MELO3C024825 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024825
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	U3 small nucleolar RNA-associated protein 10
Location	chr7 : 17621406 .. 17621660 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCTCTGCCGCTTGGTCCTTCAACTTCTCTCAAATCCAAACACCAACCTTCACAATATGAAGATCTTCCACATCAATCCACTGATGCTGACATTTTCGTCACCGACAACAAAATAGTTCCATCTCTTCCTGCTAGTTACTACGTAGCGGTTGTTGGCGGTGGTGAAGAAGGTCAAAGTGGGATTTCCAATGTTTCCTCATACTCGCTCATTTCGATTTTTAATCTCGCTCGCTCTTTGATCACCCTATAA

mRNA sequence

ATGATGTCTCTGCCGCTTGGTCCTTCAACTTCTCTCAAATCCAAACACCAACCTTCACAATATGAAGATCTTCCACATCAATCCACTGATGCTGACATTTTCGTCACCGACAACAAAATAGTTCCATCTCTTCCTGCTAGTTACTACGTAGCGGTTGTTGGCGGTGGTGAAGAAGGTCAAAGTGGGATTTCCAATGTTTCCTCATACTCGCTCATTTCGATTTTTAATCTCGCTCGCTCTTTGATCACCCTATAA

Coding sequence (CDS)

ATGATGTCTCTGCCGCTTGGTCCTTCAACTTCTCTCAAATCCAAACACCAACCTTCACAATATGAAGATCTTCCACATCAATCCACTGATGCTGACATTTTCGTCACCGACAACAAAATAGTTCCATCTCTTCCTGCTAGTTACTACGTAGCGGTTGTTGGCGGTGGTGAAGAAGGTCAAAGTGGGATTTCCAATGTTTCCTCATACTCGCTCATTTCGATTTTTAATCTCGCTCGCTCTTTGATCACCCTATAA

Protein sequence

MMSLPLGPSTSLKSKHQPSQYEDLPHQSTDADIFVTDNKIVPSLPASYYVAVVGGGEEGQSGISNVSSYSLISIFNLARSLITL*

Homology

[Close]

BLAST of MELO3C024825 vs. TrEMBL
Match: A0A0A0KMF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G286090 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.8e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 8  PSTSLKSKHQPSQYEDLPHQSTDADIFVTDNKIVPSLPASYYVAVVGGGEEGQSGISN 66
          PS SL+SKHQPSQ +D PHQS D DI   DNK +PS PASYYVA  GGG EG+SGISN
Sbjct: 23 PSASLQSKHQPSQSQDPPHQSPDPDISSADNKSLPSHPASYYVAAAGGGGEGRSGISN 80

[Close]

BLAST of MELO3C024825 vs. NCBI nr
Match: gi|659109584|ref|XP_008454782.1| (PREDICTED: SEC12-like protein 2 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 7.5e-15
Identity = 44/58 (75.86%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 8  PSTSLKSKHQPSQYEDLPHQSTDADIFVTDNKIVPSLPASYYVAVVGGGEEGQSGISN 66
          PSTSLKS+HQPSQ ED PHQS DADI   DNK VPS  ASYYVA  GGG EG+SGISN
Sbjct: 23 PSTSLKSEHQPSQSEDPPHQSADADISAADNKSVPSHLASYYVAAAGGGGEGRSGISN 80

[Close]

BLAST of MELO3C024825 vs. NCBI nr
Match: gi|449445340|ref|XP_004140431.1| (PREDICTED: SEC12-like protein 2 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 8  PSTSLKSKHQPSQYEDLPHQSTDADIFVTDNKIVPSLPASYYVAVVGGGEEGQSGISN 66
          PS SL+SKHQPSQ +D PHQS D DI   DNK +PS PASYYVA  GGG EG+SGISN
Sbjct: 23 PSASLQSKHQPSQSQDPPHQSPDPDISSADNKSLPSHPASYYVAAAGGGGEGRSGISN 80

[Close]

BLAST of MELO3C024825 vs. NCBI nr
Match: gi|700195668|gb|KGN50845.1| (hypothetical protein Csa_5G286090 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-14
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 8  PSTSLKSKHQPSQYEDLPHQSTDADIFVTDNKIVPSLPASYYVAVVGGGEEGQSGISN 66
          PS SL+SKHQPSQ +D PHQS D DI   DNK +PS PASYYVA  GGG EG+SGISN
Sbjct: 23 PSASLQSKHQPSQSQDPPHQSPDPDISSADNKSLPSHPASYYVAAAGGGGEGRSGISN 80

The following BLAST results are available for this feature:

BLAST of MELO3C024825 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMF5_CUCSA	5.8e-14	70.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G286090 PE=4 SV=1	[more]

BLAST of MELO3C024825 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109584\|ref\|XP_008454782.1\|	7.5e-15	75.86	PREDICTED: SEC12-like protein 2 [Cucumis melo]	[more]
gi\|449445340\|ref\|XP_004140431.1\|	8.3e-14	70.69	PREDICTED: SEC12-like protein 2 [Cucumis sativus]	[more]
gi\|700195668\|gb\|KGN50845.1\|	8.3e-14	70.69	hypothetical protein Csa_5G286090 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024825T1	MELO3C024825T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024825	Cucurbita moschata (Rifu)	cmomeB296
MELO3C024825	Cucurbita moschata (Rifu)	cmomeB689
MELO3C024825	Wild cucumber (PI 183967)	cpimeB314
MELO3C024825	Cucumber (Chinese Long) v2	cumeB315
MELO3C024825	Watermelon (Charleston Gray)	mewcgB454
MELO3C024825	Watermelon (97103) v1	mewmB498
MELO3C024825	Cucurbita pepo (Zucchini)	cpemeB198
MELO3C024825	Cucurbita pepo (Zucchini)	cpemeB419
MELO3C024825	Bottle gourd (USVL1VR-Ls)	lsimeB270
MELO3C024825	Cucumber (Gy14) v2	cgybmeB273
MELO3C024825	Silver-seed gourd	carmeB0382
MELO3C024825	Silver-seed gourd	carmeB0860
MELO3C024825	Cucumber (Chinese Long) v3	cucmeB319
MELO3C024825	Watermelon (97103) v2	mewmbB464
MELO3C024825	Wax gourd	mewgoB589
MELO3C024825	Cucumber (Gy14) v1	cgymeB653
MELO3C024825	Cucurbita maxima (Rimu)	cmameB306
MELO3C024825	Cucurbita maxima (Rimu)	cmameB697