MELO3C024858.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C024858.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr07 : 18330795 .. 18331400 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGGTAAATGTACATTATTTCTTATGTCAACCATTATTCGTTTGTAATAAAAAAAAAAAAATAAACTAACAATTTACTGCAACACTTGAACAGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG

mRNA sequence

ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG

Coding sequence (CDS)

ATGCGGGGCTCGTCGTGCAATGGGTTCGAATGGAATTATGAACTGAAGTGCATTATTGTGAAGAAGGATGTGTTCGAGAATTGGAGTCATCCTGTTGCGAACGGCCTCCTAAACAGATCGTTTCCCCATTACAACGAACTGTGCTATGTCTTTGGGAGAGATTGTGCGACAGGAGGGCGCATAGAGACATTCGTTGATGTCGAGTCGAATGTGTCTGGATGGTACGAGGGACTTGCCAGTACTGACGATGGCAACAATATTGAGATCCCTACGATGTACAGTCAGGGACTAGACATGTCGCCTAACGACATAATGGGCACACGACCCAAACGTGCAAGTGGCGATAGGAATGCTTCAAGCGAGTTAAAGAGGAAGCGAGGTGGCCAGTCGGTAGAAATTGCGAAAGTCATATGCAGTGTCATGGAATACGTCAATGACCAACTTAATCAGAATGTAGATAGGTTGATCATACAATGCCAAGATGCAAGCGCAACACGTCAAGAGGTCGTTCAATAG

Protein sequence

MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASSELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ
Homology
[Close]
BLAST of MELO3C024858.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 86/171 (50.29%), Postives = 119/171 (69.59%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 497

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+   + D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 498 AESFADIGSNDPPGYDA-GAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 557

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQE+V+
Sbjct: 558 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 607

[Close]
BLAST of MELO3C024858.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 3.2e-37
Identity = 81/155 (52.26%), Postives = 108/155 (69.68%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATG 60
           MRG SC+GF WN E +CII ++D+F++W  SHP A GLL++SFP+Y++L YVFG+D ATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  GRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNA 120
            R ETF +V SNVS  +       D ++ +IPTMYSQG+ MSP+++ G R  +AS  RN 
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

Query: 121 SSELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVD 154
           SS  KRKRG +  E  +VI SVME+ N+QL    D
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 238

[Close]
BLAST of MELO3C024858.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 77/169 (45.56%), Postives = 106/169 (62.72%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+     SHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKE-----SHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E F D+ SN    Y+   + D   +     MYS  L+MSP+D+M TR  R S  RN SS
Sbjct: 139 AEIFADIGSNDPAGYDAFVA-DAAPDTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSS 198

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEV 170
             +RK  G + +   ++C+ + Y N+QL++  +  I+Q QDA+ T QE+
Sbjct: 199 GSRRKHTGHATDSGDIVCTAIVYGNEQLHRIAEWPILQRQDATQTCQEI 241

[Close]
BLAST of MELO3C024858.2 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATG 60
           MRG SC+ F WN E KCII + D+ +NW   HPVA  LLN+SFP+Y+EL YVF +D ATG
Sbjct: 1   MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60

Query: 61  GRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNA 120
             +ETF D+ SN    YEG     DGN++EIPT+YSQG +MS  D+   RP  AS  R  
Sbjct: 61  RGVETFTDIGSNDPSRYEGF-QPPDGNDMEIPTIYSQGFNMSQEDVWAPRPSSASDSRTR 120

Query: 121 SSELKR 125
           SS  KR
Sbjct: 121 SSGSKR 125

[Close]
BLAST of MELO3C024858.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATG 60
           MRG +C+GF WN E KCI+ +K+VF++W  SHP A GLLN+SF HY+EL YVFG+D ATG
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATG 138

Query: 61  GRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTR 109
           GR E+F D+ SN    Y+  A+ D   + + P MYS  L+MSP+D+M TR
Sbjct: 139 GRAESFADIGSNDPPGYDAFAA-DAMPDTDFPPMYSLRLNMSPDDLMETR 187

[Close]
BLAST of MELO3C024858.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.1e-41
Identity = 86/171 (50.29%), Postives = 119/171 (69.59%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+VF++WSHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 497

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E+F D+ SN    Y+   + D   + + P MYS GL+MSP+D+M TR  R S  RN SS
Sbjct: 498 AESFADIGSNDPPGYDA-GAADAMPDTDFPPMYSPGLNMSPDDLMETRTARVSERRNVSS 557

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEVVQ 172
             KRKR G + +   ++ + +EY N+QL++  +  I+Q QDA+ TRQE+V+
Sbjct: 558 GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVR 607

[Close]
BLAST of MELO3C024858.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 81/155 (52.26%), Postives = 108/155 (69.68%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATG 60
           MRG SC+GF WN E +CII ++D+F++W  SHP A GLL++SFP+Y++L YVFG+D ATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  GRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNA 120
            R ETF +V SNVS  +       D ++ +IPTMYSQG+ MSP+++ G R  +AS  RN 
Sbjct: 144 ARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNC 203

Query: 121 SSELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVD 154
           SS  KRKRG +  E  +VI SVME+ N+QL    D
Sbjct: 204 SSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIAD 238

[Close]
BLAST of MELO3C024858.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-32
Identity = 77/169 (45.56%), Postives = 106/169 (62.72%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENWSHPVANGLLNRSFPHYNELCYVFGRDCATGGR 60
           MRG +C+GF WN E KCI+ +K+     SHP A GLLN+SF HY+EL YVFG+D ATGGR
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKE-----SHPAAKGLLNKSFVHYDELSYVFGKDRATGGR 138

Query: 61  IETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNASS 120
            E F D+ SN    Y+   + D   +     MYS  L+MSP+D+M TR  R S  RN SS
Sbjct: 139 AEIFADIGSNDPAGYDAFVA-DAAPDTNFSPMYSPRLNMSPDDLMETRTARVSERRNVSS 198

Query: 121 ELKRKRGGQSVEIAKVICSVMEYVNDQLNQNVDRLIIQCQDASATRQEV 170
             +RK  G + +   ++C+ + Y N+QL++  +  I+Q QDA+ T QE+
Sbjct: 199 GSRRKHTGHATDSGDIVCTAIVYGNEQLHRIAEWPILQRQDATQTCQEI 241

[Close]
BLAST of MELO3C024858.2 vs. TrEMBL
Match: tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.4e-28
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATG 60
           MRG SC+ F WN E KCII + D+ +NW   HPVA  LLN+SFP+Y+EL YVF +D ATG
Sbjct: 1   MRGPSCSRFGWNDEAKCIIGENDLSDNWVRIHPVAKALLNKSFPYYDELAYVFKKDRATG 60

Query: 61  GRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTRPKRASGDRNA 120
             +ETF D+ SN    YEG     DGN++EIPT+YSQG +MS  D+   RP  AS  R  
Sbjct: 61  RGVETFTDIGSNDPSRYEGF-QPPDGNDMEIPTIYSQGFNMSQEDVWAPRPSSASDSRTR 120

Query: 121 SSELKR 125
           SS  KR
Sbjct: 121 SSGSKR 125

[Close]
BLAST of MELO3C024858.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.0e-26
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 0 

Query: 1   MRGSSCNGFEWNYELKCIIVKKDVFENW--SHPVANGLLNRSFPHYNELCYVFGRDCATG 60
           MRG +C+GF WN E KCI+ +K+VF++W  SHP A GLLN+SF HY+EL YVFG+D ATG
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATG 138

Query: 61  GRIETFVDVESNVSGWYEGLASTDDGNNIEIPTMYSQGLDMSPNDIMGTR 109
           GR E+F D+ SN    Y+  A+ D   + + P MYS  L+MSP+D+M TR
Sbjct: 139 GRAESFADIGSNDPPGYDAFAA-DAMPDTDFPPMYSLRLNMSPDDLMETR 187

The following BLAST results are available for this feature:
BLAST of MELO3C024858.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34114.11.1e-4050.29retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.13.2e-3752.26PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
XP_008459131.11.8e-3245.56PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
XP_008444620.13.6e-2853.97PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
XP_008466949.17.5e-2654.55PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
BLAST of MELO3C024858.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C024858.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C024858.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GCB5|E5GCB5_CUCME7.1e-4150.29Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME2.1e-3752.26uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME1.2e-3245.56uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME2.4e-2853.97uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME5.0e-2654.55uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024858.2.1MELO3C024858.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 145..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..126

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024858.2Wax gourdmedwgoB581
MELO3C024858.2Cucumber (Gy14) v2cgybmedB274
MELO3C024858.2Cucumber (Gy14) v1cgymedB452
MELO3C024858.2Cucurbita maxima (Rimu)cmamedB359
MELO3C024858.2Wild cucumber (PI 183967)cpimedB310
MELO3C024858.2Cucumber (Chinese Long) v2cumedB305
MELO3C024858.2Bottle gourd (USVL1VR-Ls)lsimedB476
MELO3C024858.2Watermelon (97103) v1medwmB499
MELO3C024858.2Cucumber (Chinese Long) v3cucmedB316
MELO3C024858.2Watermelon (97103) v2medwmbB458
MELO3C024858.2Watermelon (97103) v2medwmbB490