MELO3C024978 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024978
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRNA-directed DNA methylation 4, putative isoform 2
Locationchr3 : 17670482 .. 17671268 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGTGCGTCTTTCTCCCTTTTTCTGGTTTCCCTTTCTGCTATGGTTTACACTTTATGTTTTTTTTTTTAATCATTTCATATATTTTTTTTTTTTCAGGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGGTAAAAACCAAAAACCTTTTCCTTCTAGTTTAAAAATCTAAATTATATCTGATTTCTTTTATGATTGTCTTTTTTGGTTTCAGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCACTCAGAAAGTAATGATGTAGAAGAGGATGAGTTATCGGAGGAGGAAAAAGTTGAATTATATGAGGATGACATAAATGATGATTTTGATGAAGATGATGGTGGTGATAGCTTTGATTATGATAGTAATGGTGGTCATGATGAAGGTGAAGATAGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTAGGGAATATATATCTTTTTTAATTAGGGTTTTTAGCGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAGGGATGTATATAATGTGGAAGATTTAGGGTCTTTTTGGCTTGATTAGGGAAAAAAGTTACGACTTTTATTTTCTTTTTTTACATGAAGGGTTTAGATTGAACCTCAAAATTTTTCAAAAGTAAATTTTGAGTTCTC

mRNA sequence

ATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCACTCAGAAAGTAATGATGTAGAAGAGGATGAGTTATCGGAGGAGGAAAAAGTTGAATTATATGAGGATGACATAAATGATGATTTTGATGAAGATGATGGTGGTGATAGCTTTGATTATGATAGTAATGGTGGTCATGATGAAGGTGAAGATAGGAGATGGTCCTATCGTTGAATTTTTCACTAGAGATAGAACAAGCTTTTCATCCTTAGGGAATATATATCTTTTTTAATTAGGGTTTTTAGCGATTTGCTTATTATGGGAGGAATGCTTGCTATGATTAGGGATGTATATAATGTGGAAGATTTAGGGTCTTTTTGGCTTGATTAGGGAAAAAAGTTACGACTTTTATTTTCTTTTTTTACATGAAGGGTTTAGATTGAACCTCAAAATTTTTCAAAAGTAAATTTTGAGTTCTC

Coding sequence (CDS)

ATGGAGATTGCTGAAGACGATGCCTCTTATCCATTTCCTTTGAAACAAGTTGATGAATTGGATCATGATAGGCCTAGTGACTCCGATTATGAAACTGATGATTCAAATGCTGAAAACAATCCGTGCTTCGATTACCCGGATGAGGAAGAGTTGGAGAGTGAATCTTCAAATGAGATGATGAGAAGCAGTCCACTCAGAAAGTAA

Protein sequence

MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMMRSSPLRK*
Homology
[Close]
BLAST of MELO3C024978 vs. Swiss-Prot
Match: RDM4_ARATH (RNA-directed DNA methylation 4 OS=Arabidopsis thaliana GN=RDM4 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-07
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 1   MEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENNPCFDYPDEEELESESSNE 59
           M+I+ED +   FPL  V++ +   D   +SDY+++DSNAE++P  DYP+EEE E E  ++
Sbjct: 231 MDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDD 290

[Close]
BLAST of MELO3C024978 vs. TrEMBL
Match: A0A0A0K5Q3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238430 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.4e-23
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES SSN+ +
Sbjct: 241 VEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDEL 300

Query: 61  RSS 64
             S
Sbjct: 301 EDS 303

[Close]
BLAST of MELO3C024978 vs. TrEMBL
Match: W9RUV5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006899 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-10
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 7   DASYPFPLKQVDELDH-DRPSDSDYETDDSNAENNPCFDYPDE----EELESESSN 58
           DAS PFPL QVDE +  D P DSDYE+DDSNAENNP  DYPDE    EELESE+S+
Sbjct: 243 DASSPFPLVQVDEEEFCDGPGDSDYESDDSNAENNPLNDYPDETSEDEELESETSD 298

[Close]
BLAST of MELO3C024978 vs. TrEMBL
Match: A0A068U6Z1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016612001 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-10
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 1   MEIAEDDASYPFPLKQVDELD-HDRPSDSDYETDDSNAENNPCFDYPDEEELESE 55
           M+I E++A+ PFPL QV++ D +D P DS+YETDDSNAENNP  DYPDE+  + E
Sbjct: 235 MDITEENAASPFPLLQVEDDDCYDGPDDSEYETDDSNAENNPLNDYPDEQSSDVE 289

[Close]
BLAST of MELO3C024978 vs. TrEMBL
Match: W9S6C6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_001532 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.1e-10
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 7   DASYPFPLKQVDELDH-DRPSDSDYETDDSNAENNPCFDYPDE----EELESESSN 58
           DAS PFPL QVDE +  D P DSDYE+DDSNAENNP  DYP+E    EELESE+S+
Sbjct: 241 DASSPFPLVQVDEEEFCDGPGDSDYESDDSNAENNPLNDYPNETSEDEELESETSD 296

[Close]
BLAST of MELO3C024978 vs. TrEMBL
Match: A0A0K9QUY8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_143660 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-09
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 

Query: 5   EDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMMRS 64
           E +ASYPFPL QVD+ D+  D P+DSDYETDDSNAE +P  DYP+EE  + E        
Sbjct: 247 ETEASYPFPLVQVDDDDYHYDGPNDSDYETDDSNAEQHPNNDYPEEESSDEEEEKSSKSG 306

[Close]
BLAST of MELO3C024978 vs. TAIR10
Match: AT2G30280.1 (AT2G30280.1 RNA-directed DNA methylation 4)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-08
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 

Query: 1   MEIAEDDASYPFPLKQVDELDH--DRPSDSDYETDDSNAENNPCFDYPDEEELESESSNE 59
           M+I+ED +   FPL  V++ +   D   +SDY+++DSNAE++P  DYP+EEE E E  ++
Sbjct: 231 MDISEDSSKNQFPLVIVEDEEEFCDGSDESDYDSEDSNAEDHPKTDYPEEEEEEEEEDDD 290

[Close]
BLAST of MELO3C024978 vs. NCBI nr
Match: gi|659126188|ref|XP_008463057.1| (PREDICTED: RNA-directed DNA methylation 4 isoform X4 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.1e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1  MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
          MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM
Sbjct: 22 MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 81

Query: 61 RSSPLRK 68
          RSSPLRK
Sbjct: 82 RSSPLRK 88

[Close]
BLAST of MELO3C024978 vs. NCBI nr
Match: gi|449444138|ref|XP_004139832.1| (PREDICTED: RNA-directed DNA methylation 4 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-22
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EIAEDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES SSN+ +
Sbjct: 241 VEIAEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESTSSNDEL 300

Query: 61  RSS 64
             S
Sbjct: 301 EDS 303

[Close]
BLAST of MELO3C024978 vs. NCBI nr
Match: gi|659092553|ref|XP_008447118.1| (PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES+SSN+ +
Sbjct: 239 VEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDEL 298

Query: 61  RSS 64
             S
Sbjct: 299 EDS 301

[Close]
BLAST of MELO3C024978 vs. NCBI nr
Match: gi|659092549|ref|XP_008447116.1| (PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 1   MEIAEDDASYPFPLKQVDELDHDRPSDSDYETDDSNAENNPCFDYPDEEELESESSNEMM 60
           +EI EDDAS+PFPL QVD+LDHD PSDSDYETDDSNAENNPCFDYPDEEELES+SSN+ +
Sbjct: 241 VEIPEDDASHPFPLIQVDDLDHDGPSDSDYETDDSNAENNPCFDYPDEEELESKSSNDEL 300

Query: 61  RSS 64
             S
Sbjct: 301 EDS 303

[Close]
BLAST of MELO3C024978 vs. NCBI nr
Match: gi|703138294|ref|XP_010106702.1| (hypothetical protein L484_006899 [Morus notabilis])

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-10
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 7   DASYPFPLKQVDELDH-DRPSDSDYETDDSNAENNPCFDYPDE----EELESESSN 58
           DAS PFPL QVDE +  D P DSDYE+DDSNAENNP  DYPDE    EELESE+S+
Sbjct: 243 DASSPFPLVQVDEEEFCDGPGDSDYESDDSNAENNPLNDYPDETSEDEELESETSD 298

The following BLAST results are available for this feature:
BLAST of MELO3C024978 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RDM4_ARATH4.6e-0743.33RNA-directed DNA methylation 4 OS=Arabidopsis thaliana GN=RDM4 PE=1 SV=1[more]
BLAST of MELO3C024978 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5Q3_CUCSA9.4e-2382.54Uncharacterized protein OS=Cucumis sativus GN=Csa_7G238430 PE=4 SV=1[more]
W9RUV5_9ROSA2.4e-1069.64Uncharacterized protein OS=Morus notabilis GN=L484_006899 PE=4 SV=1[more]
A0A068U6Z1_COFCA9.1e-1060.00Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00016612001 PE=4 SV=1[more]
W9S6C6_9ROSA9.1e-1067.86Uncharacterized protein OS=Morus notabilis GN=L484_001532 PE=4 SV=1[more]
A0A0K9QUY8_SPIOL2.6e-0955.74Uncharacterized protein OS=Spinacia oleracea GN=SOVF_143660 PE=4 SV=1[more]
BLAST of MELO3C024978 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G30280.12.6e-0843.33 RNA-directed DNA methylation 4[more]
BLAST of MELO3C024978 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126188|ref|XP_008463057.1|2.1e-31100.00PREDICTED: RNA-directed DNA methylation 4 isoform X4 [Cucumis melo][more]
gi|449444138|ref|XP_004139832.1|1.3e-2282.54PREDICTED: RNA-directed DNA methylation 4 [Cucumis sativus][more]
gi|659092553|ref|XP_008447118.1|3.0e-2280.95PREDICTED: RNA-directed DNA methylation 4-like isoform X2 [Cucumis melo][more]
gi|659092549|ref|XP_008447116.1|3.0e-2280.95PREDICTED: RNA-directed DNA methylation 4-like isoform X1 [Cucumis melo][more]
gi|703138294|ref|XP_010106702.1|3.4e-1069.64hypothetical protein L484_006899 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013883TF_Iwr1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024978T1MELO3C024978T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013883Transcription factor Iwr1PFAMPF08574DUF1762coord: 10..49
score: 4.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C024978Cla003683Watermelon (97103) v1mewmB304
MELO3C024978ClCG08G003170Watermelon (Charleston Gray)mewcgB306
MELO3C024978Bhi04G001750Wax gourdmewgoB347
MELO3C024978Lsi08G002500Bottle gourd (USVL1VR-Ls)lsimeB471
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024978Cucumber (Gy14) v1cgymeB592
MELO3C024978Cucurbita maxima (Rimu)cmameB414
MELO3C024978Cucurbita moschata (Rifu)cmomeB401
MELO3C024978Wild cucumber (PI 183967)cpimeB468
MELO3C024978Cucumber (Chinese Long) v2cumeB415
MELO3C024978Cucurbita pepo (Zucchini)cpemeB512
MELO3C024978Cucumber (Gy14) v2cgybmeB409
MELO3C024978Cucumber (Chinese Long) v3cucmeB478
MELO3C024978Watermelon (97103) v2mewmbB304