MELO3C025077 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025077
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	TBC domain containing protein
Location	chr9 : 14675096 .. 14675590 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCATACAATTTTTCTACAAATTCTAAACTCATTTAAGTTCCATTTTCTCCTCAATTGTTGGTGGATGCTTACTTTACATCAGATAGGTTGGTAAAGACTTTTATCACGCACATGAACAGATTGGTTAATTTTCAACATTTTGATTGCTTTACTACTTGACTTATCTACTTTTTTGCGTCATCTACTTGAAGTAGTGATCTTGATATTTTTGATCTCTGTGATAAGTGCAACGATATTATTTTTGTAATATAATTATTTAATTTCATAATTATTTAATTTCATATATTATGACAGTTGTACCTTAAATCAATTTTTTACTTTTTCTATAAAACTCATTATTTTATAAATGTTTATTACAGGTCTTGATGTGGTTCGGACAGACAAAACATTGGTATTATATGAAAAGCAAGAAAACTTGTCAAAACTTTGGGATATTCTTGCTGTTTATGCCTGGATAGATAAAGACATCGATTACTGTCAAGGTGGGTAA

mRNA sequence

ATGGACCATACAATTTTTCTACAAATTCTAAACTCATTTAAGTTCCATTTTCTCCTCAATTGTTGGTGGATGCTTACTTTACATCAGATAGGTCTTGATGTGGTTCGGACAGACAAAACATTGGTATTATATGAAAAGCAAGAAAACTTGTCAAAACTTTGGGATATTCTTGCTGTTTATGCCTGGATAGATAAAGACATCGATTACTGTCAAGGTGGGTAA

Coding sequence (CDS)

ATGGACCATACAATTTTTCTACAAATTCTAAACTCATTTAAGTTCCATTTTCTCCTCAATTGTTGGTGGATGCTTACTTTACATCAGATAGGTCTTGATGTGGTTCGGACAGACAAAACATTGGTATTATATGAAAAGCAAGAAAACTTGTCAAAACTTTGGGATATTCTTGCTGTTTATGCCTGGATAGATAAAGACATCGATTACTGTCAAGGTGGGTAA

Protein sequence

MDHTIFLQILNSFKFHFLLNCWWMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQGG*

Homology

[Close]

BLAST of MELO3C025077 vs. TrEMBL
Match: A0A0A0L6C5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078290 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-19
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDVVRTD+TLV YEKQENLSKLWDILAVYAWIDKD+ YCQG
Sbjct: 181 WMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQG 230

[Close]

BLAST of MELO3C025077 vs. TrEMBL
Match: A0A067EGB4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013868mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-19
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDV+RTD+TLV YEKQENLSKLWDILAVYAW+D+D+ YCQG
Sbjct: 169 WMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQG 218

[Close]

BLAST of MELO3C025077 vs. TrEMBL
Match: A0A067E5B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013868mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-19
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDV+RTD+TLV YEKQENLSKLWDILAVYAW+D+D+ YCQG
Sbjct: 169 WMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQG 218

[Close]

BLAST of MELO3C025077 vs. TrEMBL
Match: V4UH55_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008337mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-19
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDV+RTD+TLV YEKQENLSKLWDILAVYAW+D+D+ YCQG
Sbjct: 169 WMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQG 218

[Close]

BLAST of MELO3C025077 vs. TrEMBL
Match: A0A067E4X2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013868mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-19
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDV+RTD+TLV YEKQENLSKLWDILAVYAW+D+D+ YCQG
Sbjct: 169 WMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQG 218

[Close]

BLAST of MELO3C025077 vs. TAIR10
Match: AT5G54780.1 (AT5G54780.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-20
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           W+LTLHQIGLDV RTD+TLV YEK+ENLSKLWDILA+YAWID D+ YCQG
Sbjct: 167 WLLTLHQIGLDVNRTDRTLVFYEKKENLSKLWDILALYAWIDNDVGYCQG 216

[Close]

BLAST of MELO3C025077 vs. TAIR10
Match: AT4G27100.1 (AT4G27100.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 92.8 bits (229), Expect = 9.4e-20
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           W+LTLHQIGLDV RTD+ LV YEK+ENLSKLWDIL+VYAWID D+ YCQG
Sbjct: 169 WLLTLHQIGLDVNRTDRALVFYEKKENLSKLWDILSVYAWIDNDVGYCQG 218

[Close]

BLAST of MELO3C025077 vs. TAIR10
Match: AT2G20440.1 (AT2G20440.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 9.1e-15
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WML+LHQIGLDV RTD+ L  YE   N SKLWD+LA+Y W++ DI Y QG
Sbjct: 163 WMLSLHQIGLDVARTDRYLCFYENDRNQSKLWDVLAIYTWLNLDIGYVQG 212

[Close]

BLAST of MELO3C025077 vs. TAIR10
Match: AT4G28550.1 (AT4G28550.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-13
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WML L QIGLDVVRTD+ L  YE + N ++LWDIL++Y W++ DI Y QG
Sbjct: 163 WMLVLSQIGLDVVRTDRYLCFYESESNQARLWDILSIYTWLNPDIGYVQG 212

[Close]

BLAST of MELO3C025077 vs. TAIR10
Match: AT2G43490.1 (AT2G43490.1 Ypt/Rab-GAP domain of gyp1p superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-11
Identity = 29/50 (58.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           W+ TLH+I +DVVRTD  L  YE   NL ++ DILAVYAW+D    YCQG
Sbjct: 355 WLWTLHRIVVDVVRTDSHLEFYEDPGNLGRMSDILAVYAWVDPATGYCQG 404

[Close]

BLAST of MELO3C025077 vs. NCBI nr
Match: gi|449470425|ref|XP_004152917.1| (PREDICTED: GTPase-activating protein gyp7-like [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDVVRTD+TLV YEKQENLSKLWDILAVYAWIDKD+ YCQG
Sbjct: 181 WMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQG 230

[Close]

BLAST of MELO3C025077 vs. NCBI nr
Match: gi|700201014|gb|KGN56147.1| (hypothetical protein Csa_3G078290 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDVVRTD+TLV YEKQENLSKLWDILAVYAWIDKD+ YCQG
Sbjct: 181 WMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQG 230

[Close]

BLAST of MELO3C025077 vs. NCBI nr
Match: gi|659126939|ref|XP_008463439.1| (PREDICTED: GTPase-activating protein gyp7 [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDVVRTD+TLV YEKQENLSKLWDILAVYAWIDKD+ YCQG
Sbjct: 182 WMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQG 231

[Close]

BLAST of MELO3C025077 vs. NCBI nr
Match: gi|641831162|gb|KDO50229.1| (hypothetical protein CISIN_1g013868mg [Citrus sinensis])

HSP 1 Score: 101.3 bits (251), Expect = 7.5e-19
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDV+RTD+TLV YEKQENLSKLWDILAVYAW+D+D+ YCQG
Sbjct: 169 WMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQG 218

[Close]

BLAST of MELO3C025077 vs. NCBI nr
Match: gi|567920402|ref|XP_006452207.1| (hypothetical protein CICLE_v10008337mg [Citrus clementina])

HSP 1 Score: 101.3 bits (251), Expect = 7.5e-19
Identity = 43/50 (86.00%), Postives = 48/50 (96.00%), Query Frame = 1


Query: 23  WMLTLHQIGLDVVRTDKTLVLYEKQENLSKLWDILAVYAWIDKDIDYCQG 73
           WMLTLHQIGLDV+RTD+TLV YEKQENLSKLWDILAVYAW+D+D+ YCQG
Sbjct: 169 WMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQG 218

The following BLAST results are available for this feature:

BLAST of MELO3C025077 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6C5_CUCSA	1.4e-19	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078290 PE=4 SV=1	[more]
A0A067EGB4_CITSI	5.2e-19	86.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013868mg PE=4 SV=1	[more]
A0A067E5B3_CITSI	5.2e-19	86.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013868mg PE=4 SV=1	[more]
V4UH55_9ROSI	5.2e-19	86.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008337mg PE=4 SV=1	[more]
A0A067E4X2_CITSI	5.2e-19	86.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013868mg PE=4 SV=1	[more]

BLAST of MELO3C025077 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54780.1	2.5e-20	82.00	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT4G27100.1	9.4e-20	80.00	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G20440.1	9.1e-15	64.00	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT4G28550.1	1.7e-13	60.00	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT2G43490.1	3.6e-11	58.00	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]

BLAST of MELO3C025077 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470425\|ref\|XP_004152917.1\|	2.0e-19	92.00	PREDICTED: GTPase-activating protein gyp7-like [Cucumis sativus]	[more]
gi\|700201014\|gb\|KGN56147.1\|	2.0e-19	92.00	hypothetical protein Csa_3G078290 [Cucumis sativus]	[more]
gi\|659126939\|ref\|XP_008463439.1\|	2.0e-19	92.00	PREDICTED: GTPase-activating protein gyp7 [Cucumis melo]	[more]
gi\|641831162\|gb\|KDO50229.1\|	7.5e-19	86.00	hypothetical protein CISIN_1g013868mg [Citrus sinensis]	[more]
gi\|567920402\|ref\|XP_006452207.1\|	7.5e-19	86.00	hypothetical protein CICLE_v10008337mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GTPase-TBC_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025077T1	MELO3C025077T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 26..72 score: 3.
IPR000195	Rab-GTPase-TBC domain	PROFILE	PS50086	TBC_RABGAP	coord: 12..73 score: 11
IPR000195	Rab-GTPase-TBC domain	unknown	SSF47923	Ypt/Rab-GAP domain of gyp1p	coord: 19..72 score: 1.23
None	No IPR available	GENE3D	G3DSA:1.10.8.270		coord: 27..72 score: 1.
None	No IPR available	PANTHER	PTHR22957	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	coord: 26..72 score: 8.2
None	No IPR available	PANTHER	PTHR22957:SF206	SUBFAMILY NOT NAMED	coord: 26..72 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025077	Cucumber (Gy14) v2	cgybmeB295
MELO3C025077	Cucumber (Gy14) v2	cgybmeB304
MELO3C025077	Silver-seed gourd	carmeB0531
MELO3C025077	Silver-seed gourd	carmeB0532
MELO3C025077	Silver-seed gourd	carmeB0821
MELO3C025077	Cucumber (Chinese Long) v3	cucmeB352
MELO3C025077	Watermelon (97103) v2	mewmbB009
MELO3C025077	Wax gourd	mewgoB017
MELO3C025077	Cucurbita maxima (Rimu)	cmameB252
MELO3C025077	Cucurbita maxima (Rimu)	cmameB253
MELO3C025077	Cucurbita maxima (Rimu)	cmameB635
MELO3C025077	Cucurbita moschata (Rifu)	cmomeB240
MELO3C025077	Cucurbita moschata (Rifu)	cmomeB241
MELO3C025077	Cucurbita moschata (Rifu)	cmomeB625
MELO3C025077	Wild cucumber (PI 183967)	cpimeB345
MELO3C025077	Wild cucumber (PI 183967)	cpimeB356
MELO3C025077	Cucumber (Chinese Long) v2	cumeB352
MELO3C025077	Watermelon (Charleston Gray)	mewcgB019
MELO3C025077	Watermelon (97103) v1	mewmB032
MELO3C025077	Cucurbita pepo (Zucchini)	cpemeB157
MELO3C025077	Cucurbita pepo (Zucchini)	cpemeB359
MELO3C025077	Bottle gourd (USVL1VR-Ls)	lsimeB013