MELO3C024793 (gene) Melon (DHL92) v3.5.1

NameMELO3C024793
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNuclear pore complex protein Nup160
Locationchr11 : 8395143 .. 8395438 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGAGTCTTCCACAGAGTCATCAACTCCACCTAGGCCTTCGGCCAATCTTATCCGTCCTTTTGGCGGAGCCGTTCAAATGAGGCCTCCTGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAAACTGTCACCCCCGATAAACGGTTTGTGCCAAGACCCGAAATCAAATCTTATTTTCAAAAGTCTATCGTTGTTTATGATCTTATCATAGAACCTGA

mRNA sequence

ATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGAGTCTTCCACAGAGTCATCAACTCCACCTAGGCCTTCGGCCAATCTTATCCGTCCTTTTGGCGGAGCCGTTCAAATGAGGCCTCCTGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAAACTGTCACCCCCGATAAACGAACCTGA

Coding sequence (CDS)

ATGGATTTAGGGTTTACCACAGTAACCCGATCCAGATCAAGATCGTCCAGCATACGGATTGAGTCTTCCACAGAGTCATCAACTCCACCTAGGCCTTCGGCCAATCTTATCCGTCCTTTTGGCGGAGCCGTTCAAATGAGGCCTCCTGCCTCTCCTTCATCCAATAGGGAGTCTTCTACTCCTCCTACAACTTATTCTCAAACTGTCACCCCCGATAAACGAACCTGA

Protein sequence

MDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESSTPPTTYSQTVTPDKRT*
BLAST of MELO3C024793 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-26
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 1

Query: 1   MDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESST 60
           MDLGFT VTRSRSR SSI I S TESSTPPRPS NLIRP GG +QMRPPASPSSNRESST
Sbjct: 40  MDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESST 99

Query: 61  PPTTYSQTVTPDKR 75
           PPTTYSQ VT DKR
Sbjct: 100 PPTTYSQAVTLDKR 113

BLAST of MELO3C024793 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.3e-16
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 1

Query: 1   MDLGFTTVTRSRSRSSSIRIE-SSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESS 60
           M+LGFTTVT SR+RSS I+I  +STESSTPPRPS NLIRP G  +Q RP AS  SNR+SS
Sbjct: 42  MNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS 101

Query: 61  TPPTTYS 67
            PPTTYS
Sbjct: 102 PPPTTYS 108

BLAST of MELO3C024793 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-25
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 1

Query: 1   MDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESST 60
           MDLGFT VTRSRSR SSI I S TESSTPPRPS NLIRP GG +QMRPPASPSSNRESST
Sbjct: 40  MDLGFTIVTRSRSRLSSIWIGSPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESST 99

Query: 61  PPTTYSQTVTPDKR 75
           PPTTYSQ VT DKR
Sbjct: 100 PPTTYSQAVTLDKR 113

BLAST of MELO3C024793 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-25
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 1

Query: 1   MDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESST 60
           MDL FTT+TRSRSRSS IRI S TESSTPPRPSANLIR   G VQMRP ASPSSNRESST
Sbjct: 40  MDLEFTTITRSRSRSSGIRIGSPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESST 99

Query: 61  PPTTYSQTVTPDKR 75
           PPTTYS TVTPDKR
Sbjct: 100 PPTTYSHTVTPDKR 113

BLAST of MELO3C024793 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 1

Query: 1   MDLGFTTVTRSRSRSSSIRIE-SSTESSTPPRPSANLIRPFGGAVQMRPPASPSSNRESS 60
           M+LGFTTVT SR+RSS I+I  +STESSTPPRPS NLIRP G  +Q RP AS  SNR+SS
Sbjct: 42  MNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSS 101

Query: 61  TPPTTYS 67
            PPTTYS
Sbjct: 102 PPPTTYS 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GCE6_CUCME7.7e-2685.14Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0K595_CUCSA7.3e-1671.64Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307136323|gb|ADN34145.1|1.1e-2585.14hypothetical protein [Cucumis melo subsp. melo][more]
gi|659098578|ref|XP_008450208.1|3.2e-2585.14PREDICTED: putative protein TPRXL [Cucumis melo][more]
gi|700189415|gb|KGN44648.1|1.0e-1571.64hypothetical protein Csa_7G361530 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C024793T1MELO3C024793T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None