MELO3C025186 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025186
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMembrane protein insertase YidC
Locationchr10 : 13094964 .. 13095324 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCACATGACCTATTTTGAGGAGAACAGACACCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTAGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATAATCCCGACGGAAGGGGTTTAAGTGCTTTGATAGTTCCTGATGTTCCACCATTGGTTTGCACGTTTTCTCTTCTAAAATTTTTTTTTAAGTTTTGTTCATCTTCTTCATAAGTGA

mRNA sequence

ATGAGGCACATGACCTATTTTGAGGAGAACAGACACCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTAGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATAATCCCGACGGAAGGGGTTTAAGTGCTTTGATAGTTCCTGATGTTCCACCATTGTGA

Coding sequence (CDS)

ATGAGGCACATGACCTATTTTGAGGAGAACAGACACCATTTGGTGAGTAGTGCCATTCCTCCCCCTTCACAGCCTAGACTACCCAAGAACCGAGGGAGCAACCTAGGTGGTAAAGAAATTCGATTGGTTGAGGCGATGGCTCCTAATCTTGAGGAGGAGGTAAATGAGCATAAAGATGAGAGCGATAGCAGCAAAAGTGATCGTCATTGGAAGAGACCTTTGAAGAAAGCGAAGGTATCAGGTGATAATCCCGACGGAAGGGGTTTAAGTGCTTTGATAGTTCCTGATGTTCCACCATTGTGA

Protein sequence

MRHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDESDSSKSDRHWKRPLKKAKVSGDNPDGRGLSALIVPDVPPL*
Homology
[Close]
BLAST of MELO3C025186 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-38
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 1 

Query: 2   RHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDES 61
           +HMTYFE+NRHHLVSSAI PPSQPRLPKNRGSNLGGKEI LVEAMAPNLEEEV EHKDES
Sbjct: 300 KHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDES 359

Query: 62  DSSKSDRHWKRPLKKAKVSGDNPDGRGLSALIVPD 97
           DSSKSDRHWKRPLKKAKVSGD+PD    + LI PD
Sbjct: 360 DSSKSDRHWKRPLKKAKVSGDHPD--WFARLIEPD 392

[Close]
BLAST of MELO3C025186 vs. TrEMBL
Match: A0A0A0KQU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 

Query: 46 MAPNLEEEVNEHKDESDSSKSDRHWKRPLKKAKVSGDNP 85
          MAP LE++V EHKDESD++KSDRHWKRPLKKAK     P
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKP 39

[Close]
BLAST of MELO3C025186 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 167.2 bits (422), Expect = 1.5e-38
Identity = 82/95 (86.32%), Postives = 86/95 (90.53%), Query Frame = 1 

Query: 2   RHMTYFEENRHHLVSSAIPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDES 61
           +HMTYFE+NRHHLVSSAI PPSQPRLPKNRGSNLGGKEI LVEAMAPNLEEEV EHKDES
Sbjct: 300 KHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDES 359

Query: 62  DSSKSDRHWKRPLKKAKVSGDNPDGRGLSALIVPD 97
           DSSKSDRHWKRPLKKAKVSGD+PD    + LI PD
Sbjct: 360 DSSKSDRHWKRPLKKAKVSGDHPD--WFARLIEPD 392

[Close]
BLAST of MELO3C025186 vs. NCBI nr
Match: gi|700195620|gb|KGN50797.1| (hypothetical protein Csa_5G264300 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1 

Query: 46 MAPNLEEEVNEHKDESDSSKSDRHWKRPLKKAKVSGDNP 85
          MAP LE++V EHKDESD++KSDRHWKRPLKKAK     P
Sbjct: 1  MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAKTPAAKP 39

The following BLAST results are available for this feature:
BLAST of MELO3C025186 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME1.1e-3886.32Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KQU9_CUCSA1.3e-0771.79Uncharacterized protein OS=Cucumis sativus GN=Csa_5G264300 PE=4 SV=1[more]
BLAST of MELO3C025186 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|1.5e-3886.32hypothetical protein [Cucumis melo subsp. melo][more]
gi|700195620|gb|KGN50797.1|1.8e-0771.79hypothetical protein Csa_5G264300 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025186T1MELO3C025186T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 40..67
scor