MELO3C024893 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024893
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	1-aminocyclopropane-1-carboxylate synthase
Location	chr1 : 9934398 .. 9934547 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATGTTGTCTACTAAAGCTAGCCATGATTCTCGTGGACAAAATCCCTCCTACTTCTTTGGATGGCAAGAGTACGAGAAGAACCCTTATCACCCTACTCAAAACCCCACCGGCATTATCCAAATGGCTCTTGCCGAAAACAAGTAA

mRNA sequence

ATGGGAATGTTGTCTACTAAAGCTAGCCATGATTCTCGTGGACAAAATCCCTCCTACTTCTTTGGATGGCAAGAGTACGAGAAGAACCCTTATCACCCTACTCAAAACCCCACCGGCATTATCCAAATGGCTCTTGCCGAAAACAAGTAA

Coding sequence (CDS)

ATGGGAATGTTGTCTACTAAAGCTAGCCATGATTCTCGTGGACAAAATCCCTCCTACTTCTTTGGATGGCAAGAGTACGAGAAGAACCCTTATCACCCTACTCAAAACCCCACCGGCATTATCCAAATGGCTCTTGCCGAAAACAAGTAA

Protein sequence

MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK*

Homology

[Close]

BLAST of MELO3C024893 vs. Swiss-Prot
Match: 1A18_ARATH (1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-12
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          MG+LS KAS ++ GQ+ SYF+GW+EYEKNPY   +NP GIIQM LAEN+
Sbjct: 1  MGLLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. Swiss-Prot
Match: 1A12_CUCMA (1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLSTKA+ +S GQ+ SYF GW+ YE NP+H T NP GIIQM LAEN+
Sbjct: 1  MKMLSTKATCNSHGQDSSYFLGWEAYENNPFHHTSNPNGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. Swiss-Prot
Match: 1A13_SOLLC (1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.7e-12
Identity = 33/49 (67.35%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M +LS KA+ +S GQ+ SYF GWQEYEKNPY   QNP GIIQM LAEN+
Sbjct: 1  MKLLSEKATCNSHGQDSSYFLGWQEYEKNPYDEIQNPKGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. Swiss-Prot
Match: 1A1C_MALDO (1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-12
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS  A+ +S GQ+ SYF GWQEYEKNPYH   N  GIIQM LAEN+
Sbjct: 1  MRMLSRNATFNSHGQDSSYFLGWQEYEKNPYHEVHNTNGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. Swiss-Prot
Match: 1A11_ORYSI (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 4.6e-12
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 3  MLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          +LS KA  +S GQ+ SYF GWQEYEKNP+ P  NP+GIIQM LAEN+
Sbjct: 13 LLSKKAGCNSHGQDSSYFLGWQEYEKNPFDPVSNPSGIIQMGLAENQ 59

[Close]

BLAST of MELO3C024893 vs. TrEMBL
Match: A0A0S2C3P7_CUCME (ACS11 OS=Cucumis melo PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-17
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLSTKA HDS GQN SYFFGWQEYEKNPYHPTQNP+GIIQM LAEN+
Sbjct: 1  MAMLSTKAGHDSHGQNSSYFFGWQEYEKNPYHPTQNPSGIIQMGLAENR 49

[Close]

BLAST of MELO3C024893 vs. TrEMBL
Match: Q71T07_MOMCH (1-aminocyclopropane-1-carboxylate synthase OS=Momordica charantia GN=ACS2 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.4e-17
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS+KASHDS GQ+ SYFFGWQEYEKNPYHPT+NPTGIIQM LAEN+
Sbjct: 1  MAMLSSKASHDSHGQDSSYFFGWQEYEKNPYHPTRNPTGIIQMGLAENE 49

[Close]

BLAST of MELO3C024893 vs. TrEMBL
Match: K7KT63_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G049900 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS KASHDS GQ+ SYF GWQEYEKNPYHP QNPTGIIQM LAEN+
Sbjct: 1  MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. TrEMBL
Match: K7KT62_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G049900 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS KASHDS GQ+ SYF GWQEYEKNPYHP QNPTGIIQM LAEN+
Sbjct: 1  MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. TrEMBL
Match: A0A0B2SLG0_GLYSO (1-aminocyclopropane-1-carboxylate synthase OS=Glycine soja GN=glysoja_031345 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.1e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS KASHDS GQ+ SYF GWQEYEKNPYHP QNPTGIIQM LAEN+
Sbjct: 1  MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. TAIR10
Match: AT4G37770.1 (AT4G37770.1 1-amino-cyclopropane-1-carboxylate synthase 8)

HSP 1 Score: 72.4 bits (176), Expect = 8.9e-14
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          MG+LS KAS ++ GQ+ SYF+GW+EYEKNPY   +NP GIIQM LAEN+
Sbjct: 1  MGLLSKKASCNTHGQDSSYFWGWEEYEKNPYDEIKNPDGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. TAIR10
Match: AT4G08040.1 (AT4G08040.1 1-aminocyclopropane-1-carboxylate synthase 11)

HSP 1 Score: 68.9 bits (167), Expect = 9.8e-13
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 3  MLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          MLS+K   DS GQ+ SYF GWQEYEKNP+H + N +GI+QM LAEN+
Sbjct: 1  MLSSKVVGDSHGQDSSYFLGWQEYEKNPFHESFNTSGIVQMGLAENQ 47

[Close]

BLAST of MELO3C024893 vs. TAIR10
Match: AT2G22810.1 (AT2G22810.1 1-aminocyclopropane-1-carboxylate synthase 4)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-12
Identity = 32/49 (65.31%), Postives = 35/49 (71.43%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M  LS KA+ +S GQ  SYF GW+EYEKNPY  T+NP GIIQM LAEN+
Sbjct: 1  MVQLSRKATCNSHGQVSSYFLGWEEYEKNPYDVTKNPQGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. TAIR10
Match: AT5G65800.1 (AT5G65800.1 ACC synthase 5)

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-12
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M  LSTK + +  GQ+ SYF GW+EYEKNPY   +NP G+IQM LAEN+
Sbjct: 1  MKQLSTKVTSNGHGQDSSYFLGWEEYEKNPYDEIKNPNGMIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. TAIR10
Match: AT3G49700.1 (AT3G49700.1 1-aminocyclopropane-1-carboxylate synthase 9)

HSP 1 Score: 66.6 bits (161), Expect = 4.9e-12
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M  LS K + ++ GQ+ SYF GW+EYEKNPY   +NP GIIQM LAEN+
Sbjct: 1  MKQLSRKVTSNAHGQDSSYFLGWEEYEKNPYDEIKNPNGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. NCBI nr
Match: gi|950645968|gb|ALN38792.1| (ACS11 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLSTKA HDS GQN SYFFGWQEYEKNPYHPTQNP+GIIQM LAEN+
Sbjct: 1  MAMLSTKAGHDSHGQNSSYFFGWQEYEKNPYHPTQNPSGIIQMGLAENR 49

[Close]

BLAST of MELO3C024893 vs. NCBI nr
Match: gi|659089525|ref|XP_008445556.1| (PREDICTED: 1-aminocyclopropane-1-carboxylate synthase CMA101-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLSTKA HDS GQN SYFFGWQEYEKNPYHPTQNP+GIIQM LAEN+
Sbjct: 1  MAMLSTKAGHDSHGQNSSYFFGWQEYEKNPYHPTQNPSGIIQMGLAENR 49

[Close]

BLAST of MELO3C024893 vs. NCBI nr
Match: gi|33339171|gb|AAQ14267.1|AF248736_1 (1-aminocyclopropane-1-carboxylate synthase [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 1.1e-16
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS+KASHDS GQ+ SYFFGWQEYEKNPYHPT+NPTGIIQM LAEN+
Sbjct: 1  MAMLSSKASHDSHGQDSSYFFGWQEYEKNPYHPTRNPTGIIQMGLAENE 49

[Close]

BLAST of MELO3C024893 vs. NCBI nr
Match: gi|356518148|ref|XP_003527744.1| (PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like [Glycine max])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS KASHDS GQ+ SYF GWQEYEKNPYHP QNPTGIIQM LAEN+
Sbjct: 1  MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQ 49

[Close]

BLAST of MELO3C024893 vs. NCBI nr
Match: gi|947103773|gb|KRH52156.1| (hypothetical protein GLYMA_06G049900 [Glycine max])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1  MGMLSTKASHDSRGQNPSYFFGWQEYEKNPYHPTQNPTGIIQMALAENK 50
          M MLS KASHDS GQ+ SYF GWQEYEKNPYHP QNPTGIIQM LAEN+
Sbjct: 1  MNMLSRKASHDSHGQDSSYFLGWQEYEKNPYHPIQNPTGIIQMGLAENQ 49

The following BLAST results are available for this feature:

BLAST of MELO3C024893 vs. Swiss-Prot


Match Name	E-value	Identity	Description
1A18_ARATH	1.6e-12	65.31	1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=...	[more]
1A12_CUCMA	2.1e-12	65.31	1-aminocyclopropane-1-carboxylate synthase CMA101 OS=Cucurbita maxima GN=ACS2 PE...	[more]
1A13_SOLLC	2.7e-12	67.35	1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=...	[more]
1A1C_MALDO	4.6e-12	65.31	1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2	[more]
1A11_ORYSI	4.6e-12	65.96	1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=AC...	[more]

BLAST of MELO3C024893 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S2C3P7_CUCME	1.5e-17	85.71	ACS11 OS=Cucumis melo PE=3 SV=1	[more]
Q71T07_MOMCH	7.4e-17	83.67	1-aminocyclopropane-1-carboxylate synthase OS=Momordica charantia GN=ACS2 PE=3 S...	[more]
K7KT63_SOYBN	1.1e-15	81.63	Uncharacterized protein OS=Glycine max GN=GLYMA_06G049900 PE=3 SV=1	[more]
K7KT62_SOYBN	1.1e-15	81.63	Uncharacterized protein OS=Glycine max GN=GLYMA_06G049900 PE=3 SV=1	[more]
A0A0B2SLG0_GLYSO	1.1e-15	81.63	1-aminocyclopropane-1-carboxylate synthase OS=Glycine soja GN=glysoja_031345 PE=...	[more]

BLAST of MELO3C024893 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37770.1	8.9e-14	65.31	1-amino-cyclopropane-1-carboxylate synthase 8	[more]
AT4G08040.1	9.8e-13	63.83	1-aminocyclopropane-1-carboxylate synthase 11	[more]
AT2G22810.1	1.7e-12	65.31	1-aminocyclopropane-1-carboxylate synthase 4	[more]
AT5G65800.1	2.9e-12	59.18	ACC synthase 5	[more]
AT3G49700.1	4.9e-12	59.18	1-aminocyclopropane-1-carboxylate synthase 9	[more]

BLAST of MELO3C024893 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|950645968\|gb\|ALN38792.1\|	2.1e-17	85.71	ACS11 [Cucumis melo]	[more]
gi\|659089525\|ref\|XP_008445556.1\|	2.1e-17	85.71	PREDICTED: 1-aminocyclopropane-1-carboxylate synthase CMA101-like [Cucumis melo]	[more]
gi\|33339171\|gb\|AAQ14267.1\|AF248736_1	1.1e-16	83.67	1-aminocyclopropane-1-carboxylate synthase [Momordica charantia]	[more]
gi\|356518148\|ref\|XP_003527744.1\|	1.5e-15	81.63	PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like [Glycine max]	[more]
gi\|947103773\|gb\|KRH52156.1\|	1.5e-15	81.63	hypothetical protein GLYMA_06G049900 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042218	1-aminocyclopropane-1-carboxylate biosynthetic process
biological_process	GO:0006520	cellular amino acid metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016847	1-aminocyclopropane-1-carboxylate synthase activity
molecular_function	GO:0030170	pyridoxal phosphate binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024893T1	MELO3C024893T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11751	SUBGROUP I AMINOTRANSFERASE RELATED	coord: 18..48 score: 2.0
None	No IPR available	PANTHER	PTHR11751:SF431	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4-RELATED	coord: 18..48 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024893	Cucumber (Chinese Long) v3	cucmeB556
MELO3C024893	Watermelon (97103) v2	mewmbB210
MELO3C024893	Wax gourd	mewgoB240
MELO3C024893	Cucumber (Gy14) v1	cgymeB470
MELO3C024893	Cucurbita maxima (Rimu)	cmameB014
MELO3C024893	Cucurbita moschata (Rifu)	cmomeB003
MELO3C024893	Wild cucumber (PI 183967)	cpimeB183
MELO3C024893	Cucumber (Chinese Long) v2	cumeB193
MELO3C024893	Watermelon (Charleston Gray)	mewcgB163
MELO3C024893	Watermelon (97103) v1	mewmB185
MELO3C024893	Cucurbita pepo (Zucchini)	cpemeB710
MELO3C024893	Bottle gourd (USVL1VR-Ls)	lsimeB193
MELO3C024893	Cucumber (Gy14) v2	cgybmeB475
MELO3C024893	Silver-seed gourd	carmeB0889