MELO3C024855 (gene) Melon (DHL92) v3.5.1

NameMELO3C024855
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCytochrome b559 subunit alpha
Locationchr7 : 16836992 .. 16837243 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGGAAGCACAGGAGAACATTCTTTTGTTGATATTATCACCAGTATTCGATATTGGGTCATTCATAGCATTACTATACCTTCTCCATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGGTCTTTTTAG

mRNA sequence

ATGTCTGGAAGCACAGGAGAACATTCTTTTGTTGATATTATCACCAGTATTCGATATTGGGTCATTCATAGCATTACTATACCTTCTCCATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGGTCTTTTTAG

Coding sequence (CDS)

ATGTCTGGAAGCACAGGAGAACATTCTTTTGTTGATATTATCACCAGTATTCGATATTGGGTCATTCATAGCATTACTATACCTTCTCCATTCATTGCAGGTTGGTTATTCGTCAGCACGGGTTTAGCTTACGATGTTTTTGGAAGCCCTCGTCCAAATGAGTATTATACAGAGAGTCGACAAGGAATTCCATTAATAACTGGCCGTTTTGATTCTTTGGAACAACTCGATGAATTTAGTAGGTCTTTTTAG

Protein sequence

MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESRQGIPLITGRFDSLEQLDEFSRSF*
BLAST of MELO3C024855 vs. Swiss-Prot
Match: PSBE_OENEH (Cytochrome b559 subunit alpha OS=Oenothera elata subsp. hookeri GN=psbE PE=3 SV=4)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-39
Identity = 79/83 (95.18%), Postives = 78/83 (93.98%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. Swiss-Prot
Match: PSBE_GOSBA (Cytochrome b559 subunit alpha OS=Gossypium barbadense GN=psbE PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-39
Identity = 79/83 (95.18%), Postives = 78/83 (93.98%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. Swiss-Prot
Match: PSBE_GOSHI (Cytochrome b559 subunit alpha OS=Gossypium hirsutum GN=psbE PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-39
Identity = 79/83 (95.18%), Postives = 78/83 (93.98%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. Swiss-Prot
Match: PSBE_AMBTC (Cytochrome b559 subunit alpha OS=Amborella trichopoda GN=psbE PE=3 SV=3)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-39
Identity = 79/83 (95.18%), Postives = 78/83 (93.98%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. Swiss-Prot
Match: PSBE_SPIOL (Cytochrome b559 subunit alpha OS=Spinacia oleracea GN=psbE PE=1 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.1e-39
Identity = 79/83 (95.18%), Postives = 78/83 (93.98%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. TrEMBL
Match: H2FA99_ALLFI (Cytochrome b559 subunit alpha OS=Allium fistulosum GN=psbE PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. TrEMBL
Match: H2FAA0_ALLCE (Cytochrome b559 subunit alpha OS=Allium cepa GN=psbE PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. TrEMBL
Match: A9L9B3_LEMMI (Cytochrome b559 subunit alpha OS=Lemna minor GN=psbE PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 9.7e-38
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TE+R
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. TrEMBL
Match: A0A0S2IDT5_9ROSI (Cytochrome b559 subunit alpha OS=Cucurbita argyrosperma var. palmeri GN=psbE PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-37
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. TrEMBL
Match: A0A0G2QY13_9CARY (Cytochrome b559 subunit alpha OS=Salicornia brachiata GN=psbE PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-37
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. TAIR10
Match: ATCG00580.1 (ATCG00580.1 photosystem II reaction center protein E)

HSP 1 Score: 161.4 bits (407), Expect = 2.4e-40
Identity = 78/83 (93.98%), Postives = 77/83 (92.77%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFD LEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDPLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. NCBI nr
Match: gi|695101519|ref|YP_009057168.1| (photosystem II cytochrome b559 alpha subunit (chloroplast) [Allium cepa])

HSP 1 Score: 164.9 bits (416), Expect = 6.3e-38
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. NCBI nr
Match: gi|161784209|ref|YP_001595525.1| (PSII reaction center subunit V [Lemna minor])

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SFVDIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TE+R
Sbjct: 1  MSGSTGERSFVDIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTENR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

BLAST of MELO3C024855 vs. NCBI nr
Match: gi|641277058|emb|CDP54793.1| (Cytochrome b559 alpha chain (PsbE) [Staphylococcus aureus subsp. aureus])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1   MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
           MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 84  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 143

Query: 61  QGIPLITGRFDSLEQLDEFSRSF 84
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 144 QGIPLITGRFDSLEQLDEFSRSF 166

BLAST of MELO3C024855 vs. NCBI nr
Match: gi|7514666|pir||T14570 (cytochrome b559 component psbE - beet chloroplast)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1   MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
           MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 36  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 95

Query: 61  QGIPLITGRFDSLEQLDEFSRSF 84
           QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 96  QGIPLITGRFDSLEQLDEFSRSF 118

BLAST of MELO3C024855 vs. NCBI nr
Match: gi|757609032|ref|WP_042854921.1| (cytochrome b559 subunit alpha [Staphylococcus aureus])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-37
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 1

Query: 1  MSGSTGEHSFVDIITSIRYWVIHSITIPSPFIAGWLFVSTGLAYDVFGSPRPNEYYTESR 60
          MSGSTGE SF DIITSIRYWVIHSITIPS FIAGWLFVSTGLAYDVFGSPRPNEY+TESR
Sbjct: 1  MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESR 60

Query: 61 QGIPLITGRFDSLEQLDEFSRSF 84
          QGIPLITGRFDSLEQLDEFSRSF
Sbjct: 61 QGIPLITGRFDSLEQLDEFSRSF 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PSBE_OENEH1.1e-3995.18Cytochrome b559 subunit alpha OS=Oenothera elata subsp. hookeri GN=psbE PE=3 SV=... [more]
PSBE_GOSBA1.1e-3995.18Cytochrome b559 subunit alpha OS=Gossypium barbadense GN=psbE PE=3 SV=1[more]
PSBE_GOSHI1.1e-3995.18Cytochrome b559 subunit alpha OS=Gossypium hirsutum GN=psbE PE=3 SV=1[more]
PSBE_AMBTC1.1e-3995.18Cytochrome b559 subunit alpha OS=Amborella trichopoda GN=psbE PE=3 SV=3[more]
PSBE_SPIOL1.1e-3995.18Cytochrome b559 subunit alpha OS=Spinacia oleracea GN=psbE PE=1 SV=2[more]
Match NameE-valueIdentityDescription
H2FA99_ALLFI4.4e-3896.39Cytochrome b559 subunit alpha OS=Allium fistulosum GN=psbE PE=3 SV=1[more]
H2FAA0_ALLCE4.4e-3896.39Cytochrome b559 subunit alpha OS=Allium cepa GN=psbE PE=3 SV=1[more]
A9L9B3_LEMMI9.7e-3895.18Cytochrome b559 subunit alpha OS=Lemna minor GN=psbE PE=3 SV=1[more]
A0A0S2IDT5_9ROSI1.3e-3795.18Cytochrome b559 subunit alpha OS=Cucurbita argyrosperma var. palmeri GN=psbE PE=... [more]
A0A0G2QY13_9CARY1.3e-3795.18Cytochrome b559 subunit alpha OS=Salicornia brachiata GN=psbE PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00580.12.4e-4093.98ATCG00580.1 photosystem II reaction center protein E[more]
Match NameE-valueIdentityDescription
gi|695101519|ref|YP_009057168.1|6.3e-3896.39photosystem II cytochrome b559 alpha subunit (chloroplast) [Allium cepa][more]
gi|161784209|ref|YP_001595525.1|1.4e-3795.18PSII reaction center subunit V [Lemna minor][more]
gi|641277058|emb|CDP54793.1|1.8e-3795.18Cytochrome b559 alpha chain (PsbE) [Staphylococcus aureus subsp. aureus][more]
gi|7514666|pir||T145701.8e-3795.18cytochrome b559 component psbE - beet chloroplast[more]
gi|757609032|ref|WP_042854921.1|1.8e-3795.18cytochrome b559 subunit alpha [Staphylococcus aureus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006216PSII_cyt_b559_CS
IPR006217PSII_cyt_b559_asu
IPR013081PSII_cyt_b559_N
IPR013082PSII_cytb559_asu_lum
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
GO:0015979photosynthesis
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009539photosystem II reaction center
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0046872metal ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0015979 photosynthesis
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009539 photosystem II reaction center
cellular_component GO:0009523 photosystem II
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024855T1MELO3C024855T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006216Photosystem II cytochrome b559, conserved sitePROSITEPS00537CYTOCHROME_B559coord: 14..28
scor
IPR006217Photosystem II cytochrome b559, alpha subunitHAMAPMF_00642PSII_PsbEcoord: 1..81
score: 31
IPR006217Photosystem II cytochrome b559, alpha subunitPIRPIRSF000036Cytochrome_PsbEcoord: 1..83
score: 4.1
IPR006217Photosystem II cytochrome b559, alpha subunitTIGRFAMsTIGR01332TIGR01332coord: 2..80
score: 1.6
IPR013081Photosystem II cytochrome b559, N-terminalPFAMPF00283Cytochrom_B559coord: 6..34
score: 6.9
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionPFAMPF00284Cytochrom_B559acoord: 42..79
score: 3.6
NoneNo IPR availableGENE3DG3DSA:1.20.5.860coord: 2..83
score: 8.9
NoneNo IPR availablePANTHERPTHR33391FAMILY NOT NAMEDcoord: 1..82
score: 8.1
NoneNo IPR availablePANTHERPTHR33391:SF1CYTOCHROME B559 SUBUNIT ALPHAcoord: 1..82
score: 8.1
NoneNo IPR availableunknownSSF161045Cytochrome b559 subunitscoord: 3..83
score: 1.57

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None