MELO3C024928 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024928
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative reverse transcriptase
Location	chr1 : 10556428 .. 10556748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAATGGAAGTGCAATTTCTTTTATTGGTGGTAAGGAAGTTTTTTTGAAGTCATTGAACCAAACTCTCCCTACTTATGCTATGTCTTGTCTTAAACTCAAAAATTTTGTTTGGATTGGGGTGACTAAAGCTATGACTCATTTTTGGTGGGGTTCTTCGGATGGGAATAAAGAAATCCATTGGATTAACTGGAAGACCACGTATTTACTGAAGGATTTGAGTGGTATGAGGTTCAGGAATTTTGAAGTTTTCAATCAAGCACTTCTTACTAATCAAGCATGGTGTATCTGTCAATGTCCCTATACTCTATTGGCTTGA

mRNA sequence

ATGCTCAATGGAAGTGCAATTTCTTTTATTGGTGGTAAGGAAGTTTTTTTGAAGTCATTGAACCAAACTCTCCCTACTTATGCTATGTCTTGTCTTAAACTCAAAAATTTTGTTTGGATTGGGGTGACTAAAGCTATGACTCATTTTTGGTGGGGTTCTTCGGATGGGAATAAAGAAATCCATTGGATTAACTGGAAGACCACGTATTTACTGAAGGATTTGAGTGGTATGAGGTTCAGGAATTTTGAAGTTTTCAATCAAGCACTTCTTACTAATCAAGCATGGTGTATCTGTCAATGTCCCTATACTCTATTGGCTTGA

Coding sequence (CDS)

ATGCTCAATGGAAGTGCAATTTCTTTTATTGGTGGTAAGGAAGTTTTTTTGAAGTCATTGAACCAAACTCTCCCTACTTATGCTATGTCTTGTCTTAAACTCAAAAATTTTGTTTGGATTGGGGTGACTAAAGCTATGACTCATTTTTGGTGGGGTTCTTCGGATGGGAATAAAGAAATCCATTGGATTAACTGGAAGACCACGTATTTACTGAAGGATTTGAGTGGTATGAGGTTCAGGAATTTTGAAGTTTTCAATCAAGCACTTCTTACTAATCAAGCATGGTGTATCTGTCAATGTCCCTATACTCTATTGGCTTGA

Protein sequence

MLNGSAISFIGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYLLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA*

Homology

[Close]

BLAST of MELO3C024928 vs. Swiss-Prot
Match: M310_ARATH (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1


Query: 24  LPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINW-KTTYLLKDLSGMRFRNF 83
           LP YAMSC +L   +   +T AMT FWW S +  ++I W+ W K     +D  G+ FR+ 
Sbjct: 3   LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDL 62

Query: 84  EVFNQALLTNQAWCICQCPYTLLA 107
             FNQALL  Q++ I   P+TLL+
Sbjct: 63  GWFNQALLAKQSFRIIHQPHTLLS 86

[Close]

BLAST of MELO3C024928 vs. TrEMBL
Match: W5BD93_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-19
Identity = 46/96 (47.92%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKE+ LKS+ Q +PTYAMS  K+ NF   G+  AM+ FWWG  D  K +HW+ W    +
Sbjct: 14  GGKEILLKSVVQAIPTYAMSVFKIPNFFCKGIIDAMSQFWWGDEDNQKRMHWMAWWKMCV 73

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            KD  GM FR+   FN ALL  QAW + + P +L A
Sbjct: 74  PKDQGGMGFRDIHCFNLALLAKQAWRLLENPESLCA 109

[Close]

BLAST of MELO3C024928 vs. TrEMBL
Match: W5F431_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 46/96 (47.92%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKE+ LKS+ Q +PTYAMS  K+   +  G+  AM+HFWWG  D  K +HW+ W    L
Sbjct: 14  GGKEILLKSVVQAIPTYAMSVFKIPKKICKGIIDAMSHFWWGDEDNQKRMHWMAWWKMCL 73

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            KD  GM FR+   FN ALL  QAW +   P +L A
Sbjct: 74  PKDQGGMGFRDIHCFNLALLAKQAWRLLDNPDSLCA 109

[Close]

BLAST of MELO3C024928 vs. TrEMBL
Match: W5AIY6_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.2e-18
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKE+ LKS+ Q +PTYAMS  K+   +  G+  AM+HFWWG  D  K +HW+ W    +
Sbjct: 14  GGKEILLKSVVQAIPTYAMSVFKIPKKICKGIIDAMSHFWWGDEDNQKRMHWMAWWKMCV 73

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            K+  GM FR+   FNQALL  QAW +   P +L A
Sbjct: 74  PKEQGGMGFRDIHCFNQALLAKQAWRLLDNPDSLCA 109

[Close]

BLAST of MELO3C024928 vs. TrEMBL
Match: W5C1E5_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKE+ LKS+ Q +PTYAMS  K+   +  G+  AM+HFWWG+ D  K +HW+ W    +
Sbjct: 14  GGKEILLKSVVQAIPTYAMSVFKIPKKICKGIIDAMSHFWWGNEDNQKRMHWMAWWKMCV 73

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            KD  GM FR+   FN ALL  QAW +   P +L A
Sbjct: 74  PKDQGGMGFRDIHCFNLALLAKQAWRLLDNPDSLCA 109

[Close]

BLAST of MELO3C024928 vs. TrEMBL
Match: W5E9B2_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-18
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKE+ LKS+ Q +PTYAMS  K+  F   G+  AM+ FWWG  D  K +HW+ W    +
Sbjct: 14  GGKEILLKSVVQAIPTYAMSVFKIPKFFCKGIIDAMSQFWWGDEDNQKRMHWMAWWKMCV 73

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            KDL GM F +   FN ALL  QAW + + P +L A
Sbjct: 74  PKDLGGMGFHDIHCFNLALLAKQAWRLLENPESLCA 109

[Close]

BLAST of MELO3C024928 vs. TAIR10
Match: ATMG00310.1 (ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-14
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 1


Query: 24  LPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINW-KTTYLLKDLSGMRFRNF 83
           LP YAMSC +L   +   +T AMT FWW S +  ++I W+ W K     +D  G+ FR+ 
Sbjct: 3   LPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRDL 62

Query: 84  EVFNQALLTNQAWCICQCPYTLLA 107
             FNQALL  Q++ I   P+TLL+
Sbjct: 63  GWFNQALLAKQSFRIIHQPHTLLS 86

[Close]

BLAST of MELO3C024928 vs. TAIR10
Match: AT4G29090.1 (AT4G29090.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-10
Identity = 29/83 (34.94%), Postives = 38/83 (45.78%), Query Frame = 1


Query: 24  LPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYLLKDLSGMRFRNFE 83
           LPTY M+C  L   V   +   +  FWW +    K +HW  W      K   G+ F++ E
Sbjct: 3   LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62

Query: 84  VFNQALLTNQAWCICQCPYTLLA 107
            FN ALL  Q W +   P +L+A
Sbjct: 63  AFNLALLGKQMWRMLSRPESLMA 85

[Close]

BLAST of MELO3C024928 vs. NCBI nr
Match: gi|923870082|ref|XP_013709367.1| (PREDICTED: uncharacterized protein LOC106413079 [Brassica napus])

HSP 1 Score: 104.8 bits (260), Expect = 9.8e-20
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           +GGKEV LK++    P YAMSC KL       +T AM+ FWW S +   +IHW+ W +  
Sbjct: 708 LGGKEVLLKAVALAFPVYAMSCFKLPKTTIANLTSAMSSFWWNSMEQKNKIHWVKWDSLC 767

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
           L KDL G+ F++ E FNQALL NQAW + Q P +L+A
Sbjct: 768 LPKDLGGLGFKDLESFNQALLANQAWKVIQNPNSLIA 804

[Close]

BLAST of MELO3C024928 vs. NCBI nr
Match: gi|923870084|ref|XP_013709368.1| (PREDICTED: uncharacterized protein LOC106413080 [Brassica napus])

HSP 1 Score: 104.8 bits (260), Expect = 9.8e-20
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           +GGKEV LK++    P YAMSC KL       +T AM+ FWW S +   +IHW+ W +  
Sbjct: 266 LGGKEVLLKAVALAFPVYAMSCFKLPKTTIANLTSAMSSFWWNSMEQKNKIHWVKWDSLC 325

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
           L KDL G+ F++ E FNQALL NQAW + Q P +L+A
Sbjct: 326 LPKDLGGLGFKDLESFNQALLANQAWKVIQNPNSLIA 362

[Close]

BLAST of MELO3C024928 vs. NCBI nr
Match: gi|685260518|ref|XP_009140393.1| (PREDICTED: uncharacterized protein LOC103864388 [Brassica rapa])

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 46/96 (47.92%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 11  GGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTYL 70
           GGKEV LKS+   LP YAMSC +L   +   +  AM  FWW  +D  K+IHWI+WK   +
Sbjct: 795 GGKEVLLKSIAMALPVYAMSCFRLTKHLCQKIMSAMASFWWDENDEKKKIHWISWKKLCI 854

Query: 71  LKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            K+  G+ FR+ E FNQALL  QAW +   P +L+A
Sbjct: 855 SKENGGLGFRDIEDFNQALLAKQAWRLLNDPTSLIA 890

[Close]

BLAST of MELO3C024928 vs. NCBI nr
Match: gi|922484634|ref|XP_013639569.1| (PREDICTED: uncharacterized protein LOC106344806 [Brassica oleracea var. oleracea])

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-18
Identity = 48/98 (48.98%), Postives = 58/98 (59.18%), Query Frame = 1


Query: 9   FIGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTT 68
           F GGKE+ LK+    LP YAMS  KL   +   ++ AM +FWWGS    K+IHWI W   
Sbjct: 590 FQGGKEILLKTSASALPVYAMSVFKLPKTICDNISSAMANFWWGSDAHKKKIHWIAWDKF 649

Query: 69  YLLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
            L KD+ GM FR+ E FN ALL  QAW +   P  LLA
Sbjct: 650 CLPKDIGGMGFRDLEAFNHALLAKQAWKVFSSPECLLA 687

[Close]

BLAST of MELO3C024928 vs. NCBI nr
Match: gi|923557291|ref|XP_013738597.1| (PREDICTED: uncharacterized protein LOC106441311 [Brassica napus])

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 10  IGGKEVFLKSLNQTLPTYAMSCLKLKNFVWIGVTKAMTHFWWGSSDGNKEIHWINWKTTY 69
           +GGKE+ +K++   +P YAMSC K+       +TKAM  FWW S +  ++IHW++W T  
Sbjct: 786 LGGKEILIKAVAMAMPVYAMSCFKMTKKSCQNLTKAMADFWWNSLEHKRKIHWLSWNTLC 845

Query: 70  LLKDLSGMRFRNFEVFNQALLTNQAWCICQCPYTLLA 107
           L K+L G+ F++ + FNQALL  QAW I   P +L A
Sbjct: 846 LAKELGGLGFKDLQSFNQALLAKQAWRILNHPESLFA 882

The following BLAST results are available for this feature:

BLAST of MELO3C024928 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M310_ARATH	1.5e-12	42.86	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of MELO3C024928 vs. TrEMBL


Match Name	E-value	Identity	Description
W5BD93_WHEAT	9.9e-19	47.92	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
W5F431_WHEAT	2.2e-18	47.92	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
W5AIY6_WHEAT	2.2e-18	46.88	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
W5C1E5_WHEAT	3.8e-18	46.88	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]
W5E9B2_WHEAT	3.8e-18	46.88	Uncharacterized protein OS=Triticum aestivum PE=4 SV=1	[more]

BLAST of MELO3C024928 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00310.1	8.5e-14	42.86	ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family p...	[more]
AT4G29090.1	7.5e-10	34.94	Ribonuclease H-like superfamily protein	[more]

BLAST of MELO3C024928 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|923870082\|ref\|XP_013709367.1\|	9.8e-20	48.45	PREDICTED: uncharacterized protein LOC106413079 [Brassica napus]	[more]
gi\|923870084\|ref\|XP_013709368.1\|	9.8e-20	48.45	PREDICTED: uncharacterized protein LOC106413080 [Brassica napus]	[more]
gi\|685260518\|ref\|XP_009140393.1\|	1.8e-18	47.92	PREDICTED: uncharacterized protein LOC103864388 [Brassica rapa]	[more]
gi\|922484634\|ref\|XP_013639569.1\|	1.8e-18	48.98	PREDICTED: uncharacterized protein LOC106344806 [Brassica oleracea var. oleracea...	[more]
gi\|923557291\|ref\|XP_013738597.1\|	2.4e-18	44.33	PREDICTED: uncharacterized protein LOC106441311 [Brassica napus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024928T1	MELO3C024928T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024928	Wax gourd	mewgoB240
MELO3C024928	Cucumber (Gy14) v1	cgymeB466
MELO3C024928	Cucurbita maxima (Rimu)	cmameB014
MELO3C024928	Cucurbita maxima (Rimu)	cmameB401
MELO3C024928	Cucurbita moschata (Rifu)	cmomeB003
MELO3C024928	Cucurbita moschata (Rifu)	cmomeB392
MELO3C024928	Cucumber (Chinese Long) v2	cumeB537
MELO3C024928	Watermelon (Charleston Gray)	mewcgB163
MELO3C024928	Watermelon (97103) v1	mewmB185
MELO3C024928	Cucurbita pepo (Zucchini)	cpemeB498
MELO3C024928	Cucurbita pepo (Zucchini)	cpemeB710
MELO3C024928	Bottle gourd (USVL1VR-Ls)	lsimeB193
MELO3C024928	Cucumber (Gy14) v2	cgybmeB475
MELO3C024928	Silver-seed gourd	carmeB0871
MELO3C024928	Silver-seed gourd	carmeB0889
MELO3C024928	Cucumber (Chinese Long) v3	cucmeB556
MELO3C024928	Watermelon (97103) v2	mewmbB210