MELO3C025046 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C025046
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Descriptionleucine-rich repeat transmembrane protein kinase family protein
Locationchr9 : 15318187 .. 15318360 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGGATGATCTTATAAATGAAGATGATGATTCTATCGACTGCGACCGTGTTGAAGATGAAGATGATGTTCCTATCGGCTGTGACTATTTTAAAGATGAAGATGATGATCGTCTCGGCTGCGTCACCTTGAAGATAAGTATGATGATCGTCTCGGCTGTGCCGCCTTGA

mRNA sequence

ATGGAGGAGGATGATCTTATAAATGAAGATGATGATTCTATCGACTGCGACCGTGTTGAAGATGAAGATGATGTTCCTATCGGCTGTGACTATTTTAAAGATGAAGATGATGATCGTCTCGGCTGCGTCACCTTGAAGATAAGTATGATGATCGTCTCGGCTGTGCCGCCTTGA

Coding sequence (CDS)

ATGGAGGAGGATGATCTTATAAATGAAGATGATGATTCTATCGACTGCGACCGTGTTGAAGATGAAGATGATGTTCCTATCGGCTGTGACTATTTTAAAGATGAAGATGATGATCGTCTCGGCTGCGTCACCTTGAAGATAAGTATGATGATCGTCTCGGCTGTGCCGCCTTGA

Protein sequence

MEEDDLINEDDDSIDCDRVEDEDDVPIGCDYFKDEDDDRLGCVTLKISMMIVSAVPP*
Homology
[Close]
BLAST of MELO3C025046 vs. NCBI nr
Match: gi|659114284|ref|XP_008456992.1| (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 2.8e-13
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 2   EEDDLI-----NEDDDSIDCDRVEDEDDVPIGCDYFKDEDDDRLGCVTLKISMMIVSAV 56
           E+DD I     +EDDDSIDCD +ED+DD PIG D F+DEDDDRLGCV LK+ MMIVS +
Sbjct: 44  EDDDFIDFYIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSVI 102

[Close]
BLAST of MELO3C025046 vs. NCBI nr
Match: gi|659114284|ref|XP_008456992.1| (PREDICTED: prostatic spermine-binding protein-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 5.2e-07
Identity = 38/72 (52.78%), Postives = 43/72 (59.72%), Query Frame = 1 

Query: 2   EEDDLI-----NEDDDSIDCDRVEDE-------------DDVPIGCDYFKDEDDDRLGCV 56
           E+DD I     NEDDD ID   +EDE             DD PIG D F+DEDDDRLGCV
Sbjct: 32  EDDDSIDFYIENEDDDFIDF-YIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDDRLGCV 91


HSP 2 Score: 52.0 bits (123), Expect = 4.1e-04
Identity = 37/104 (35.58%), Postives = 44/104 (42.31%), Query Frame = 1 

Query: 1   MEEDDLINEDDDSIDCDRVEDEDDVP---------------------------------- 56
           ME+DDLI  DDD ID +R++DEDD                                    
Sbjct: 1   MEKDDLI--DDDPIDFNRIKDEDDDSIDFYIEDEDDDSIDFYIENEDDDFIDFYIEDEDD 60


HSP 3 Score: 40.0 bits (92), Expect = 1.6e+00
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 

Query: 10  DDDSIDCDRVEDEDDVPIGCDYFKDEDDDRL 41
           DDD +  D +EDED+ P  C   +DEDDD L
Sbjct: 107 DDDPLGYDNIEDEDEDPFSCGCIEDEDDDSL 137

The following BLAST results are available for this feature:
BLAST of MELO3C025046 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114284|ref|XP_008456992.1|2.8e-1366.10PREDICTED: prostatic spermine-binding protein-like [Cucumis melo][more]
gi|659114284|ref|XP_008456992.1|5.2e-0752.78PREDICTED: prostatic spermine-binding protein-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C025046T1MELO3C025046T1mRNA