MELO3C025277 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025277
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP synthase epsilon chain, chloroplastic
Location	chr8 : 25202214 .. 25202576 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAACAAGTCCAAGGATGGGTCAAATTACGAATCAAGAACCAGTATGATAGAATAAGAGAGAGTATGAATGAGATCTTTCGGCAGACAGGAAGGGGAATAGCCCTAGCCGCTTGCATTCAGTCAGAATCCAAAAGTAGGAGTAGGGGAGTAGGTCAGATCAAGACTAATCTGTCTGCTAACTCGATTTTGAGTCTTGTTGAGGTCACTATTTTAGTAAATGATGCAGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGTTCAGGGTAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACAAGCTAGGACATGA

mRNA sequence

ATGGATAAACAAGTCCAAGGATGGGTCAAATTACGAATCAAGAACCAGTATGATAGAATAAGAGAGAGTATGAATGAGATCTTTCGGCAGACAGGAAGGGGAATAGCCCTAGCCGCTTGCATTCAGTCAGAATCCAAAAGTAGGAGTAGGGGAGTAGGTCAGATCAAGACTAATCTGTCTGCTAACTCGATTTTGAGTCTTGTTGAGGTCACTATTTTAGTAAATGATGCAGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGTTCAGGGTAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACAAGCTAGGACATGA

Coding sequence (CDS)

ATGGATAAACAAGTCCAAGGATGGGTCAAATTACGAATCAAGAACCAGTATGATAGAATAAGAGAGAGTATGAATGAGATCTTTCGGCAGACAGGAAGGGGAATAGCCCTAGCCGCTTGCATTCAGTCAGAATCCAAAAGTAGGAGTAGGGGAGTAGGTCAGATCAAGACTAATCTGTCTGCTAACTCGATTTTGAGTCTTGTTGAGGTCACTATTTTAGTAAATGATGCAGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGTGGAAGCCAACTTGAGGAAAGTTCAGGGTAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGACAAGCTAGGACATGA

Protein sequence

MDKQVQGWVKLRIKNQYDRIRESMNEIFRQTGRGIALAACIQSESKSRSRGVGQIKTNLSANSILSLVEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART*

Homology

[Close]

BLAST of MELO3C025277 vs. Swiss-Prot
Match: ATPE_CUCSA (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.2e-19
Identity = 49/52 (94.23%), Postives = 48/52 (92.31%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. Swiss-Prot
Match: ATPE_ARATH (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana GN=atpE PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-18
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           E+TILVNDAEK SDIDPQEAQQTLEI EANLRK +GKRQTIEANLALR+ART
Sbjct: 73  EITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLALRRART 124

[Close]

BLAST of MELO3C025277 vs. Swiss-Prot
Match: ATPE_GOSBA (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense GN=atpE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           E+TILVNDAEK SDIDPQEAQQ LEI EANLRK +GKRQTIEANLALR+ART
Sbjct: 73  EITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLALRRART 124

[Close]

BLAST of MELO3C025277 vs. Swiss-Prot
Match: ATPE_EUCGG (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           E+TILVNDAEK SDIDPQEAQ+TLE+ EANLRK +GKRQTIEANLALR+ART
Sbjct: 73  EITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEANLALRRART 124

[Close]

BLAST of MELO3C025277 vs. Swiss-Prot
Match: ATPE_GOSHI (ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           E+TILVNDAEK SDIDPQEAQQ LEI EANLRK +GKRQTIEANLALR+ART
Sbjct: 73  EITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEANLALRRART 124

[Close]

BLAST of MELO3C025277 vs. TrEMBL
Match: A0A0S2IGL3_CUCPE (AtpE OS=Cucurbita pepo var. ozarkana GN=atpE PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. TrEMBL
Match: A0A0S2IGX0_CUCPE (AtpE OS=Cucurbita pepo var. texana GN=atpE PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. TrEMBL
Match: A0A0S2IDX1_9ROSI (AtpE OS=Cucurbita argyrosperma GN=atpE PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. TrEMBL
Match: A0A0S2IEZ8_9ROSI (AtpE OS=Cucurbita ecuadorensis GN=atpE PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. TrEMBL
Match: W8E6W2_9ROSI (ATP synthase CF1 epsilon subunit OS=Cucumis hystrix GN=atpE PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. TAIR10
Match: ATCG00470.1 (ATCG00470.1 ATP synthase epsilon chain)

HSP 1 Score: 91.7 bits (226), Expect = 3.4e-19
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           E+TILVNDAEK SDIDPQEAQQTLEI EANLRK +GKRQTIEANLALR+ART
Sbjct: 73  EITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQTIEANLALRRART 124

[Close]

BLAST of MELO3C025277 vs. NCBI nr
Match: gi|952954489|gb|ALO21851.1| (AtpE (plastid) [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. NCBI nr
Match: gi|68164809|ref|YP_247605.1| (ATP synthase CF1 epsilon subunit [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. NCBI nr
Match: gi|952954770|gb|ALO22128.1| (AtpE (plastid) [Cucurbita ficifolia])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 77  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 128

[Close]

BLAST of MELO3C025277 vs. NCBI nr
Match: gi|952955568|gb|ALO22914.1| (AtpE (plastid) [Cucurbita pedatifolia])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

[Close]

BLAST of MELO3C025277 vs. NCBI nr
Match: gi|952954676|gb|ALO22035.1| (AtpE (plastid) [Cucurbita ecuadorensis])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 1


Query: 69  EVTILVNDAEKASDIDPQEAQQTLEIVEANLRKVQGKRQTIEANLALRQART 121
           EVTILVNDAEKASDIDPQEAQQTLEI EANLRK QGKRQTIEANLALR+ART
Sbjct: 75  EVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIEANLALRRART 126

The following BLAST results are available for this feature:

BLAST of MELO3C025277 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPE_CUCSA	4.2e-19	94.23	ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus GN=atpE PE=3 SV=1	[more]
ATPE_ARATH	6.1e-18	88.46	ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana GN=atpE PE=1 S...	[more]
ATPE_GOSBA	1.4e-17	86.54	ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense GN=atpE PE=3 S...	[more]
ATPE_EUCGG	1.4e-17	84.62	ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus...	[more]
ATPE_GOSHI	1.4e-17	86.54	ATP synthase epsilon chain, chloroplastic OS=Gossypium hirsutum GN=atpE PE=3 SV=...	[more]

BLAST of MELO3C025277 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IGL3_CUCPE	4.7e-17	94.23	AtpE OS=Cucurbita pepo var. ozarkana GN=atpE PE=3 SV=1	[more]
A0A0S2IGX0_CUCPE	4.7e-17	94.23	AtpE OS=Cucurbita pepo var. texana GN=atpE PE=3 SV=1	[more]
A0A0S2IDX1_9ROSI	4.7e-17	94.23	AtpE OS=Cucurbita argyrosperma GN=atpE PE=3 SV=1	[more]
A0A0S2IEZ8_9ROSI	4.7e-17	94.23	AtpE OS=Cucurbita ecuadorensis GN=atpE PE=3 SV=1	[more]
W8E6W2_9ROSI	4.7e-17	94.23	ATP synthase CF1 epsilon subunit OS=Cucumis hystrix GN=atpE PE=3 SV=1	[more]

BLAST of MELO3C025277 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00470.1	3.4e-19	88.46	ATCG00470.1 ATP synthase epsilon chain	[more]

BLAST of MELO3C025277 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|952954489\|gb\|ALO21851.1\|	6.7e-17	94.23	AtpE (plastid) [Cucurbita argyrosperma subsp. sororia]	[more]
gi\|68164809\|ref\|YP_247605.1\|	6.7e-17	94.23	ATP synthase CF1 epsilon subunit [Cucumis sativus]	[more]
gi\|952954770\|gb\|ALO22128.1\|	6.7e-17	94.23	AtpE (plastid) [Cucurbita ficifolia]	[more]
gi\|952955568\|gb\|ALO22914.1\|	6.7e-17	94.23	AtpE (plastid) [Cucurbita pedatifolia]	[more]
gi\|952954676\|gb\|ALO22035.1\|	6.7e-17	94.23	AtpE (plastid) [Cucurbita ecuadorensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001469	ATP_synth_F1_dsu/esu

Vocabulary: **Cellular Component**
Term	Definition
GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)

Vocabulary: **Molecular Function**
Term	Definition
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
GO:0046961	proton-transporting ATPase activity, rotational mechanism

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006119	oxidative phosphorylation
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025277T1	MELO3C025277T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001469	ATPase, F1 complex, delta/epsilon subunit	PANTHER	PTHR13822	ATP SYNTHASE DELTA/EPSILON CHAIN	coord: 69..120 score: 2.8
None	No IPR available	unknown	Coil	Coil	coord: 92..112 scor
None	No IPR available	PANTHER	PTHR13822:SF8	ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTIC	coord: 69..120 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025277	Cucurbita moschata (Rifu)	cmomeB599
MELO3C025277	Cucurbita moschata (Rifu)	cmomeB785
MELO3C025277	Wild cucumber (PI 183967)	cpimeB323
MELO3C025277	Cucumber (Chinese Long) v2	cumeB275
MELO3C025277	Watermelon (Charleston Gray)	mewcgB532
MELO3C025277	Watermelon (97103) v1	mewmB585
MELO3C025277	Cucurbita pepo (Zucchini)	cpemeB070
MELO3C025277	Cucurbita pepo (Zucchini)	cpemeB459
MELO3C025277	Bottle gourd (USVL1VR-Ls)	lsimeB157
MELO3C025277	Cucumber (Gy14) v2	cgybmeB280
MELO3C025277	Silver-seed gourd	carmeB0283
MELO3C025277	Silver-seed gourd	carmeB0627
MELO3C025277	Cucumber (Chinese Long) v3	cucmeB328
MELO3C025277	Watermelon (97103) v2	mewmbB540
MELO3C025277	Wax gourd	mewgoB652
MELO3C025277	Cucurbita maxima (Rimu)	cmameB610
MELO3C025277	Cucurbita maxima (Rimu)	cmameB801