MELO3C025098 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025098
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Lipoyl synthase
Location	chr9 : 14356436 .. 14356915 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTTCTACTTGTTTTATTAATGGGTATAACTAATTTTTGATACTATTGAATTTTTCTTTTTGTATTGTCTTTTAGTGTGGATTACATCGTCTTAACAACTGTAGACCGTGATGATATTCCTAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAAAGCAATGAAGGTTGCATAGATTTTTCTACAATAATTTTTGTCTCTTTATTGATAAACTGAATTGTTGAAGGTTTCTTGGAAAAGTTACTAGAAGTCTGATTAGTCTTAGTGAATTTATTACGTAGGAACTTAAGCTTGGGACAATTTATTACGTAGGAACTTAAGCTCGGGATAATGGTTGAATGCTTAACTTCTGATTTCCGAGGTGACTTAAAGGTTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTGCTCACAATATTGAGACTGTGAAATGGCTTCAAAGAATTGTTAAAGATCCTCGAGCTGGGTAA

mRNA sequence

ATGTTCTCTTCTACTTGTTTTATTAATGGTGTGGATTACATCGTCTTAACAACTGTAGACCGTGATGATATTCCTAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAAAGCAATGAAGGAACTTAAGCTCGGGATAATGGTTGAATGCTTAACTTCTGATTTCCGAGGTGACTTAAAGGTTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTGCTCACAATATTGAGACTGTGAAATGGCTTCAAAGAATTGTTAAAGATCCTCGAGCTGGGTAA

Coding sequence (CDS)

ATGTTCTCTTCTACTTGTTTTATTAATGGTGTGGATTACATCGTCTTAACAACTGTAGACCGTGATGATATTCCTAATGGAGGAAGTGGGCATTTTGCTCAAACAGTTAAAGCAATGAAGGAACTTAAGCTCGGGATAATGGTTGAATGCTTAACTTCTGATTTCCGAGGTGACTTAAAGGTTGTGGAGACTCTTGTTCACTCAGGGTTAGATGTATTTGCTCACAATATTGAGACTGTGAAATGGCTTCAAAGAATTGTTAAAGATCCTCGAGCTGGGTAA

Protein sequence

MFSSTCFINGVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSGLDVFAHNIETVKWLQRIVKDPRAG*

Homology

[Close]

BLAST of MELO3C025098 vs. Swiss-Prot
Match: LISC1_POPTR (Lipoyl synthase 1, chloroplastic OS=Populus trichocarpa GN=LIP1P-1 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 8.6e-36
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIV+T+VDRDD+P+GGSGHFAQTV+AMKELK  IMVECLTSDFRGDLK V+TLVHSG
Sbjct: 172 GVDYIVITSVDRDDLPDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSG 231

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHN+ETVK LQRIV+DPRAG
Sbjct: 232 LDVFAHNVETVKRLQRIVRDPRAG 255

[Close]

BLAST of MELO3C025098 vs. Swiss-Prot
Match: LISC2_POPTR (Lipoyl synthase 2, chloroplastic OS=Populus trichocarpa GN=LIP1P-2 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 7.3e-35
Identity = 71/84 (84.52%), Postives = 77/84 (91.67%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIV+T+VDRDD+ +GGSGHFAQTV+AMKELK  IMVECLTSDFRGDLK V+TLVHSG
Sbjct: 193 GVDYIVITSVDRDDLSDGGSGHFAQTVRAMKELKPEIMVECLTSDFRGDLKAVDTLVHSG 252

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHN+ETVK LQRIV+DPRAG
Sbjct: 253 LDVFAHNVETVKRLQRIVRDPRAG 276

[Close]

BLAST of MELO3C025098 vs. Swiss-Prot
Match: LISC_RICCO (Lipoyl synthase, chloroplastic OS=Ricinus communis GN=LIP1P PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 9.5e-35
Identity = 71/84 (84.52%), Postives = 78/84 (92.86%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDD+P+GGSGHF++TV+AMK+LK  IMVECLTSDFRGDL+ VETLVHSG
Sbjct: 160 GVDYIVLTSVDRDDLPDGGSGHFSETVQAMKKLKPEIMVECLTSDFRGDLEAVETLVHSG 219

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 220 LDVFAHNIETVKRLQRIVRDPRAG 243

[Close]

BLAST of MELO3C025098 vs. Swiss-Prot
Match: LISC_ARATH (Lipoyl synthase, chloroplastic OS=Arabidopsis thaliana GN=LIP1P PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-34
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIV+T+VDRDDIP+GGSGHFAQTVKAMK  K  IM+ECLTSDFRGDL+ V+TLVHSG
Sbjct: 192 GVDYIVITSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDLEAVDTLVHSG 251

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHN+ETVK LQR+V+DPRAG
Sbjct: 252 LDVFAHNVETVKRLQRLVRDPRAG 275

[Close]

BLAST of MELO3C025098 vs. Swiss-Prot
Match: LISC2_ORYSI (Lipoyl synthase 2, chloroplastic OS=Oryza sativa subsp. indica GN=LIP1P-2 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.8e-33
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDY+VLT+VDRDD+P+GGSGHFAQTVKA+KELK GI+VECLTSDFRGDL+ V +L  SG
Sbjct: 179 GVDYVVLTSVDRDDLPDGGSGHFAQTVKALKELKPGILVECLTSDFRGDLEAVSSLASSG 238

Query: 70  LDVFAHNIETVKWLQRIVKDPRA 93
           LDVFAHNIETV+ LQRIV+DPRA
Sbjct: 239 LDVFAHNIETVRSLQRIVRDPRA 261

[Close]

BLAST of MELO3C025098 vs. TrEMBL
Match: A0A0A0KPN0_CUCSA (Lipoyl synthase, chloroplastic OS=Cucumis sativus GN=LIP1P PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.6e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 195 GVDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSG 254

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHN+ETVK LQRIV+DPRAG
Sbjct: 255 LDVFAHNVETVKRLQRIVRDPRAG 278

[Close]

BLAST of MELO3C025098 vs. TrEMBL
Match: A0A151TQ25_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_008343 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.9e-34
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMK LK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 157 GVDYIVLTSVDRDDIPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSG 216

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 217 LDVFAHNIETVKRLQRIVRDPRAG 240

[Close]

BLAST of MELO3C025098 vs. TrEMBL
Match: A0A0R4J646_SOYBN (Lipoyl synthase, chloroplastic OS=Glycine max GN=LIP1P PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-34
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDD+P+GGSGHFAQTVKAMK LK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 159 GVDYIVLTSVDRDDLPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSG 218

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 219 LDVFAHNIETVKRLQRIVRDPRAG 242

[Close]

BLAST of MELO3C025098 vs. TrEMBL
Match: A0A0B2PVA7_GLYSO (Lipoyl synthase, chloroplastic OS=Glycine soja GN=LIP1P PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.3e-34
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDD+P+GGSGHFAQTVKAMK LK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 159 GVDYIVLTSVDRDDLPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSG 218

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 219 LDVFAHNIETVKRLQRIVRDPRAG 242

[Close]

BLAST of MELO3C025098 vs. TrEMBL
Match: A0A0S3SLJ2_PHAAN (Lipoyl synthase, chloroplastic OS=Vigna angularis var. angularis GN=Vigan.08G024000 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.3e-34
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDDIP+GGSGHFAQTVKA+K LK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 161 GVDYIVLTSVDRDDIPDGGSGHFAQTVKALKNLKPEIMVECLTSDFRGDLKAVETLVHSG 220

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 221 LDVFAHNIETVKRLQRIVRDPRAG 244

[Close]

BLAST of MELO3C025098 vs. TAIR10
Match: AT5G08415.1 (AT5G08415.1 Radical SAM superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-35
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIV+T+VDRDDIP+GGSGHFAQTVKAMK  K  IM+ECLTSDFRGDL+ V+TLVHSG
Sbjct: 192 GVDYIVITSVDRDDIPDGGSGHFAQTVKAMKRHKPDIMIECLTSDFRGDLEAVDTLVHSG 251

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHN+ETVK LQR+V+DPRAG
Sbjct: 252 LDVFAHNVETVKRLQRLVRDPRAG 275

[Close]

BLAST of MELO3C025098 vs. TAIR10
Match: AT2G20860.1 (AT2G20860.1 lipoic acid synthase 1)

HSP 1 Score: 102.1 bits (253), Expect = 2.0e-22
Identity = 50/83 (60.24%), Postives = 62/83 (74.70%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDY+V+T+VDRDD+P+ GSGHFA+TV+ +K LK  +++E L  DFRGD   VE +  SG
Sbjct: 168 GVDYVVITSVDRDDLPDQGSGHFAETVQRLKFLKPEMLIEALVPDFRGDGGCVEKVSKSG 227

Query: 70  LDVFAHNIETVKWLQRIVKDPRA 93
           LDV AHNIETV+ LQ  V+D RA
Sbjct: 228 LDVLAHNIETVEELQSFVRDHRA 250

[Close]

BLAST of MELO3C025098 vs. NCBI nr
Match: gi|659090239|ref|XP_008445908.1| (PREDICTED: lipoyl synthase, chloroplastic [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-35
Identity = 77/84 (91.67%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 195 GVDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSG 254

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 255 LDVFAHNIETVKRLQRIVRDPRAG 278

[Close]

BLAST of MELO3C025098 vs. NCBI nr
Match: gi|449458724|ref|XP_004147097.1| (PREDICTED: lipoyl synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 9.5e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMKELK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 195 GVDYIVLTSVDRDDIPDGGSGHFAQTVKAMKELKPEIMVECLTSDFRGDLKAVETLVHSG 254

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHN+ETVK LQRIV+DPRAG
Sbjct: 255 LDVFAHNVETVKRLQRIVRDPRAG 278

[Close]

BLAST of MELO3C025098 vs. NCBI nr
Match: gi|1012357974|gb|KYP69158.1| (hypothetical protein KK1_008343 [Cajanus cajan])

HSP 1 Score: 152.9 bits (385), Expect = 2.8e-34
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDDIP+GGSGHFAQTVKAMK LK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 157 GVDYIVLTSVDRDDIPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSG 216

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 217 LDVFAHNIETVKRLQRIVRDPRAG 240

[Close]

BLAST of MELO3C025098 vs. NCBI nr
Match: gi|356575490|ref|XP_003555873.1| (PREDICTED: lipoyl synthase, chloroplastic [Glycine max])

HSP 1 Score: 152.1 bits (383), Expect = 4.7e-34
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDD+P+GGSGHFAQTVKAMK LK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 159 GVDYIVLTSVDRDDLPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSG 218

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 219 LDVFAHNIETVKRLQRIVRDPRAG 242

[Close]

BLAST of MELO3C025098 vs. NCBI nr
Match: gi|1012245645|ref|XP_015942135.1| (PREDICTED: lipoyl synthase 1, chloroplastic [Arachis duranensis])

HSP 1 Score: 152.1 bits (383), Expect = 4.7e-34
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 10  GVDYIVLTTVDRDDIPNGGSGHFAQTVKAMKELKLGIMVECLTSDFRGDLKVVETLVHSG 69
           GVDYIVLT+VDRDD+P+GGSGHFAQTVKAMK LK  IMVECLTSDFRGDLK VETLVHSG
Sbjct: 175 GVDYIVLTSVDRDDLPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLKAVETLVHSG 234

Query: 70  LDVFAHNIETVKWLQRIVKDPRAG 94
           LDVFAHNIETVK LQRIV+DPRAG
Sbjct: 235 LDVFAHNIETVKRLQRIVRDPRAG 258

The following BLAST results are available for this feature:

BLAST of MELO3C025098 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LISC1_POPTR	8.6e-36	85.71	Lipoyl synthase 1, chloroplastic OS=Populus trichocarpa GN=LIP1P-1 PE=3 SV=1	[more]
LISC2_POPTR	7.3e-35	84.52	Lipoyl synthase 2, chloroplastic OS=Populus trichocarpa GN=LIP1P-2 PE=3 SV=1	[more]
LISC_RICCO	9.5e-35	84.52	Lipoyl synthase, chloroplastic OS=Ricinus communis GN=LIP1P PE=3 SV=1	[more]
LISC_ARATH	2.8e-34	82.14	Lipoyl synthase, chloroplastic OS=Arabidopsis thaliana GN=LIP1P PE=2 SV=2	[more]
LISC2_ORYSI	6.8e-33	80.72	Lipoyl synthase 2, chloroplastic OS=Oryza sativa subsp. indica GN=LIP1P-2 PE=3 S...	[more]

BLAST of MELO3C025098 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPN0_CUCSA	6.6e-35	90.48	Lipoyl synthase, chloroplastic OS=Cucumis sativus GN=LIP1P PE=3 SV=1	[more]
A0A151TQ25_CAJCA	1.9e-34	90.48	Uncharacterized protein OS=Cajanus cajan GN=KK1_008343 PE=3 SV=1	[more]
A0A0R4J646_SOYBN	3.3e-34	89.29	Lipoyl synthase, chloroplastic OS=Glycine max GN=LIP1P PE=3 SV=1	[more]
A0A0B2PVA7_GLYSO	3.3e-34	89.29	Lipoyl synthase, chloroplastic OS=Glycine soja GN=LIP1P PE=3 SV=1	[more]
A0A0S3SLJ2_PHAAN	4.3e-34	89.29	Lipoyl synthase, chloroplastic OS=Vigna angularis var. angularis GN=Vigan.08G024...	[more]

BLAST of MELO3C025098 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G08415.1	1.6e-35	82.14	Radical SAM superfamily protein	[more]
AT2G20860.1	2.0e-22	60.24	lipoic acid synthase 1	[more]

BLAST of MELO3C025098 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090239\|ref\|XP_008445908.1\|	7.3e-35	91.67	PREDICTED: lipoyl synthase, chloroplastic [Cucumis melo]	[more]
gi\|449458724\|ref\|XP_004147097.1\|	9.5e-35	90.48	PREDICTED: lipoyl synthase, chloroplastic [Cucumis sativus]	[more]
gi\|1012357974\|gb\|KYP69158.1\|	2.8e-34	90.48	hypothetical protein KK1_008343 [Cajanus cajan]	[more]
gi\|356575490\|ref\|XP_003555873.1\|	4.7e-34	89.29	PREDICTED: lipoyl synthase, chloroplastic [Glycine max]	[more]
gi\|1012245645\|ref\|XP_015942135.1\|	4.7e-34	89.29	PREDICTED: lipoyl synthase 1, chloroplastic [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003698	Lipoyl_synth
IPR013785	Aldolase_TIM

Vocabulary: **Molecular Function**
Term	Definition
GO:0051539	4 iron, 4 sulfur cluster binding
GO:0016992	lipoate synthase activity
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009107	lipoate biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009107	lipoate biosynthetic process
biological_process	GO:0009249	protein lipoylation
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016992	lipoate synthase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025098T1	MELO3C025098T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003698	Lipoyl synthase	PANTHER	PTHR10949	LIPOYL SYNTHASE	coord: 10..93 score: 4.3
IPR013785	Aldolase-type TIM barrel	GENE3D	G3DSA:3.20.20.70		coord: 9..87 score: 2.2
None	No IPR available	PANTHER	PTHR10949:SF12	LIPOYL SYNTHASE, CHLOROPLASTIC	coord: 10..93 score: 4.3
None	No IPR available	unknown	SSF102114	Radical SAM enzymes	coord: 9..86 score: 9.42

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025098	Silver-seed gourd	carmeB0531
MELO3C025098	Silver-seed gourd	carmeB0533
MELO3C025098	Silver-seed gourd	carmeB0819
MELO3C025098	Cucumber (Chinese Long) v3	cucmeB351
MELO3C025098	Cucumber (Chinese Long) v3	cucmeB352
MELO3C025098	Watermelon (97103) v2	mewmbB004
MELO3C025098	Wax gourd	mewgoB009
MELO3C025098	Cucurbita maxima (Rimu)	cmameB252
MELO3C025098	Cucurbita maxima (Rimu)	cmameB260
MELO3C025098	Cucurbita maxima (Rimu)	cmameB625
MELO3C025098	Cucurbita moschata (Rifu)	cmomeB240
MELO3C025098	Cucurbita moschata (Rifu)	cmomeB247
MELO3C025098	Cucurbita moschata (Rifu)	cmomeB616
MELO3C025098	Wild cucumber (PI 183967)	cpimeB343
MELO3C025098	Wild cucumber (PI 183967)	cpimeB345
MELO3C025098	Cucumber (Chinese Long) v2	cumeB352
MELO3C025098	Cucumber (Chinese Long) v2	cumeB353
MELO3C025098	Watermelon (Charleston Gray)	mewcgB012
MELO3C025098	Watermelon (97103) v1	mewmB026
MELO3C025098	Cucurbita pepo (Zucchini)	cpemeB151
MELO3C025098	Cucurbita pepo (Zucchini)	cpemeB351
MELO3C025098	Bottle gourd (USVL1VR-Ls)	lsimeB009
MELO3C025098	Cucumber (Gy14) v2	cgybmeB294
MELO3C025098	Cucumber (Gy14) v2	cgybmeB295