MELO3C024976 (gene) Melon (DHL92) v3.5.1

NameMELO3C024976
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionDNA-directed RNA polymerase subunit beta'
Locationchr3 : 17684891 .. 17685118 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAAAGGAAGAAGCCAAGAAAAAGAGGCGAGTAGAGCTTTTGAGTGAGGTGGAGAAGGTGGCCAAGTTTGTGGAAAAGGAAAAGGGCAAGGAAAAGGCACATGAAGAGCATTACGAGGAGTTTGAGAAAGAAGTAGAAAACCTAAGTCCCTTGGAGGAGGAAAACCCAAGACCAAAGAAAAAGAGAAAGGTCACAATGAAAAAGATGACCTTGAAGGCATAA

mRNA sequence

ATGAAAGAAAAGGAAGAAGCCAAGAAAAAGAGGCGAGTAGAGCTTTTGAGTGAGGTGGAGAAGGTGGCCAAGTTTGTGGAAAAGGAAAAGGGCAAGGAAAAGGCACATGAAGAGCATTACGAGGAGTTTGAGAAAGAAGTAGAAAACCTAAGTCCCTTGGAGGAGGAAAACCCAAGACCAAAGAAAAAGAGAAAGGTCACAATGAAAAAGATGACCTTGAAGGCATAA

Coding sequence (CDS)

ATGAAAGAAAAGGAAGAAGCCAAGAAAAAGAGGCGAGTAGAGCTTTTGAGTGAGGTGGAGAAGGTGGCCAAGTTTGTGGAAAAGGAAAAGGGCAAGGAAAAGGCACATGAAGAGCATTACGAGGAGTTTGAGAAAGAAGTAGAAAACCTAAGTCCCTTGGAGGAGGAAAACCCAAGACCAAAGAAAAAGAGAAAGGTCACAATGAAAAAGATGACCTTGAAGGCATAA

Protein sequence

MKEKEEAKKKRRVELLSEVEKVAKFVEKEKGKEKAHEEHYEEFEKEVENLSPLEEENPRPKKKRKVTMKKMTLKA*
BLAST of MELO3C024976 vs. NCBI nr
Match: gi|659090014|ref|XP_008445787.1| (PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.1e-12
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1

Query: 2   KEKEEAKKKRRVELLSEVEKVAKFVEKEKGKEKAHEEHYEEFEKEVENLSPLEEENPRPK 61
           +EK+E K + R ELL +V+ VA   EK+K +EK  E HYEEFEKE++ L PLEE+  RP 
Sbjct: 91  REKKETKLREREELLGKVDNVALSAEKDKCEEKNFEVHYEEFEKEIDKLCPLEEKVIRPA 150

Query: 62  KKRKVTMKKMTLK 75
           KKR  TMKK  L+
Sbjct: 151 KKRTFTMKKKALR 163

BLAST of MELO3C024976 vs. NCBI nr
Match: gi|659083323|ref|XP_008442290.1| (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-10
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1

Query: 4   KEEAKKKRRVELLSEVEKVAKFVEKEKGKEKAHEEHYEEFEKEVENLSPLEEE-NPRPKK 63
           K+E K ++  ELL++V+K+A  VEK K KEK  EE Y+EFEKE++  SPLE+    RP K
Sbjct: 41  KKEIKLRQPEELLNKVDKLALSVEKGKEKEKTFEEFYKEFEKEIDEFSPLEDNVVERPAK 100

Query: 64  KRKVTMKKMTLK 75
           KR VTMKK  L+
Sbjct: 101 KRNVTMKKKVLR 112

BLAST of MELO3C024976 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 4.7e-08
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 1

Query: 2   KEKEEAKKKRRVELLSEVEKVAKFVEKEKGKEKAHEEHYEEFEKEVENLSPLEEENPRPK 61
           +EK+E K + + ELL++V+KVA  VEK K +EK  EEH EEF+KE+E LSPLE+E     
Sbjct: 59  EEKKEIKLREKEELLNKVDKVALSVEKRK-EEKTFEEHCEEFKKEIEELSPLEDEVVEKS 118

Query: 62  KKRKVTMK 70
            K+K  M+
Sbjct: 119 SKKKRIME 125

BLAST of MELO3C024976 vs. NCBI nr
Match: gi|700189199|gb|KGN44432.1| (hypothetical protein Csa_7G290550 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.7e-06
Identity = 31/74 (41.89%), Postives = 52/74 (70.27%), Query Frame = 1

Query: 1  MKEKEEAKKKRRVELLSEVEKVAKFVEKEKGKEKAHEEHYEEFEKEVENLSPLEEENPRP 60
          M++K++ K + + ELL+++++     +K K ++   EE  EEFE+++E+LSPLE+E  +P
Sbjct: 9  MQDKKKVKLREQKELLNKIDQAPISTKKGKVRKTPSEEICEEFERKLEDLSPLEDEVVKP 68

Query: 61 KKKRKVTMKKMTLK 75
           KK KVT+KK  LK
Sbjct: 69 LKK-KVTVKKSVLK 81

BLAST of MELO3C024976 vs. NCBI nr
Match: gi|659123312|ref|XP_008461598.1| (PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-06
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1

Query: 2   KEKEEAKKKRRVELLSEVEKVAKFVEKEKGKEKAHEEHYEEFEKEVENLSPLEE--ENPR 61
           +EK+E+  + R ELL+EV+K+A  V K KGKEK  + + +EFEKE+E    LE+     +
Sbjct: 75  EEKKESMLREREELLNEVDKMALLVNKSKGKEKTTDGYDKEFEKELEEFISLEDGVVEKQ 134

Query: 62  PKKKR 65
           PKKKR
Sbjct: 135 PKKKR 139

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659090014|ref|XP_008445787.1|3.1e-1254.79PREDICTED: axoneme-associated protein mst101(3)-like [Cucumis melo][more]
gi|659083323|ref|XP_008442290.1|2.9e-1054.17PREDICTED: stress response protein NST1-like [Cucumis melo][more]
gi|659130998|ref|XP_008465464.1|4.7e-0851.47PREDICTED: DNA ligase 1-like [Cucumis melo][more]
gi|700189199|gb|KGN44432.1|5.7e-0641.89hypothetical protein Csa_7G290550 [Cucumis sativus][more]
gi|659123312|ref|XP_008461598.1|9.8e-0647.69PREDICTED: PERQ amino acid-rich with GYF domain-containing protein 2-like [Cucum... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024976T1MELO3C024976T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..46
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None