST of MELO3C025284 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665095\|ref\|XP_011648484.1\|	8.8e-51	53.47	PREDICTED: uncharacterized protein LOC105434487 [Cucumis sativus]	[more]
gi\|307136292\|gb\|ADN34118.1\|	2.6e-18	27.83	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|566212381\|ref\|XP_006373173.1\|	7.5e-10	23.96	hypothetical protein POPTR_0017s09350g [Populus trichocarpa]	[more]
gi\|743916521\|ref\|XP_011002234.1\|	4.9e-09	22.12	PREDICTED: uncharacterized protein LOC105109284 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025284T1	MELO3C025284T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 167..187 score: -coord: 195..222 score: -coord: 230..253 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025284	Wax gourd	mewgoB652
MELO3C025284	Cucumber (Gy14) v1	cgymeB009
MELO3C025284	Cucurbita maxima (Rimu)	cmameB610
MELO3C025284	Cucurbita maxima (Rimu)	cmameB801
MELO3C025284	Cucurbita moschata (Rifu)	cmomeB599
MELO3C025284	Cucurbita moschata (Rifu)	cmomeB785
MELO3C025284	Wild cucumber (PI 183967)	cpimeB323
MELO3C025284	Watermelon (Charleston Gray)	mewcgB532
MELO3C025284	Watermelon (97103) v1	mewmB585
MELO3C025284	Cucurbita pepo (Zucchini)	cpemeB070
MELO3C025284	Cucurbita pepo (Zucchini)	cpemeB459
MELO3C025284	Bottle gourd (USVL1VR-Ls)	lsimeB157
MELO3C025284	Cucumber (Gy14) v2	cgybmeB280
MELO3C025284	Silver-seed gourd	carmeB0283
MELO3C025284	Silver-seed gourd	carmeB0627
MELO3C025284	Cucumber (Chinese Long) v3	cucmeB328
MELO3C025284	Watermelon (97103) v2	mewmbB540