MELO3C024779 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024779
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ABC transporter B family member 19
Location	chr11 : 8184070 .. 8184330 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCATGAAGAGAAAAGCCAAGAATATCATCTTGGCTCCTCCTCCATTGATGGCCCTTTCCCATTTCACAAGCTGCTTGTTTATGCTGATGCTTTTGATTGGGTTTTAATGGGTTTAGGGACTTTTGGTTCTGCCATTCATGGCATGGCTCAGCCCATTGGGTATCTTTTGCTTGGGAAAGCACTTGATGCATTTGGAAATAATATTGGTGATATTGATGCAATGGTTGATGCACTCTATGAGGTATATATTTATTAA

mRNA sequence

ATGATTCATGAAGAGAAAAGCCAAGAATATCATCTTGGCTCCTCCTCCATTGATGGCCCTTTCCCATTTCACAAGCTGCTTGTTTATGCTGATGCTTTTGATTGGGTTTTAATGGGTTTAGGGACTTTTGGTTCTGCCATTCATGGCATGGCTCAGCCCATTGGGTATCTTTTGCTTGGGAAAGCACTTGATGCATTTGGAAATAATATTGGTGATATTGATGCAATGGTTGATGCACTCTATGAGGTATATATTTATTAA

Coding sequence (CDS)

ATGATTCATGAAGAGAAAAGCCAAGAATATCATCTTGGCTCCTCCTCCATTGATGGCCCTTTCCCATTTCACAAGCTGCTTGTTTATGCTGATGCTTTTGATTGGGTTTTAATGGGTTTAGGGACTTTTGGTTCTGCCATTCATGGCATGGCTCAGCCCATTGGGTATCTTTTGCTTGGGAAAGCACTTGATGCATTTGGAAATAATATTGGTGATATTGATGCAATGGTTGATGCACTCTATGAGGTATATATTTATTAA

Protein sequence

MIHEEKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALDAFGNNIGDIDAMVDALYEVYIY*

Homology

[Close]

BLAST of MELO3C024779 vs. Swiss-Prot
Match: AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-08
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 22 PFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALDAFGNNIGDIDAMVD--- 81
          PF KL  +AD FD++LM +G+ G+ +HG + P+ +LL G+ ++ FG N  D+  MV    
Sbjct: 25 PFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHEVS 84

Query: 82 --ALYEVYI 86
            +LY VY+
Sbjct: 85 RYSLYFVYL 93

[Close]

BLAST of MELO3C024779 vs. Swiss-Prot
Match: AB4B_ARATH (ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 1


Query: 5  EKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALD 64
          EK  E H  + ++    PF+KL  +AD+FD++LM LGT GS  +G+  P+  LL G  +D
Sbjct: 34 EKKDEEHEKTKTV----PFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLID 93

Query: 65 AFGNN 70
          AFG N
Sbjct: 94 AFGEN 94

[Close]

BLAST of MELO3C024779 vs. Swiss-Prot
Match: AB21B_ARATH (ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 7.7e-07
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 22  PFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALDAFGNNIGDID 75
           PFHKL  +AD+FD +LM LGT G+  +G+  PI  +L G  +D FG N    D
Sbjct: 64  PFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSD 116

[Close]

BLAST of MELO3C024779 vs. TrEMBL
Match: A0A0A0LTG8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428930 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 1


Query: 1  MIHEEKSQE-YHLGSSSIDGP-FPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLL 60
          MIHEEKSQE +HLGSSS DGP FPFHKLLVYADA DWVLMGLGTFGS IHGMAQPIGYLL
Sbjct: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIGDIDAMVDALYE 83
          LGKALDAFGNNI DIDAMVDALYE
Sbjct: 61 LGKALDAFGNNIDDIDAMVDALYE 84

[Close]

BLAST of MELO3C024779 vs. TrEMBL
Match: A0A0A0LQN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428910 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-25
Identity = 60/83 (72.29%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MIHEEKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLG 60
          M +EEK+QE + GS++ D   PFHKLL Y D+ DWVLMGLGTFGS +HGMAQPIGYLLLG
Sbjct: 1  MSYEEKNQEEN-GSTTRDDALPFHKLLSYGDSLDWVLMGLGTFGSLLHGMAQPIGYLLLG 60

Query: 61 KALDAFGNNIGDIDAMVDALYEV 84
          KAL+AFGNNI D+DAMV ALY+V
Sbjct: 61 KALNAFGNNITDLDAMVHALYQV 82

[Close]

BLAST of MELO3C024779 vs. TrEMBL
Match: F6H7B1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00570 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.3e-20
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 22 PFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALDAFGNNIGDIDAMVDALY 81
          PFHKLL YAD  DWVLM LGT GS +HG+AQP+GYLLLGKALDA+G NI D +AMVDALY
Sbjct: 23 PFHKLLSYADGLDWVLMALGTLGSIVHGLAQPVGYLLLGKALDAYGTNIKDPEAMVDALY 82

Query: 82 EVYIY 87
          +V  Y
Sbjct: 83 KVVPY 87

[Close]

BLAST of MELO3C024779 vs. TrEMBL
Match: A0A067JUA8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00541 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 9.5e-20
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = 1


Query: 3   HEEKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKA 62
           H+EK +  ++ +    G  PFHKLL YAD+ DWVLM LGT GS +HG+AQP+GYLLLGKA
Sbjct: 29  HDEKEKLKNVSN----GVLPFHKLLSYADSVDWVLMVLGTLGSIVHGLAQPVGYLLLGKA 88

Query: 63  LDAFGNNIGDIDAMVDALYEVYIY 87
           LDAFGNNI D  AMV AL +V  Y
Sbjct: 89  LDAFGNNINDTHAMVQALDKVIPY 108

[Close]

BLAST of MELO3C024779 vs. TrEMBL
Match: A0A0E0LRA0_ORYPU (Uncharacterized protein OS=Oryza punctata PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-19
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 12  LGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALDAFGNNIG 71
           L SS+ + PFPF  LL YADA DW+LM LGTFGS IHGMA P+GYLLLGKALDA+G NI 
Sbjct: 30  LESSADEKPFPFFGLLCYADAVDWLLMALGTFGSIIHGMAFPVGYLLLGKALDAYGTNIN 89

Query: 72  DIDAMVDALYEV 84
           D + MV ALY+V
Sbjct: 90  DQEGMVHALYKV 101

[Close]

BLAST of MELO3C024779 vs. TAIR10
Match: AT3G28860.1 (AT3G28860.1 ATP binding cassette subfamily B19)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 28/69 (40.58%), Postives = 42/69 (60.87%), Query Frame = 1


Query: 22 PFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALDAFGNNIGDIDAMVD--- 81
          PF KL  +AD FD++LM +G+ G+ +HG + P+ +LL G+ ++ FG N  D+  MV    
Sbjct: 25 PFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHEVS 84

Query: 82 --ALYEVYI 86
            +LY VY+
Sbjct: 85 RYSLYFVYL 93

[Close]

BLAST of MELO3C024779 vs. TAIR10
Match: AT2G47000.1 (AT2G47000.1 ATP binding cassette subfamily B4)

HSP 1 Score: 56.6 bits (135), Expect = 8.8e-09
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 1


Query: 5  EKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALD 64
          EK  E H  + ++    PF+KL  +AD+FD++LM LGT GS  +G+  P+  LL G  +D
Sbjct: 34 EKKDEEHEKTKTV----PFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLID 93

Query: 65 AFGNN 70
          AFG N
Sbjct: 94 AFGEN 94

[Close]

BLAST of MELO3C024779 vs. TAIR10
Match: AT3G62150.1 (AT3G62150.1 P-glycoprotein 21)

HSP 1 Score: 54.3 bits (129), Expect = 4.4e-08
Identity = 25/53 (47.17%), Postives = 31/53 (58.49%), Query Frame = 1


Query: 22  PFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALDAFGNNIGDID 75
           PFHKL  +AD+FD +LM LGT G+  +G+  PI  +L G  +D FG N    D
Sbjct: 64  PFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSD 116

[Close]

BLAST of MELO3C024779 vs. TAIR10
Match: AT1G02520.1 (AT1G02520.1 P-glycoprotein 11)

HSP 1 Score: 47.4 bits (111), Expect = 5.3e-06
Identity = 30/80 (37.50%), Postives = 43/80 (53.75%), Query Frame = 1


Query: 4   EEKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKAL 63
           EEKS+E            PF+KL  +AD+ D +LM  G+ G+  +GM+ P   LL G  +
Sbjct: 31  EEKSEEKA-------NTVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLI 90

Query: 64  DAFGNNIGDIDAMVDALYEV 84
           D+FG N  + D +VD + +V
Sbjct: 91  DSFGKNQNNKD-IVDVVSKV 102

[Close]

BLAST of MELO3C024779 vs. NCBI nr
Match: gi|700208202|gb|KGN63321.1| (hypothetical protein Csa_2G428930 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-34
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 1


Query: 1  MIHEEKSQE-YHLGSSSIDGP-FPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLL 60
          MIHEEKSQE +HLGSSS DGP FPFHKLLVYADA DWVLMGLGTFGS IHGMAQPIGYLL
Sbjct: 1  MIHEEKSQEDHHLGSSSTDGPAFPFHKLLVYADALDWVLMGLGTFGSVIHGMAQPIGYLL 60

Query: 61 LGKALDAFGNNIGDIDAMVDALYE 83
          LGKALDAFGNNI DIDAMVDALYE
Sbjct: 61 LGKALDAFGNNIDDIDAMVDALYE 84

[Close]

BLAST of MELO3C024779 vs. NCBI nr
Match: gi|700208200|gb|KGN63319.1| (hypothetical protein Csa_2G428910 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-25
Identity = 60/83 (72.29%), Postives = 70/83 (84.34%), Query Frame = 1


Query: 1  MIHEEKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLG 60
          M +EEK+QE + GS++ D   PFHKLL Y D+ DWVLMGLGTFGS +HGMAQPIGYLLLG
Sbjct: 1  MSYEEKNQEEN-GSTTRDDALPFHKLLSYGDSLDWVLMGLGTFGSLLHGMAQPIGYLLLG 60

Query: 61 KALDAFGNNIGDIDAMVDALYEV 84
          KAL+AFGNNI D+DAMV ALY+V
Sbjct: 61 KALNAFGNNITDLDAMVHALYQV 82

[Close]

BLAST of MELO3C024779 vs. NCBI nr
Match: gi|659125774|ref|XP_008462855.1| (PREDICTED: ABC transporter B family member 19-like [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-24
Identity = 61/86 (70.93%), Postives = 67/86 (77.91%), Query Frame = 1


Query: 1  MIHEEKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLG 60
          M +EEK Q    GS S D   PFHKLL Y D+ DWVLMGLGTFGS +HGMAQPIGYLLLG
Sbjct: 13 MSYEEKKQLEENGSRSNDA-LPFHKLLSYGDSLDWVLMGLGTFGSLLHGMAQPIGYLLLG 72

Query: 61 KALDAFGNNIGDIDAMVDALYEVYIY 87
          KAL+AFGNNI D+DAMV ALY+V  Y
Sbjct: 73 KALNAFGNNINDLDAMVHALYQVVPY 97

[Close]

BLAST of MELO3C024779 vs. NCBI nr
Match: gi|778674455|ref|XP_011650216.1| (PREDICTED: ABC transporter B family member 19-like [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 58/79 (73.42%), Postives = 67/79 (84.81%), Query Frame = 1


Query: 5  EKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKALD 64
          EK+QE + GS++ D   PFHKLL Y D+ DWVLMGLGTFGS +HGMAQPIGYLLLGKAL+
Sbjct: 6  EKNQEEN-GSTTRDDALPFHKLLSYGDSLDWVLMGLGTFGSLLHGMAQPIGYLLLGKALN 65

Query: 65 AFGNNIGDIDAMVDALYEV 84
          AFGNNI D+DAMV ALY+V
Sbjct: 66 AFGNNITDLDAMVHALYQV 83

[Close]

BLAST of MELO3C024779 vs. NCBI nr
Match: gi|695064409|ref|XP_009420750.1| (PREDICTED: ABC transporter B family member 19-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-20
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 4  EEKSQEYHLGSSSIDGPFPFHKLLVYADAFDWVLMGLGTFGSAIHGMAQPIGYLLLGKAL 63
          E + +E    SS    P PFH+LL YADA DW LMGLG+ G+ +HGMAQPIGYLLLGKAL
Sbjct: 7  EGRDEEETHSSSLSSRPLPFHRLLSYADAVDWALMGLGSVGAVVHGMAQPIGYLLLGKAL 66

Query: 64 DAFGNNIGDIDAMVDALYEVY 85
          +AFG+N+GD  AMV+AL +V+
Sbjct: 67 EAFGSNVGDQTAMVEALKKVH 87

The following BLAST results are available for this feature:

BLAST of MELO3C024779 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AB19B_ARATH	3.1e-08	40.58	ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1	[more]
AB4B_ARATH	1.6e-07	44.62	ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1	[more]
AB21B_ARATH	7.7e-07	47.17	ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2	[more]

BLAST of MELO3C024779 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTG8_CUCSA	3.0e-34	91.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428930 PE=4 SV=1	[more]
A0A0A0LQN3_CUCSA	2.6e-25	72.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428910 PE=4 SV=1	[more]
F6H7B1_VITVI	7.3e-20	73.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00570 PE=4 SV=...	[more]
A0A067JUA8_JATCU	9.5e-20	61.90	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00541 PE=4 SV=1	[more]
A0A0E0LRA0_ORYPU	2.1e-19	69.44	Uncharacterized protein OS=Oryza punctata PE=4 SV=1	[more]

BLAST of MELO3C024779 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G28860.1	1.8e-09	40.58	ATP binding cassette subfamily B19	[more]
AT2G47000.1	8.8e-09	44.62	ATP binding cassette subfamily B4	[more]
AT3G62150.1	4.4e-08	47.17	P-glycoprotein 21	[more]
AT1G02520.1	5.3e-06	37.50	P-glycoprotein 11	[more]

BLAST of MELO3C024779 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208202\|gb\|KGN63321.1\|	4.4e-34	91.67	hypothetical protein Csa_2G428930 [Cucumis sativus]	[more]
gi\|700208200\|gb\|KGN63319.1\|	3.7e-25	72.29	hypothetical protein Csa_2G428910 [Cucumis sativus]	[more]
gi\|659125774\|ref\|XP_008462855.1\|	1.4e-24	70.93	PREDICTED: ABC transporter B family member 19-like [Cucumis melo]	[more]
gi\|778674455\|ref\|XP_011650216.1\|	5.3e-24	73.42	PREDICTED: ABC transporter B family member 19-like [Cucumis sativus]	[more]
gi\|695064409\|ref\|XP_009420750.1\|	4.7e-20	61.73	PREDICTED: ABC transporter B family member 19-like [Musa acuminata subsp. malacc...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010541	acropetal auxin transport
biological_process	GO:0042886	amide transport
biological_process	GO:0010315	auxin efflux
biological_process	GO:0010540	basipetal auxin transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0010329	auxin efflux transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024779T1	MELO3C024779T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C024779	Csa2G428930	Cucumber (Chinese Long) v2	cumeB087
MELO3C024779	Cla97C02G034650	Watermelon (97103) v2	mewmbB092
MELO3C024779	CsGy2G026520	Cucumber (Gy14) v2	cgybmeB083
MELO3C024779	CsaV3_2G035670	Cucumber (Chinese Long) v3	cucmeB103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024779	Watermelon (Charleston Gray)	mewcgB090
MELO3C024779	Watermelon (97103) v1	mewmB125
MELO3C024779	Cucurbita pepo (Zucchini)	cpemeB260
MELO3C024779	Cucurbita pepo (Zucchini)	cpemeB672
MELO3C024779	Bottle gourd (USVL1VR-Ls)	lsimeB053
MELO3C024779	Silver-seed gourd	carmeB0935
MELO3C024779	Wax gourd	mewgoB126
MELO3C024779	Cucumber (Gy14) v1	cgymeB072
MELO3C024779	Cucurbita maxima (Rimu)	cmameB493
MELO3C024779	Cucurbita maxima (Rimu)	cmameB534
MELO3C024779	Cucurbita moschata (Rifu)	cmomeB483
MELO3C024779	Cucurbita moschata (Rifu)	cmomeB524
MELO3C024779	Wild cucumber (PI 183967)	cpimeB096