MELO3C024806 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C024806
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVoltage-dependent calcium channel type A subunit alpha-1
Locationchr7 : 18042389 .. 18042787 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAATCTACGCGATGTACCTCCACTAGTTCATAAGGGACGTGTTCAAGTGGAAGAAGCTGAACTCGATGAAGTTTATCATAATGTGGAAGAAGTGCTTCTTACGACACAAACACAGAGCCAAACTGGCTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTATAGGATATTATGATGCAGGGATCGGTCCATCATCTTCATACATGGTTGTCGGTCCATCAACTTCTTACATGCATGGACAAGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCAACAAGAATCCCAACAAGAACCAGAGAACCAAGAAGACCGAGAACAACATAGAGTTTAG

mRNA sequence

ATGTACAATCTACGCGATGTACCTCCACTAGTTCATAAGGGACGTGTTCAAGTGGAAGAAGCTGAACTCGATGAAGTTTATCATAATGTGGAAGAAGTGCTTCTTACGACACAAACACAGAGCCAAACTGGCTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTATAGGATATTATGATGCAGGGATCGGTCCATCATCTTCATACATGGTTGTCGGTCCATCAACTTCTTACATGCATGGACAAGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCAACAAGAATCCCAACAAGAACCAGAGAACCAAGAAGACCGAGAACAACATAGAGTTTAG

Coding sequence (CDS)

ATGTACAATCTACGCGATGTACCTCCACTAGTTCATAAGGGACGTGTTCAAGTGGAAGAAGCTGAACTCGATGAAGTTTATCATAATGTGGAAGAAGTGCTTCTTACGACACAAACACAGAGCCAAACTGGCTATGGTAGTCCGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGGTATAGGATATTATGATGCAGGGATCGGTCCATCATCTTCATACATGGTTGTCGGTCCATCAACTTCTTACATGCATGGACAAGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCAACAAGAATCCCAACAAGAACCAGAGAACCAAGAAGACCGAGAACAACATAGAGTTTAG

Protein sequence

MYNLRDVPPLVHKGRVQVEEAELDEVYHNVEEVLLTTQTQSQTGYGSPMTMMPTFGAGYCDSEVGIGYYDAGIGPSSSYMVVGPSTSYMHGQGRGYGEHNEYLYHEAPADVSDQQESQQEPENQEDREQHRV*
Homology
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BLAST of MELO3C024806 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 69/145 (47.59%), Postives = 90/145 (62.07%), Query Frame = 1 

Query: 1   MYNLRDVPPLVHKGRVQVEEAE-LDEVYHNVEEV--LLTTQTQSQTGYGSPMTMMPTFGA 60
           MY++  VP  V + R  V+E++ L+EV  + EEV  +  TQTQS+  Y SP+ MMPTFG 
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGM 142

Query: 61  GYCDSEVGI------GYYDAGIGPSSS-----YMVVG--PSTSYMHGQGRGYGEHNEYLY 120
            Y DS VG       GYY++  G SS+     Y  +G  PS+SYMHG GRG GEHNEYLY
Sbjct: 143 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 202

Query: 121 HEAPADVSDQQESQQEPENQEDREQ 130
           ++ PA V +Q + QQ+ EN    EQ
Sbjct: 203 YKVPAAVPEQSDEQQQQENAAVPEQ 227

The following BLAST results are available for this feature:
BLAST of MELO3C024806 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659069376|ref|XP_008449513.1|2.2e-2147.59PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024806T1MELO3C024806T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C024806Cucurbita pepo (Zucchini)cpemeB198
MELO3C024806Cucurbita pepo (Zucchini)cpemeB419
MELO3C024806Bottle gourd (USVL1VR-Ls)lsimeB270
MELO3C024806Cucumber (Gy14) v2cgybmeB273
MELO3C024806Silver-seed gourdcarmeB0382
MELO3C024806Silver-seed gourdcarmeB0860
MELO3C024806Cucumber (Chinese Long) v3cucmeB319
MELO3C024806Watermelon (97103) v2mewmbB464
MELO3C024806Cucumber (Gy14) v1cgymeB653
MELO3C024806Cucurbita maxima (Rimu)cmameB306
MELO3C024806Cucurbita maxima (Rimu)cmameB697
MELO3C024806Cucurbita moschata (Rifu)cmomeB296
MELO3C024806Cucurbita moschata (Rifu)cmomeB689
MELO3C024806Wild cucumber (PI 183967)cpimeB314
MELO3C024806Cucumber (Chinese Long) v2cumeB315
MELO3C024806Watermelon (Charleston Gray)mewcgB454
MELO3C024806Watermelon (97103) v1mewmB498