MELO3C024979 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024979
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Phosphoribosylformylglycinamidine synthase subunit PurL
Location	chr3 : 17667502 .. 17667858 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGAAGAAAGAAGAAAGGTTCGAGGCAATAGATCAAGAAATCTCTGGCATCCGAGCAGAACTTCAGAAACTACCAGCGGTCGAGGAGAAGTTATCTTCACTGGCAATGGTAAAGAATATTGAGCAATTAAGTATTCAAAGCGAGAAACAACAGCAGCAACACCAATTATTGATGAAGTACATCGAAGGCATTGTCAAAGAGAAATTTGTGATAACACTTGATACCGAAGGTTCATCAAGTAGAACAAAGACGAGTGAGAATAAGGTGGTAGAAGGTGAAGCAATGATACTCGAACTCACTGAAGAGTCGAAAACTAGTAAGAAGAAAGAAGAGGAAAAGACGAGTGACTGA

mRNA sequence

ATGACGAAGAAGAAAGAAGAAAGGTTCGAGGCAATAGATCAAGAAATCTCTGGCATCCGAGCAGAACTTCAGAAACTACCAGCGGTCGAGGAGAAGTTATCTTCACTGGCAATGGTAAAGAATATTGAGCAATTAAGTATTCAAAGCGAGAAACAACAGCAGCAACACCAATTATTGATGAAGTACATCGAAGGCATTGTCAAAGAGAAATTTGTGATAACACTTGATACCGAAGGTTCATCAAGTAGAACAAAGACGAGTGAGAATAAGGTGGTAGAAGGTGAAGCAATGATACTCGAACTCACTGAAGAGTCGAAAACTAGTAAGAAGAAAGAAGAGGAAAAGACGAGTGACTGA

Coding sequence (CDS)

ATGACGAAGAAGAAAGAAGAAAGGTTCGAGGCAATAGATCAAGAAATCTCTGGCATCCGAGCAGAACTTCAGAAACTACCAGCGGTCGAGGAGAAGTTATCTTCACTGGCAATGGTAAAGAATATTGAGCAATTAAGTATTCAAAGCGAGAAACAACAGCAGCAACACCAATTATTGATGAAGTACATCGAAGGCATTGTCAAAGAGAAATTTGTGATAACACTTGATACCGAAGGTTCATCAAGTAGAACAAAGACGAGTGAGAATAAGGTGGTAGAAGGTGAAGCAATGATACTCGAACTCACTGAAGAGTCGAAAACTAGTAAGAAGAAAGAAGAGGAAAAGACGAGTGACTGA

Protein sequence

MTKKKEERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEKQQQQHQLLMKYIEGIVKEKFVITLDTEGSSSRTKTSENKVVEGEAMILELTEESKTSKKKEEEKTSD*

Homology

[Close]

BLAST of MELO3C024979 vs. NCBI nr
Match: gi|659118578|ref|XP_008459193.1| (PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 41/118 (34.75%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 1   MTKKKEERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEKQQQQHQLLM 60
           M +K EER + ++QE       LQ+LP ++E L  L   K+I++++ Q  KQQQ   +++
Sbjct: 1   MARKMEERMDLVEQE-------LQRLPIIDENLPLLT--KSIKEMNAQINKQQQ---VIL 60

Query: 61  KYIEGIVKEKFVITLDTEGSSSRTKTSENKVVEGEAMILELTEESKTSKKKEEEKTSD 119
           KYIEGI+++       TEGS+S TK+       G+ ++ E+ ++SKT+ + E+    D
Sbjct: 61  KYIEGIIRDNSSAGKTTEGSTSHTKS-------GDTILSEVVDDSKTNTRHEDINPMD 99

[Close]

BLAST of MELO3C024979 vs. NCBI nr
Match: gi|659109397|ref|XP_008454696.1| (PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 6  EERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEKQQQQHQLLMKYIEG 65
          EER E IDQEI+G++ EL K+PA+E  LS +A  K++E + +QSEKQQ   QLL   IE 
Sbjct: 7  EERLECIDQEIAGMKKELSKVPAIEMSLSEIA--KSLELMRLQSEKQQ---QLLFTIIET 66

Query: 66 IVKEKFVIT-LDTEGSSSRTKTSENK 91
            KE+  ++ L+TE  +   +  + K
Sbjct: 67 NSKERSTMSRLETESPAKEFEKMKGK 87

[Close]

BLAST of MELO3C024979 vs. NCBI nr
Match: gi|659134102|ref|XP_008467029.1| (PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 37/116 (31.90%), Postives = 65/116 (56.03%), Query Frame = 1


Query: 6   EERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEKQQQQHQLLMKYIEG 65
           EER E+ +QE++GI+ EL K+P +E  L  + + +N+E + +QSEKQQ   Q ++ Y+E 
Sbjct: 7   EERMESFEQEVAGIKKELAKMPVIESTL--IELTRNMEMMRLQSEKQQ---QAILSYMEM 66

Query: 66  IVKEKFVI---TLDTEGSSSRTKTSENKVVEGEAMILELTEESKTSKKKEEEKTSD 119
             KE+ +      +++  +S T  S+N        +    EE  T K + +E ++D
Sbjct: 67  NAKERSMAGERMNESDTQNSPTVKSKNDKASSSRDV----EEINTKKNEPDENSND 113

The following BLAST results are available for this feature:

BLAST of MELO3C024979 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118578\|ref\|XP_008459193.1\|	1.5e-08	34.75	PREDICTED: uncharacterized protein LOC103498388 [Cucumis melo]	[more]
gi\|659109397\|ref\|XP_008454696.1\|	1.4e-06	44.19	PREDICTED: uncharacterized protein LOC103495051 [Cucumis melo]	[more]
gi\|659134102\|ref\|XP_008467029.1\|	4.0e-06	31.90	PREDICTED: uncharacterized protein LOC103504456, partial [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024979T1	MELO3C024979T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024979	Cucumber (Chinese Long) v3	cucmeB478
MELO3C024979	Watermelon (97103) v2	mewmbB304
MELO3C024979	Wax gourd	mewgoB347
MELO3C024979	Cucumber (Gy14) v1	cgymeB592
MELO3C024979	Cucurbita maxima (Rimu)	cmameB414
MELO3C024979	Cucurbita moschata (Rifu)	cmomeB401
MELO3C024979	Wild cucumber (PI 183967)	cpimeB468
MELO3C024979	Cucumber (Chinese Long) v2	cumeB415
MELO3C024979	Cucurbita pepo (Zucchini)	cpemeB512
MELO3C024979	Bottle gourd (USVL1VR-Ls)	lsimeB471
MELO3C024979	Cucumber (Gy14) v2	cgybmeB409