MELO3C025000 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025000
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	TOX high mobility group box family member 4-A, putative isoform 4
Location	chr3 : 17223012 .. 17223248 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTGCAGATAACATATGAAGATAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCCAAGGAGTACTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTATGTACATAA

mRNA sequence

ATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTGCAGATAACATATGAAGATAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCCAAGGAGTACTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTATGTACATAA

Coding sequence (CDS)

ATGGAAGCAAATGAAGAAAGTATTAAGAACAAAGAGAAAGTGAAGAGCTTACTTCTTCTATTGCAGATAACATATGAAGATAGAGATGAAGCAAGAGATCAACTGCAGAAGGAAACAATGTGTGCCAAGGAGTACTGGAACCAACATGAAAAATGGTGGTCGTTGTCAAGTTACTATGATATTGTAAAAGGAGAAGGAAACAATAATGTCAATCCTACTATGATATTATGTACATAA

Protein sequence

MEANEESIKNKEKVKSLLLLLQITYEDRDEARDQLQKETMCAKEYWNQHEKWWSLSSYYDIVKGEGNNNVNPTMILCT*

Homology

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BLAST of MELO3C025000 vs. TrEMBL
Match: A0A0A0KHV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303220 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.8e-09
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 1  MEANEESIKNKEKVKSLLLLLQITYEDRDEARDQLQK 38
          MEANEES+KNKEKVKSLLLLLQ  YE+RDEARDQLQK
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

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BLAST of MELO3C025000 vs. NCBI nr
Match: gi|778714527|ref|XP_011657251.1| (PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 9.8e-09
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 1  MEANEESIKNKEKVKSLLLLLQITYEDRDEARDQLQK 38
          MEANEES+KNKEKVKSLLLLLQ  YE+RDEARDQLQK
Sbjct: 33 MEANEESVKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

[Close]

BLAST of MELO3C025000 vs. NCBI nr
Match: gi|659095048|ref|XP_008448366.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 66.2 bits (160), Expect = 2.9e-08
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 1


Query: 1  MEANEESIKNKEKVKSLLLLLQITYEDRDEARDQLQK 38
          MEA+EESIKNKEKVKSLLLLLQ  YE+RDEARDQLQK
Sbjct: 33 MEASEESIKNKEKVKSLLLLLQAAYEERDEARDQLQK 69

The following BLAST results are available for this feature:

BLAST of MELO3C025000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHV7_CUCSA	6.8e-09	89.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G303220 PE=4 SV=1	[more]

BLAST of MELO3C025000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778714527\|ref\|XP_011657251.1\|	9.8e-09	89.19	PREDICTED: uncharacterized protein LOC101217302 [Cucumis sativus]	[more]
gi\|659095048\|ref\|XP_008448366.1\|	2.9e-08	89.19	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012862	DUF1635

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025000T1	MELO3C025000T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012862	Protein of unknown function DUF1635	PFAM	PF07795	DUF1635	coord: 1..58 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C025000	Watermelon (97103) v1	mewmB303
MELO3C025000	Watermelon (97103) v1	mewmB312
MELO3C025000	Cucurbita pepo (Zucchini)	cpemeB512
MELO3C025000	Cucurbita pepo (Zucchini)	cpemeB721
MELO3C025000	Bottle gourd (USVL1VR-Ls)	lsimeB471
MELO3C025000	Cucumber (Gy14) v2	cgybmeB409
MELO3C025000	Silver-seed gourd	carmeB0678
MELO3C025000	Cucumber (Chinese Long) v3	cucmeB478
MELO3C025000	Watermelon (97103) v2	mewmbB304
MELO3C025000	Wax gourd	mewgoB347
MELO3C025000	Cucumber (Gy14) v1	cgymeB592
MELO3C025000	Cucurbita maxima (Rimu)	cmameB026
MELO3C025000	Cucurbita maxima (Rimu)	cmameB414
MELO3C025000	Cucurbita moschata (Rifu)	cmomeB015
MELO3C025000	Cucurbita moschata (Rifu)	cmomeB401
MELO3C025000	Wild cucumber (PI 183967)	cpimeB468
MELO3C025000	Cucumber (Chinese Long) v2	cumeB415
MELO3C025000	Watermelon (Charleston Gray)	mewcgB297